TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148218.5 - phase: 0 
         (164 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV411960                                                               26  3.0
TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family...    25  5.1
TC18922 similar to GB|AAP42756.1|30984586|BT008743 At5g11270 {Ar...    25  6.7
TC11004 similar to UP|AAS07262 (AAS07262) Eukaryotic peptide cha...    25  8.7

>AV411960 
          Length = 320

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 17/57 (29%), Positives = 26/57 (44%)
 Frame = +2

Query: 108 SFKMVKSKVVVELLVEFNKIIGDFENIKLHLEDAGALMVWCCLEDEEGDVSHLGSDA 164
           +F    S++   LL  +N  I     IKL +E  G+  ++C   D  G  SH G  +
Sbjct: 5   TFSSSSSQITTTLLFYYNLQISA-HRIKLGIEHHGSTSIFCTAYDCIGSRSHDGGSS 172


>TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family 17
           glucosidase SCW10 precursor  (Soluble cell wall protein
           10) , partial (7%)
          Length = 871

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = -1

Query: 48  RAEKTEMVDKARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLY 107
           R++ +   D   ++I+ CL  KDL   T +T     W   E +    S    +V    L 
Sbjct: 862 RSDNSSNDDTIPASIIPCLSPKDLCAITIKTYEVFSWHSGESVQFNTSTRMGKVSGTALI 683

Query: 108 SFKMVKSKVVVELL 121
           +F  + S+V  +LL
Sbjct: 682 AF--LPSRVDTKLL 647


>TC18922 similar to GB|AAP42756.1|30984586|BT008743 At5g11270 {Arabidopsis
           thaliana;}, partial (20%)
          Length = 529

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 84  WSKFEYLYMTKSLAHRQVLKQQLYSFKMVKS 114
           W K  +LY +K L    ++K  L   K+++S
Sbjct: 340 WLKHNFLYSSKXLPXAYIIKNILEDSKLLRS 248


>TC11004 similar to UP|AAS07262 (AAS07262) Eukaryotic peptide chain release
           factor subunit 1-3 (ERF1-3), partial (19%)
          Length = 470

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 80  ATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVK--SKVVVELL 121
           ATS+ S     Y T     R V+K +   F+MVK  +K++++LL
Sbjct: 176 ATSLTSDRSMSYQTLKKCTRIVIKLRSDCFQMVKKCTKILIKLL 307


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,605,064
Number of Sequences: 28460
Number of extensions: 25511
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of query: 164
length of database: 4,897,600
effective HSP length: 83
effective length of query: 81
effective length of database: 2,535,420
effective search space: 205369020
effective search space used: 205369020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)