TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147875.9 + phase: 0 
         (122 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780096                                                               24  6.3
BP065897                                                               24  6.3
AV764875                                                               24  6.3

>AV780096 
          Length = 564

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 2/45 (4%)
 Frame = +1

Query: 4   LSSMIEESSYKAKAKMKDIETLEKKGKGQ--HGVMVVRRNENYEY 46
           L+ +++++   A     D  + +KKGKG+  H   V    E+ EY
Sbjct: 367 LNYLLQQTELFAHLAKADQSSSQKKGKGRGRHASKVTEEEEDEEY 501


>BP065897 
          Length = 499

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 98  SKTKGPLQKGQPEEQMHRRFINFH 121
           ++ + P +K QP+ Q+   F+ FH
Sbjct: 399 TQQRNPKEKEQPQPQISNPFLQFH 328


>AV764875 
          Length = 383

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 98  SKTKGPLQKGQPEE 111
           SK KGP  KGQPE+
Sbjct: 263 SKKKGPQIKGQPED 304


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,013,969
Number of Sequences: 28460
Number of extensions: 5427
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 122
length of database: 4,897,600
effective HSP length: 79
effective length of query: 43
effective length of database: 2,649,260
effective search space: 113918180
effective search space used: 113918180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)