TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147429.6 - phase: 0 /pseudo
         (974 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP053577                                                               47  1e-05
BP032481                                                               40  0.002
BP080049                                                               38  0.007
TC13259                                                                37  0.020
CB828953                                                               33  0.17
TC8358 similar to UP|Q84T14 (Q84T14) Vacuolar ATPase subunit E (...    33  0.17
AV775681                                                               29  3.1
BP079212                                                               28  7.0
BP075943                                                               28  7.0
BP034563                                                               28  9.1

>BP053577 
          Length = 463

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 41/82 (49%)
 Frame = +3

Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
           L  D GFR++  E D   L    +   +  RSYL   +S+   L   FD    SF+ R G
Sbjct: 135 LATDLGFRRITLETDCLQLFNTWR-SQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTG 311

Query: 953 NHTAHSLAQLAHSEPNLVWIEE 974
           N  A  LA+ + +  N+VW+EE
Sbjct: 312 NTVADFLARNSDTYANMVWVEE 377


>BP032481 
          Length = 447

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -1

Query: 920 DVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAHSLAQLAHSEPNLVWIEE 974
           +V+ SYL   L +   L   FD+   SF+ R GN  A   A+ A +  NLVW EE
Sbjct: 234 EVE*SYLSSILQDCRLLFTAFDVVSLSFVRRTGNTVAGFFARNAETYANLVWPEE 70


>BP080049 
          Length = 356

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 26/82 (31%), Positives = 37/82 (44%)
 Frame = -1

Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
           L  + GFR + FE D   L +  K       S L   + +   L   FD+   SF+ R  
Sbjct: 332 LASELGFR*IVFETDCLHLYEAWKRRGGC--SVLDTLILDCRNLLSYFDVFQLSFVRRTS 159

Query: 953 NHTAHSLAQLAHSEPNLVWIEE 974
           N    +LA+L     N+VW+EE
Sbjct: 158 NCVVDALAKLCFQLGNVVWVEE 93


>TC13259 
          Length = 506

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 24/79 (30%), Positives = 41/79 (51%)
 Frame = +1

Query: 896 DYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHT 955
           + GF +V+ E DN+ ++   K G     SYL   ++++ ++   F     +++PR  +  
Sbjct: 151 ELGFFEVEVEIDNQVVVNSWK-GTKKHVSYLANVIADVVRISQCFRFFSLAYVPRLSHLA 327

Query: 956 AHSLAQLAHSEPNLVWIEE 974
           A  LAQ A S+   V IEE
Sbjct: 328 ADYLAQFALSDYCFVGIEE 384


>CB828953 
          Length = 554

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 930 LSEIHQLQLNFDICHFSFIPRDGNHTAHSLAQL 962
           +++I  L+ +F  C FS+IPR+ N  AH +A+L
Sbjct: 337 VADILNLRRHFQWCGFSWIPRNSNKVAHEIAKL 239


>TC8358 similar to UP|Q84T14 (Q84T14) Vacuolar ATPase subunit E (Fragment),
            complete
          Length = 1321

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 19/68 (27%), Positives = 34/68 (49%)
 Frame = +3

Query: 907  DNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAHSLAQLAHSE 966
            +N  L   + V +++   +    + +   L   F   H S+I ++GN  A  + +LA+S 
Sbjct: 1035 NNNILNISVYVALEIIVVWTACLIKDCKALASLFISFHLSYICQNGNKAADFM*RLAYSH 1214

Query: 967  PNLVWIEE 974
             N VWIE+
Sbjct: 1215 NNSVWIED 1238


>AV775681 
          Length = 466

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 925 YLGLFLSEIHQLQLNFDICHFSFIP 949
           Y+GLF+   H+L  N  I +FS IP
Sbjct: 84  YMGLFILSGHELNTNISIIYFSTIP 158


>BP079212 
          Length = 397

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 253 FYCSNSFFLWVSPTISLKLLCIVSKLLLFMLSLMVNL 289
           FYC    ++ ++  I L  LC+ S  LL MLS M+NL
Sbjct: 120 FYCIPRAWILLTSDIELAFLCLHSS-LLSMLSPMINL 227


>BP075943 
          Length = 547

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 917 VGIDVDRSYLGLFLSEI-HQLQLNFDICHFSFIPRDGNHTAHS 958
           +G+++ RS  G+ L++  + LQL  D  HF F PR  +H  +S
Sbjct: 401 LGLEIARSTSGIVLNQRKYALQLISDSGHFGFQPRFYSHGTNS 273


>BP034563 
          Length = 501

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (50%)
 Frame = +2

Query: 253 FYCSNSFFLWVSPTISLKLLCIVSKLLLFMLSLMVNLLR 291
           F+C +SF LW+S + S    C    + +  L L  + +R
Sbjct: 272 FFCCSSFILWISSSFSSNFSC---NIRIISLDLSTSFVR 379


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.363    0.165    0.602 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,224,559
Number of Sequences: 28460
Number of extensions: 250918
Number of successful extensions: 2629
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 2049
length of query: 974
length of database: 4,897,600
effective HSP length: 99
effective length of query: 875
effective length of database: 2,080,060
effective search space: 1820052500
effective search space used: 1820052500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 60 (27.7 bits)