TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147179.2 + phase: 0 
         (185 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP064496                                                               31  0.15
BP036253                                                               28  0.95
TC16828                                                                27  1.6
TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement...    27  2.1
AV777580                                                               26  3.6
BP042006                                                               26  3.6
TC14211                                                                26  4.7
TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding ...    26  4.7
TC19539                                                                25  6.2
TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associa...    25  6.2
TC19418 weakly similar to UP|Q9FZ10 (Q9FZ10) Serine threonine ki...    25  6.2
TC16167 similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-reductas...    25  8.1
TC15093                                                                25  8.1
TC9966                                                                 25  8.1
TC8379 similar to UP|Q9SNJ3 (Q9SNJ3) ESTs AU031435(E61570), part...    25  8.1
TC8444 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit binding...    25  8.1

>BP064496 
          Length = 526

 Score = 30.8 bits (68), Expect = 0.15
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 19  IHKLFLFCNYVLLGAASSCIFLTLSLRLVPSVCGFFLILLHIFTI 63
           I+ +F+FC+YVLL     C+ L L   ++     F ++ L++F +
Sbjct: 154 IYPVFMFCSYVLLLGPQCCLILALCSSVL-----FHVLFLYLFPV 35


>BP036253 
          Length = 501

 Score = 28.1 bits (61), Expect = 0.95
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 133 LIFCLEWVVLTLAFFLKYYACV 154
           L FCL  +V  LA+ L YY+CV
Sbjct: 238 LFFCLACIVKILAWELHYYSCV 173


>TC16828 
          Length = 557

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 49  SVCGFFLILLHIFTIAGAVSGCAAVGANRWYSAH 82
           S+  F+ +L+H+F      S C + GA R   +H
Sbjct: 449 SLLSFYFVLIHLFPTHHMSSNCQSCGAERQSYSH 348


>TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
           polyprotein, partial (3%)
          Length = 591

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = +3

Query: 37  CIFLTLSLRLVPSVCGFFLILL 58
           CI  TL L + P+ C FFL+LL
Sbjct: 342 CITETLGLWMRPASCNFFLLLL 407


>AV777580 
          Length = 494

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 35  SSCIFLTLSLRLVPSVCGFFLILLH 59
           S C F  L L L+ ++CG F+ILL+
Sbjct: 171 SKCKFPFLKLILLITICGTFVILLY 245


>BP042006 
          Length = 469

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
 Frame = +1

Query: 22  LFLFCN-YVLLGAASSCIFLTLSLRLVPSVC 51
           LF+FCN ++L   A   +FL   L ++ ++C
Sbjct: 271 LFIFCNCFLLAQTAQQAVFLYFFLLILTAIC 363


>TC14211 
          Length = 488

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 42  LSLRLVPSVCGFFLILLH 59
           LS   +PS+ GFFL+++H
Sbjct: 93  LSCSFLPSISGFFLLVIH 146


>TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding protein,
          partial (24%)
          Length = 932

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +2

Query: 19 IHKLFLFCNYVLLGAASSCIFLTLSLRLVPS 49
          I KLF+F + VL+ A  + IFL    +L+ S
Sbjct: 44 ISKLFVFSSMVLISAC*AAIFLETKAQLLQS 136


>TC19539 
          Length = 565

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (49%)
 Frame = +2

Query: 16  HYNIHKLFLFCNYVLLGAASSCIFLTLSLRLVPSVCGFFLIL 57
           HY +  + L C ++ +  A+  IF T+    V   C  FLIL
Sbjct: 404 HYFVVLM*LLCLFICIFLAAFIIFRTIMQCTVVFFCMLFLIL 529


>TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associated
           protein, partial (8%)
          Length = 521

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (75%)
 Frame = +2

Query: 51  CGFFLILLHIFTIAGAVSGCA 71
           CG+FL+L++I  I   ++GC+
Sbjct: 287 CGYFLVLIYISVI*KWLAGCS 349


>TC19418 weakly similar to UP|Q9FZ10 (Q9FZ10) Serine threonine kinase
           homolog COK-4, partial (11%)
          Length = 523

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -1

Query: 25  FCNYVLL-GAASSCIFLTLSLRLVPSVCGFFLILLHIFTIAGAVSGCAAVGANRWYSAH- 82
           FC Y  +     SC+   +SL  + S C F+ I LH++      + C+++     YSA  
Sbjct: 505 FCLYHQVPNLKKSCMIFKISLFSLSSPCFFYCI*LHVWM---HNNNCSSLFRQNEYSAED 335

Query: 83  ---MVATVLTAI 91
              M+ ++L AI
Sbjct: 334 FNFMLYSLLLAI 299


>TC16167 similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-reductase-like
           (Cinnamoyl-CoA reductase-like protein), partial (44%)
          Length = 535

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 53  FFLILLHIFTIAGAVSGCAAV 73
           F + LLH  T+  AV+GCA V
Sbjct: 263 FQIDLLHYDTVLAAVNGCAGV 325


>TC15093 
          Length = 611

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 14/44 (31%), Positives = 22/44 (49%)
 Frame = +2

Query: 128 GGLAILIFCLEWVVLTLAFFLKYYACVEGGNTCRTVVLGSAKVQ 171
           G + ILI+    ++L + FF    AC+   N C  +V+ S   Q
Sbjct: 395 GYVIILIYGFICLILQIYFFRNLAACIIFCNACIHIVMYSTLCQ 526


>TC9966 
          Length = 862

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 60  IFTIAGAVSGCAAVGANRWYSAHMVAT 86
           + TI      C   G NRW+ AH+  T
Sbjct: 305 LLTIKMP*PSCLHFGENRWFCAHLCVT 385


>TC8379 similar to UP|Q9SNJ3 (Q9SNJ3) ESTs AU031435(E61570), partial (5%)
          Length = 809

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 22  LFLFCNYVLLGAASSCIFLTLSLRLVPSVCGFFLILLHIF 61
           LF+F    LL AASSC+FL  SL    S+   F++L+ I+
Sbjct: 656 LFIF----LL*AASSCVFLCKSLH-Y*SISFCFVMLIWIY 760


>TC8444 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit binding-protein
           beta subunit, chloroplast precursor (60 kDa chaperonin
           beta subunit) (CPN-60 beta), partial (53%)
          Length = 949

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 89  TAIFQGSVSVLVFTRTSDFLGEL----QSYVREEDGSVILKLSGGLAIL 133
           T +  GS    V  R +    ++    Q Y +E+    I KLSGG+A++
Sbjct: 603 TIVGDGSTQEAVNKRVAQIKNQIEAAEQDYEKEKLSERIAKLSGGVAVI 749


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,985,288
Number of Sequences: 28460
Number of extensions: 60733
Number of successful extensions: 488
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of query: 185
length of database: 4,897,600
effective HSP length: 85
effective length of query: 100
effective length of database: 2,478,500
effective search space: 247850000
effective search space used: 247850000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)