BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146940.2 + phase: 0 /pseudo
(1443 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV777209 212 4e-55
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 44 1e-04
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 42 7e-04
TC9283 42 7e-04
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 42 9e-04
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 40 0.003
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 38 0.010
BP052725 28 0.013
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 37 0.029
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 37 0.029
AV775181 36 0.049
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 36 0.049
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1... 36 0.049
TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kina... 35 0.064
BP034485 35 0.084
AV780663 35 0.084
BP030058 35 0.11
AV425102 34 0.19
AV427333 34 0.19
AV410275 33 0.24
>AV777209
Length = 393
Score = 212 bits (539), Expect = 4e-55
Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 1/131 (0%)
Frame = +2
Query: 931 ETNRVEESQSHVHRMYFIGPNTFSEPWQLPHTPSEQIHDIVYESAFNTFVDEINAIAAYQ 990
ETNR EESQSHVHR+YF GPNTFSEPW LPH P EQ+ DIVYE AFN FVDE N++A Y
Sbjct: 2 ETNRSEESQSHVHRLYFQGPNTFSEPWHLPHYPPEQVKDIVYEDAFNRFVDEFNSLATYN 181
Query: 991 WWEGAIYSALSFIGYPLACSW-QHCRRKLKLQRLREFVRSEYDHACLRSCRSRALYEGIK 1049
WWEG+IYS L I YPLA SW Q CRR +KLQ+LREFVRSEYDHACLRSCRSRALYEG+K
Sbjct: 182 WWEGSIYSILCIIAYPLAWSWLQRCRR-MKLQKLREFVRSEYDHACLRSCRSRALYEGMK 358
Query: 1050 VNATSDLMLAY 1060
V AT+DLML Y
Sbjct: 359 VAATTDLMLGY 391
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 44.3 bits (103), Expect = 1e-04
Identities = 41/122 (33%), Positives = 43/122 (34%)
Frame = +1
Query: 174 GGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESDYGGLGGG 233
GGGGG GGRG G Y +R +G GGGS YGG GGG
Sbjct: 322 GGGGGGGGRG----------------GGGYGGGGGRREGGYGGGGGSRG----YGGGGGG 441
Query: 234 IVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMTGSGMISACGGNGFAGGG 293
GG GG GG G GY G G GG GGG
Sbjct: 442 Y-----------------GGGGGGGYGGRREG------GYGGDGGGSRYGSGG----GGG 540
Query: 294 GG 295
GG
Sbjct: 541 GG 546
Score = 36.6 bits (83), Expect = 0.029
Identities = 28/77 (36%), Positives = 37/77 (47%), Gaps = 2/77 (2%)
Frame = +1
Query: 221 TSKESDYGGLGGGIVNMVVHKVLEMN-ASLLAEGGDGGTKGGGG-SGGSIYIKGYRMTGS 278
TS+E+ + G N + + + +N A GG GG +GGGG GG +G G
Sbjct: 229 TSEEAMRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGG 408
Query: 279 GMISACGGNGFAGGGGG 295
G GG G GGGGG
Sbjct: 409 GSRGYGGGGGGYGGGGG 459
Score = 33.1 bits (74), Expect = 0.32
Identities = 44/171 (25%), Positives = 53/171 (30%), Gaps = 10/171 (5%)
Frame = +1
Query: 624 CVEGGISYGTPDLPCE---------LGSGSGNGSSTGTTAGGGIIVIGSLEHPLSSLSIK 674
C GG+++ T E + S N TG + G G + S E S++
Sbjct: 88 CFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGM 267
Query: 675 GSVNADGENFDPTIRMEKFAIFDNFTGGPGGGSGGTILLFLHSLAIEESAILSSIGGYSG 734
DG N I N GGG GG G
Sbjct: 268 NGNELDGRN-----------ITVNEAQARGGGGGG-----------------------GG 345
Query: 735 ISGGG-GGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANG 784
GGG GGGGGR + G Y GG G G GG G G
Sbjct: 346 RGGGGYGGGGGRREGGYGGGGGSRGY-----------GGGGGGYGGGGGGG 465
Score = 30.0 bits (66), Expect = 2.7
Identities = 25/66 (37%), Positives = 27/66 (40%)
Frame = +1
Query: 592 GGMGRGNILTNGICSGGGHGGKGGKACSSDDCCVEGGISYGTPDLPCELGSGSGNGSSTG 651
GG RG G GGG GG GG+ EGG YG G G GS G
Sbjct: 403 GGGSRGYGGGGGGYGGGGGGGYGGRR--------EGG--YG----------GDGGGSRYG 522
Query: 652 TTAGGG 657
+ GGG
Sbjct: 523 SGGGGG 540
Score = 29.6 bits (65), Expect = 3.5
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +1
Query: 167 GTPQGVDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESD 226
G +G GGGGG+GG G +GG +R +G GG + S
Sbjct: 406 GGSRGYGGGGGGYGGGGGG-----------GYGG--------RREGGYGGDGGGSRYGSG 528
Query: 227 YGGLGG 232
GG GG
Sbjct: 529 GGGGGG 546
Score = 29.6 bits (65), Expect = 3.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 5/20 (25%)
Frame = -1
Query: 48 YSPPAPP-----PPPPHPPS 62
Y PP PP PPPP+PPS
Sbjct: 443 YPPPPPP*PRDPPPPPYPPS 384
Score = 29.3 bits (64), Expect = 4.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 48 YSPPAPPPPPPHPP 61
Y PP PPPPP PP
Sbjct: 362 YPPPPRPPPPPPPP 321
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 42.0 bits (97), Expect = 7e-04
Identities = 45/139 (32%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Frame = -2
Query: 157 MAGSPPPQTSGTPQGVDGGGGGHGGRGASCLEDTAKLPEDVWGG--DAYSWATLQRPESF 214
+ G P +G G +GGGGG GG G GG D W L
Sbjct: 824 IGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGEGGCFDGGGWNGL-GINGG 648
Query: 215 GSGGGSTSKESDYGGLGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYR 274
G GGG GGLGG N + GG GG G G SGG + KG
Sbjct: 647 GLGGG*NGLGISGGGLGG------------*NGLGKSGGGLGGWNGSGKSGGGLG*KGLG 504
Query: 275 MTGSGMISACGGNGFAGGG 293
+ G G G G GGG
Sbjct: 503 IRGGG----*NGLGINGGG 459
Score = 34.7 bits (78), Expect = 0.11
Identities = 53/186 (28%), Positives = 62/186 (32%), Gaps = 4/186 (2%)
Frame = -2
Query: 603 GICSGGGHGGKGGKACSSDDCCVEGGISYGTPDLPCELGSGSGNGSSTGTTAGGGIIVIG 662
G+ GG +GGKGGK GG G G G G G T GG
Sbjct: 818 GLPGGGNNGGKGGK---------NGG-----------GGGGGGGGVKPGITIGG------ 717
Query: 663 SLEHPLSSLSIKGSVNADGENFDPTIRMEKFAIFD----NFTGGPGGGSGGTILLFLHSL 718
KG+ G FD N G GGG GG + L
Sbjct: 716 -----------KGNKGEGG-------------CFDGGGWNGLGINGGGLGGG----*NGL 621
Query: 719 AIEESAILSSIGGYSGISGGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIG 778
I +GG +G+ GGG GG W+G + G G KG GI
Sbjct: 620 GISG----GGLGG*NGLGKSGGGLGG-----WNG----------SGKSGGGLG*KGLGIR 498
Query: 779 GSGANG 784
G G NG
Sbjct: 497 GGG*NG 480
Score = 32.7 bits (73), Expect = 0.42
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -2
Query: 730 GGYSGISGGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANG 784
GG G +GGGGGGGG G+ +P T+ G G+G G G NG
Sbjct: 794 GGKGGKNGGGGGGGG------GGV------KPGITIGGKGNKGEGGCFDGGGWNG 666
Score = 28.5 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Frame = +1
Query: 43 LFHQDYSPPAPPP-------PPPHPP 61
LF + PP+PPP PPP PP
Sbjct: 574 LFPNPFQPPSPPPLIPNPFQPPPSPP 651
>TC9283
Length = 1307
Score = 42.0 bits (97), Expect = 7e-04
Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -2
Query: 242 VLEMNAS--LLAEGGDGGTKGGGG--SGGSIYIKGYRMTGSGMISACGGNGFAGGGGGR 296
VLE N S + AE G GG +GGGG SG + G T S GG G GGGGGR
Sbjct: 232 VLEENPSEVIFAEDGAGGVRGGGGGVSGHFQGVGGSGATDSNDSGEPGGGGGGGGGGGR 56
Score = 30.8 bits (68), Expect = 1.6
Identities = 28/82 (34%), Positives = 37/82 (44%), Gaps = 1/82 (1%)
Frame = -2
Query: 665 EHPLSSLSIKGSVNADGENFDPTIRMEKFAIFDNFTGGPGGGSGGTILLFLHSLAIEES- 723
E P S + ++N G + FA ++ GG GG GG + H + S
Sbjct: 286 ELPFEITSFECNLNRIGTVLEENPSEVIFA--EDGAGGVRGGGGG---VSGHFQGVGGSG 122
Query: 724 AILSSIGGYSGISGGGGGGGGR 745
A S+ G G GGGGGGGGR
Sbjct: 121 ATDSNDSGEPGGGGGGGGGGGR 56
Score = 30.0 bits (66), Expect = 2.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 43 LFHQDYSPPAPPPPPPHPPSVSCVDDL 69
L H+ PP PPPPP P S V L
Sbjct: 48 LLHRPPPPPPPPPPPGSPESFESVAPL 128
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 41.6 bits (96), Expect = 9e-04
Identities = 30/80 (37%), Positives = 31/80 (38%)
Frame = +3
Query: 217 GGGSTSKESDYGGLGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMT 276
GGG+ GG GGG G GG GGGG GG Y G
Sbjct: 279 GGGAGGGGRGGGGYGGG-------------------GYGGGGYGGGGRGGGGYGGGGGYG 401
Query: 277 GSGMISACGGNGFAGGGGGR 296
GSG GG G G GGGR
Sbjct: 402 GSGGYGGGGGYGGGGRGGGR 461
Score = 37.4 bits (85), Expect = 0.017
Identities = 41/129 (31%), Positives = 43/129 (32%)
Frame = +3
Query: 167 GTPQGVDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESD 226
GT +G GGGG GG G +GG Y GGG
Sbjct: 267 GTRRGGGAGGGGRGGGG--------------YGGGGYG------------GGG------- 347
Query: 227 YGGLGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMTGSGMISACGG 286
YGG G G GG GGGG GGS GY G G G
Sbjct: 348 YGGGGRG---------------------GGGYGGGGGYGGS---GGY--GGGGGYGGGGR 449
Query: 287 NGFAGGGGG 295
G GGGGG
Sbjct: 450 GGGRGGGGG 476
Score = 36.2 bits (82), Expect = 0.038
Identities = 41/129 (31%), Positives = 43/129 (32%)
Frame = +3
Query: 167 GTPQGVDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESD 226
G G GGGG+GG G +GG Y G GGG
Sbjct: 282 GGAGGGGRGGGGYGGGG--------------YGGGGYGGG--------GRGGGG------ 377
Query: 227 YGGLGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMTGSGMISACGG 286
YGG GG GG GG GGGG GG G G GG
Sbjct: 378 YGGGGG-------------------YGGSGGYGGGGGYGGG---------GRG-----GG 458
Query: 287 NGFAGGGGG 295
G GGGGG
Sbjct: 459 RG--GGGGG 479
Score = 32.3 bits (72), Expect = 0.55
Identities = 27/71 (38%), Positives = 28/71 (39%)
Frame = +3
Query: 587 GMGCTGGMGRGNILTNGICSGGGHGGKGGKACSSDDCCVEGGISYGTPDLPCELGSGSGN 646
G G GG GRG G GGG+GG GG GG YG G G G
Sbjct: 336 GGGGYGGGGRGG---GGYGGGGGYGGSGGYG---------GGGGYG--------GGGRGG 455
Query: 647 GSSTGTTAGGG 657
G G GGG
Sbjct: 456 GRGGG---GGG 479
Score = 30.0 bits (66), Expect = 2.7
Identities = 29/91 (31%), Positives = 33/91 (35%), Gaps = 4/91 (4%)
Frame = +3
Query: 571 RARTISIESSGTISASGM---GCTGGMGRGNI-LTNGICSGGGHGGKGGKACSSDDCCVE 626
RA+ I + + G G GG GRG G GGG+GG G
Sbjct: 219 RAKAIEVTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGG-----------R 365
Query: 627 GGISYGTPDLPCELGSGSGNGSSTGTTAGGG 657
GG Y G G G G S G GGG
Sbjct: 366 GGGGY---------GGGGGYGGSGGYGGGGG 431
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/52 (38%), Positives = 22/52 (41%)
Frame = +3
Query: 737 GGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANGTISG 788
GGG GGGGR + G G G GG G+G GG G G G
Sbjct: 279 GGGAGGGGRGGGGYGGGGYG----------GGGYGGGGRGGGGYGGGGGYGG 404
Score = 29.6 bits (65), Expect = 3.5
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = +3
Query: 730 GGYSGISGGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANG 784
GGY G GGGG GG + SG G G GG G+G G G G
Sbjct: 342 GGYGGGGRGGGGYGGGGGYGGSGGYGG----------GGGYGGGGRGGGRGGGGG 476
Score = 29.6 bits (65), Expect = 3.5
Identities = 29/83 (34%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Frame = +3
Query: 701 GGPGGGSGGTILLFLHSLAIEESAILSSIGGYSG--ISGGGGGGGGRIHFHWSGIPTGDV 758
G GGG GG GGY G GGG GGGGR G G
Sbjct: 285 GAGGGGRGG--------------------GGYGGGGYGGGGYGGGGR---GGGGYGGGGG 395
Query: 759 YQPIATVKGDIQGGKGKGIGGSG 781
Y G GG G G GG G
Sbjct: 396 YGG----SGGYGGGGGYGGGGRG 452
Score = 29.6 bits (65), Expect = 3.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 48 YSPPAPPPPPPHPP 61
Y PP P PPPP PP
Sbjct: 397 YPPPPPYPPPPRPP 356
Score = 28.5 bits (62), Expect = 7.9
Identities = 14/27 (51%), Positives = 15/27 (54%), Gaps = 1/27 (3%)
Frame = -1
Query: 50 PPAPPPPPPHPPSVSCVD-DLGGVGSL 75
PP PPPP P P V C LG V S+
Sbjct: 310 PPRPPPPAPPPRRVPCTAWPLGPVTSI 230
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/42 (47%), Positives = 21/42 (49%)
Frame = +2
Query: 254 GDGGTKGGGGSGGSIYIKGYRMTGSGMISACGGNGFAGGGGG 295
G GG GGGG GG GY G S GG G+ G GGG
Sbjct: 596 GRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGG 721
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/118 (27%), Positives = 39/118 (32%)
Frame = +2
Query: 170 QGVDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESDYGG 229
+G GGGGG+GG +R +G GGGS GG
Sbjct: 599 RGGGGGGGGYGGG--------------------------RREGGYGGGGGSRYSGGGGGG 700
Query: 230 LGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMTGSGMISACGGN 287
GG GG GG + GGG G G R G G + GG+
Sbjct: 701 YGGS-----------------GGGGYGGRREGGGGG----YGGSREGGGGSRYSSGGS 811
Score = 32.7 bits (73), Expect = 0.42
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Frame = +2
Query: 207 TLQRPESFGSGGGSTSKESDYGGLGGGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGG 266
T+ ++ G GGG GG GGG GG GG++ GG GG
Sbjct: 572 TVNEAQARGRGGGGGG-----GGYGGGRREG-------------GYGGGGGSRYSGGGGG 697
Query: 267 SIYIKGYRMTGSGMISA---CGGNGFA----GGGGGRVS 298
GY +G G GG G+ GGGG R S
Sbjct: 698 -----GYGGSGGGGYGGRREGGGGGYGGSREGGGGSRYS 799
Score = 32.0 bits (71), Expect = 0.71
Identities = 39/140 (27%), Positives = 49/140 (34%), Gaps = 5/140 (3%)
Frame = +2
Query: 646 NGSSTGTTAGGGIIVIGSLEHPLSSLSIKGSVNADGENFDPTIRMEKFAIFDNFTGGPGG 705
N TG + G G + S + ++ + DG N + + + GG GG
Sbjct: 455 NDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRN----VTVNEAQARGRGGGGGGG 622
Query: 706 GSGGTILLFLHSLAIEESAILSSIGGYSG-----ISGGGGGGGGRIHFHWSGIPTGDVYQ 760
G GG GGY G SGGGGGG G SG G Y
Sbjct: 623 GYGGG----------------RREGGYGGGGGSRYSGGGGGGYG-----GSG---GGGYG 730
Query: 761 PIATVKGDIQGGKGKGIGGS 780
G GG +G GGS
Sbjct: 731 GRREGGGGGYGGSREGGGGS 790
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 38.1 bits (87), Expect = 0.010
Identities = 46/171 (26%), Positives = 62/171 (35%), Gaps = 47/171 (27%)
Frame = -2
Query: 171 GVDGGGGGHG----GRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGST----- 221
GV GGGGG G GAS DV G D+ L E G GGG
Sbjct: 671 GVGGGGGGGDRVGVGGGAS---------SDVSGVDSRGSGVLSI-EDIGRGGGGMVATPY 522
Query: 222 --SKESDYGGLGGGIVNMVVHKVL-----------------EMNASLLAEGGDGGTK--- 259
+ GG G G+ +VV ++ ++ + +++GG+GG
Sbjct: 521 LGGGDGGCGGEGSGVWVIVVRELGGDGVVSDVRCVEGGGSGALSVADMSKGGEGGMVVTP 342
Query: 260 ----GGGGSGGS------------IYIKGYRMTGSGMISACGGNGFAGGGG 294
GGGG GG I + G G++ G G GGGG
Sbjct: 341 YFGGGGGGCGGDGREQGKEASPDIIALPAITEAGGGVVGGRDGGGGCGGGG 189
Score = 35.0 bits (79), Expect = 0.084
Identities = 54/193 (27%), Positives = 71/193 (35%), Gaps = 11/193 (5%)
Frame = -2
Query: 575 ISIESSGTISASGMGCTGGMGRGNILTNGICSGGGHGGKGGKACSSDDCCV-EGGISYGT 633
+ SG +S +G GG G + T + GGG GG GG+ V E G
Sbjct: 599 VDSRGSGVLSIEDIGRGGG---GMVATPYL--GGGDGGCGGEGSGVWVIVVRELGGDGVV 435
Query: 634 PDLPCELGSGSGNGSSTGTTAGG--GIIVIGSLEHPLSSLSIKGSVNADGENFD----PT 687
D+ C G GSG S + GG G++V G + D P
Sbjct: 434 SDVRCVEGGGSGALSVADMSKGGEGGMVVTPYFGGGGGGCGGDGREQGKEASPDIIALPA 255
Query: 688 IRMEKFAIFDNFTGGPGGGSGGTILLFLHS----LAIEESAILSSIGGYSGISGGGGGGG 743
I + GG G G GG + L E L +I G + GGGGGG
Sbjct: 254 ITEAGGGVVGGRDGGGGCGGGGEGEQGRETSPTDLETFEIIALPAIKG----AEGGGGGG 87
Query: 744 GRIHFHWSGIPTG 756
GR + G+ G
Sbjct: 86 GRALSDFGGVEGG 48
Score = 35.0 bits (79), Expect = 0.084
Identities = 25/68 (36%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 167 GTPQGVDGGGG-GHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKES 225
G G DGGGG G GG G E + P D+ + + ++ E G GGG S
Sbjct: 236 GVVGGRDGGGGCGGGGEGEQGRETS---PTDLETFEIIALPAIKGAEGGGGGGGRAL--S 72
Query: 226 DYGGLGGG 233
D+GG+ GG
Sbjct: 71 DFGGVEGG 48
>BP052725
Length = 334
Score = 28.5 bits (62), Expect(2) = 0.013
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 33 EFSVTDLDWNLFHQDYSPPAPPPPPP 58
EFS+ D + DY P PPPPPP
Sbjct: 117 EFSI*D-----YIHDYISPPPPPPPP 55
Score = 28.1 bits (61), Expect(2) = 0.013
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 51 PAPPPPPPHPPSVSCV 66
PAPPPPPP P C+
Sbjct: 79 PAPPPPPPLPLGGLCI 32
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 36.6 bits (83), Expect = 0.029
Identities = 33/108 (30%), Positives = 41/108 (37%)
Frame = -2
Query: 172 VDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPESFGSGGGSTSKESDYGGLG 231
V+GGGGG GG GA E+ A GGD Y G G+ + E
Sbjct: 253 VEGGGGGAGGEGAGGGEEVAA------GGDGY------------GGEGTVAAEE------ 146
Query: 232 GGIVNMVVHKVLEMNASLLAEGGDGGTKGGGGSGGSIYIKGYRMTGSG 279
EGG+GG+ GGG SG +G + GSG
Sbjct: 145 -------------------REGGEGGSGGGG*SGEGASEEGS*V*GSG 59
Score = 28.9 bits (63), Expect = 6.0
Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 3/45 (6%)
Frame = -2
Query: 253 GGDGGTKGGGGSGGSIYIKGYRMTGSGMISA---CGGNGFAGGGG 294
GG GG GGG + GY G G ++A GG G +GGGG
Sbjct: 238 GGAGGEGAGGGEEVAAGGDGY--GGEGTVAAEEREGGEGGSGGGG 110
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 36.6 bits (83), Expect = 0.029
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = -1
Query: 706 GSGGTILLFLH--SLAIEESAILSSIGGYSGISGGGGGGGG 744
G GG ++ F+ ++A+ E L ++ G GISGGG GGGG
Sbjct: 276 GGGGLVVDFVDGAAVAVAEDGELFNVAGDDGISGGGRGGGG 154
>AV775181
Length = 497
Score = 35.8 bits (81), Expect = 0.049
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 4 FRFQSLCFFAI-AVVLFARDCVCDELEEHEEFS-VTDLDWNL 43
FRF LCF AI +VV+F R C CDE F V DL ++L
Sbjct: 112 FRFYHLCFLAILSVVVFVRQCACDESTVDRIFQHVRDLFFSL 237
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 35.8 bits (81), Expect = 0.049
Identities = 46/156 (29%), Positives = 54/156 (34%), Gaps = 12/156 (7%)
Frame = -1
Query: 153 NTTAMAGSPPPQTSGTPQGVDGGGGGHGGRGASCLEDTAKLPEDVWGGDAYSWATLQRPE 212
++T + PP Q + P G GG G GGRG +GG R
Sbjct: 422 HSTERSAPPPQQAAAAPGG--GGPGPQGGRG--------------YGGPPQGG----RGG 303
Query: 213 SFGSGGGSTSKESDYGGLGGGIVNMVVHKVLEMN------------ASLLAEGGDGGTKG 260
+G GGG YGG G G H V + +GG GG G
Sbjct: 302 GYGGGGGP-----GYGGGGRG-----GHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSG 153
Query: 261 GGGSGGSIYIKGYRMTGSGMISACGGNGFAGGGGGR 296
GGG GY G G GG G G G GR
Sbjct: 152 GGG--------GY---GGG-----GGRGGGGMGSGR 93
Score = 32.3 bits (72), Expect = 0.55
Identities = 24/65 (36%), Positives = 27/65 (40%), Gaps = 5/65 (7%)
Frame = -1
Query: 730 GGYSGISGGGGGGGGRIHFHWSGIPTGDV-----YQPIATVKGDIQGGKGKGIGGSGANG 784
GGY G G G GGGGR G+P YQ QGG+G GG G G
Sbjct: 305 GGYGGGGGPGYGGGGR---GGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYG 135
Query: 785 TISGK 789
G+
Sbjct: 134 GGGGR 120
Score = 30.8 bits (68), Expect = 1.6
Identities = 34/119 (28%), Positives = 38/119 (31%)
Frame = -1
Query: 626 EGGISYGTPDLPCELGSGSGNGSSTGTTAGGGIIVIGSLEHPLSSLSIKGSVNADGENFD 685
+GG YG P + G G G G G GGG G H + G G
Sbjct: 350 QGGRGYGGPP---QGGRGGGYGGGGGPGYGGG----GRGGHGVPQQQYGGPPEYQGRGRG 192
Query: 686 PTIRMEKFAIFDNFTGGPGGGSGGTILLFLHSLAIEESAILSSIGGYSGISGGGGGGGG 744
+ GG GG SGG GGY G G GGGG G
Sbjct: 191 GPSQQ----------GGRGGYSGGG-------------------GGYGGGGGRGGGGMG 102
Score = 29.6 bits (65), Expect = 3.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 50 PPAPPPPPPHPPSVSC 65
PP PPPPP +PP C
Sbjct: 133 PPYPPPPPLYPPRPPC 180
Score = 28.5 bits (62), Expect = 7.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 50 PPAPPPPPPHPP 61
PP PPPPP+PP
Sbjct: 112 PPPRPPPPPYPP 147
>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
(Forkhead-related protein FKHL2) (Transcription factor
BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
Length = 1032
Score = 35.8 bits (81), Expect = 0.049
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Frame = -1
Query: 649 STGTTAGGGIIVIGS----LEHPLSSLSIKGSVNADGENFDPT-IRMEKFAIFDNFTGGP 703
STG + +V+GS LE L + + S A + F+ +R+++ + + F G
Sbjct: 432 STGISGEDVFLVVGSWGKLLEPFLGDVDLAVS-GASVDLFEAVGVRVDEALVDEGFEDGV 256
Query: 704 GGGSGGTILLFLHSLAIE-ESAILSSIGGYSGISGGGGGGGGR 745
G + +LL E A+ +GG G GGGGGGG R
Sbjct: 255 AGETNHVVLLAFEVDGGEAHDAVGDLLGGGGGGGGGGGGGGAR 127
Score = 30.8 bits (68), Expect = 1.6
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = +2
Query: 49 SPPAPPPPPPHPP 61
+PP PPPPPP PP
Sbjct: 131 APPPPPPPPPPPP 169
Score = 30.4 bits (67), Expect = 2.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 50 PPAPPPPPPHPP 61
PP PPPPPP PP
Sbjct: 140 PPPPPPPPPPPP 175
Score = 30.4 bits (67), Expect = 2.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 50 PPAPPPPPPHPP 61
PP PPPPPP PP
Sbjct: 137 PPPPPPPPPPPP 172
Score = 30.0 bits (66), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 50 PPAPPPPPPHPPSVSC 65
PP PPPPP P+ SC
Sbjct: 152 PPPPPPPPRRSPTASC 199
>TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kinase,
chloroplast precursor , partial (86%)
Length = 1857
Score = 35.4 bits (80), Expect = 0.064
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 50 PPAPPPPPPHPPSVS 64
PP PPPPPPHPP S
Sbjct: 170 PPPPPPPPPHPPPAS 214
>BP034485
Length = 485
Score = 35.0 bits (79), Expect = 0.084
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Frame = +3
Query: 199 GGDAYSWATLQRPESFGSGGGSTS-KESDYGGLGGGIVNMVVHKVLEMNASLLAEGGDGG 257
GG A + ++ +GGG+ KE GG GGG ++ + + + + + G GG
Sbjct: 153 GGGGGETANKNKNKNKNNGGGNNKGKEGKKGGGGGGKLDKIDFDFQDFD--IPSHGKSGG 326
Query: 258 TKGGGGSGGSIYIKGYRMTGSGMISACGGNG 288
GGGG G+ K G G+ GNG
Sbjct: 327 KGGGGGGKGN---KNGHDHGHGIGGNMNGNG 410
Score = 31.6 bits (70), Expect = 0.93
Identities = 50/181 (27%), Positives = 62/181 (33%), Gaps = 10/181 (5%)
Frame = +3
Query: 641 GSGSGNGSS-----TGTTAGGGIIV--IGSLEHPLSSLSIKGSVNADGENFDPTIRMEKF 693
G G G+ SS T GGG +V +G L S KG GE + K
Sbjct: 39 GGGGGDSSSDKKKKTKDKNGGGFLVKFLG-----LGKKSKKGGGGGGGETANKNKNKNKN 203
Query: 694 AIFDNFTGGPG---GGSGGTILLFLHSLAIEESAILSSIGGYSGISGGGGGGGGRIHFHW 750
N G G GG GG L + + G SG GGGGGG G + H
Sbjct: 204 NGGGNNKGKEGKKGGGGGGK----LDKIDFDFQDFDIPSHGKSGGKGGGGGGKGNKNGH- 368
Query: 751 SGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANGTISGKACPKGLYGTFCEECPPGTYKN 810
G GIGG+ NG G P G+ + P G +N
Sbjct: 369 ---------------------DHGHGIGGN-MNGN-GGHMDPMSQLGSMGQMGPMGQMRN 479
Query: 811 V 811
+
Sbjct: 480 M 482
Score = 30.0 bits (66), Expect = 2.7
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +3
Query: 218 GGSTSKESDYGGLGGGIVNMVVHKVL--EMNASLLAEG---GDGGTKGGGGSGGSIYIKG 272
GG+ SKE G GGG + K + L + G KGGGG GG K
Sbjct: 6 GGNKSKEGKQKGGGGGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKN 185
Query: 273 -YRMTGSGMISACGGNGFAGGGGG 295
+ +G + G G GGGGG
Sbjct: 186 KNKNKNNGGGNNKGKEGKKGGGGG 257
>AV780663
Length = 568
Score = 35.0 bits (79), Expect = 0.084
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -2
Query: 215 GSGGGSTSKESDYGGLGGGIVNMVVH----KVLEMNASLLAEGGDGGTKGGGGSGGSIYI 270
G G + ++++ + G G +++M H K + + S GG GG GGGGSGG
Sbjct: 255 GDVGAALAEDAVHEG-GLAVIDMSDHCHVAKAVGVEGS---SGGGGGRGGGGGSGG---- 100
Query: 271 KGYRMTGSGMISACGGNGFAGG 292
KG G GG GF+GG
Sbjct: 99 KGA*EEARGRRRGRGG*GFSGG 34
>BP030058
Length = 455
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/48 (45%), Positives = 23/48 (47%)
Frame = +1
Query: 252 EGGDGGTKGGGGSGGSIYIKGYRMTGSGMISACGGNGFAGGGGGRVSV 299
EGG GG GGG GG + GSG GG G GGGGG V
Sbjct: 310 EGGGGGGGDGGGGGGDGH-------GSG---GGGGEGDGGGGGGSPQV 423
Score = 31.6 bits (70), Expect = 0.93
Identities = 23/65 (35%), Positives = 26/65 (39%)
Frame = +1
Query: 730 GGYSGISGGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANGTISGK 789
GG G GGG GGGG H SG GG G+G GG G S +
Sbjct: 304 GGEGGGGGGGDGGGGGGDGHGSG------------------GGGGEGDGGGGGG---SPQ 420
Query: 790 ACPKG 794
P+G
Sbjct: 421 VSPQG 435
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/58 (37%), Positives = 22/58 (37%)
Frame = +1
Query: 731 GYSGISGGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQGGKGKGIGGSGANGTISG 788
GY G G GGGGGG GD G GG G G GG G G G
Sbjct: 289 GYFGGGGEGGGGGG-----------GD---------GGGGGGDGHGSGGGGGEGDGGG 402
Score = 30.0 bits (66), Expect = 2.7
Identities = 33/102 (32%), Positives = 38/102 (36%), Gaps = 15/102 (14%)
Frame = +1
Query: 571 RARTISIESSGTISAS------GMGCTG-----GMGRGNILT----NGICSGGGHGGKGG 615
RART +I + +A G+GC G G G L G GGG GG GG
Sbjct: 148 RARTSNIPTPLFSAAE**YIQDGLGCPGTYMILGGGGDKGLQFCGQEGYFGGGGEGGGGG 327
Query: 616 KACSSDDCCVEGGISYGTPDLPCELGSGSGNGSSTGTTAGGG 657
+GG G G GSG G G GGG
Sbjct: 328 GG--------DGGGGGGD-------GHGSGGGGGEGDGGGGG 408
Score = 29.3 bits (64), Expect = 4.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 49 SPPAPPPPPPHPPSVS 64
SPP PPP PP PP S
Sbjct: 356 SPPPPPPSPPPPPPPS 309
Score = 28.9 bits (63), Expect = 6.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 51 PAPPPPPPHPP 61
P+PPPPPP PP
Sbjct: 359 PSPPPPPPSPP 327
Score = 28.9 bits (63), Expect = 6.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 49 SPPAPPPPPPHPP 61
SPP PPPP P PP
Sbjct: 335 SPPPPPPPSPPPP 297
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/36 (41%), Positives = 16/36 (43%)
Frame = +1
Query: 260 GGGGSGGSIYIKGYRMTGSGMISACGGNGFAGGGGG 295
GGGG G + G G GG G GGGGG
Sbjct: 247 GGGGDKGLQFCGQEGYFGGGGEGGGGGGGDGGGGGG 354
>AV425102
Length = 426
Score = 33.9 bits (76), Expect = 0.19
Identities = 14/32 (43%), Positives = 17/32 (52%)
Frame = +2
Query: 50 PPAPPPPPPHPPSVSCVDDLGGVGSLDTTCQI 81
PP PPPPPP PP +S L + C+I
Sbjct: 53 PPPPPPPPPPPPEISAS*PLKSATTPPNGCRI 148
Score = 28.5 bits (62), Expect = 7.9
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -1
Query: 725 ILSSIGGYSG-ISGGGGGGGG 744
+++ + GY ISGGGGGGGG
Sbjct: 126 VVADLRGYEAEISGGGGGGGG 64
>AV427333
Length = 387
Score = 33.9 bits (76), Expect = 0.19
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 254 GDGGTKGGGGSGGSIYIKGYRMTGSGMISACG-GNGFAGGGGGRVSVDVFSRHDEPKIYV 312
G+GG+ GGGG R G G+I CG G G GGGG D D+
Sbjct: 364 GEGGSGGGGG----------RTCGGGVIG*CGDGGGRTCGGGGVNG*DDGGGGDD----- 230
Query: 313 HGGSSLACPENAGA 326
G CP GA
Sbjct: 229 --GGGEGCPRGGGA 194
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/70 (31%), Positives = 26/70 (36%), Gaps = 12/70 (17%)
Frame = -3
Query: 737 GGGGGGGGRIHFHWSGIPTGDVYQPIATVKGDIQG----GKGKGIGGSGANG-------- 784
GG GGGGGR T G + G G G+ GG G NG
Sbjct: 358 GGSGGGGGR------------------TCGGGVIG*CGDGGGRTCGGGGVNG*DDGGGGD 233
Query: 785 TISGKACPKG 794
G+ CP+G
Sbjct: 232 DGGGEGCPRG 203
>AV410275
Length = 431
Score = 33.5 bits (75), Expect = 0.24
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 46 QDYSPPAPPPPPPHPPSVS 64
Q PP PPPPPP PPS S
Sbjct: 28 QSLPPPPPPPPPPPPPSWS 84
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,228,596
Number of Sequences: 28460
Number of extensions: 518312
Number of successful extensions: 11360
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 5325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9049
length of query: 1443
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1341
effective length of database: 1,994,680
effective search space: 2674865880
effective search space used: 2674865880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146940.2