BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146854.1 + phase: 0 /pseudo
(1390 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 43 4e-04
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 40 0.002
BP075943 39 0.004
AU088980 38 0.010
TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 38 0.010
TC11910 similar to GB|CAA54498.1|602891|SCIILDNA YBL0422 {Saccha... 38 0.012
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 37 0.016
TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 37 0.028
TC7818 UP|Q94AY7 (Q94AY7) AT4g38510/F20M13_70, partial (87%) 35 0.081
TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 35 0.081
AV427333 35 0.11
TC14145 similar to UP|Q7XXS4 (Q7XXS4) Thiamine biosynthetic enzy... 35 0.11
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 34 0.18
TC8854 weakly similar to UP|Q9LEU4 (Q9LEU4) CCR4-associated fact... 34 0.18
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti... 34 0.18
BP056337 33 0.24
BP037950 33 0.24
TC11001 homologue to UP|Q9LYF9 (Q9LYF9) Clathrin binding protein... 33 0.31
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 33 0.31
BP046094 33 0.40
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 42.7 bits (99), Expect = 4e-04
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Frame = +3
Query: 846 HNHHLLSH-----HLHSPLL-HNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLL 899
HNHH H H PLL H L LL+ L LL LP + LH H + ++HL
Sbjct: 183 HNHHPTLQPPPLLHPHQPLLNHLLLSLLLLPLNLLLLPFNLLLHPHPHHHRLSLHLPQYP 362
Query: 900 ITVSVNIPFPILFHMLVYLTLILFLLCLLLLILNQNPMMRQSNMTAGNKQCRLNLMLLNR 959
+ ++ P+L + V L+L LL LLL+ +P + ++Q L L LL R
Sbjct: 363 LRHQFSL--PLLLPLPVLHPLLLLLLSPLLLLPRLHPQQHLLRHSPPSRQL-LPLRLLPR 533
Score = 30.4 bits (67), Expect = 2.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 818 HHPLLP-LKIGNIFLPLPLIFLILRILIF---HNHHLLSHHLHSPLLHNLHHYLLMSLYL 873
H PLL L + + LPL L+ L +L+ H+H L H PL H LL+ L +
Sbjct: 228 HQPLLNHLLLSLLLLPLNLLLLPFNLLLHPHPHHHRLSLHLPQYPLRHQFSLPLLLPLPV 407
Query: 874 L 874
L
Sbjct: 408 L 410
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Frame = +2
Query: 814 LTIHHHPL-----------LPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHN 862
L +HHHP L ++ LPL+ + H+HH+L HHL + H
Sbjct: 20 LLLHHHPYQNHTIINLPHHLHTTTNHLHHHLPLLPPHTTTNLPHHHHIL-HHLPTTTNHL 196
Query: 863 LHHYLLMSLYLLELPSEIKLHLHIYMTTFAM---HLFLLLITVSVNIPFPILFHMLVYLT 919
HH + L + + LHLH TT + HL L++ + N P H+L LT
Sbjct: 197 HHHPRHLPLLTITNLPHLHLHLHRLHTTTKVLLHHLPFLILPTTTN-PLHHQRHLLHLLT 373
Query: 920 LILFLL 925
++ LL
Sbjct: 374 IM*VLL 391
Score = 33.9 bits (76), Expect = 0.18
Identities = 29/89 (32%), Positives = 41/89 (45%), Gaps = 9/89 (10%)
Frame = +2
Query: 816 IHHHP--LLPLKIGNIFLPLPLIFLILRI-LIFHNHHLLSHHLHSPLLHNLHHYLLMSLY 872
+HH P +LP + L+ L+ + ++ H HHLL HH +HH+LL L
Sbjct: 293 LHHLPFLILPTTTNPLHHQRHLLHLLTIM*VLLHPHHLLPHHT------TMHHHLL--LP 448
Query: 873 LLELPSEIKLHL------HIYMTTFAMHL 895
L+LP HL H + TT HL
Sbjct: 449 HLQLPHTFTNHLPHQ*NCHHHHTTTHHHL 535
Score = 32.7 bits (73), Expect = 0.40
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +2
Query: 812 YYLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHH 865
++ T+HHH LLP ++ LP + H+HH +HH P LH L H
Sbjct: 413 HHTTMHHHLLLP----HLQLPHTFTNHLPHQ*NCHHHHTTTHHHLLPPLHPLPH 562
>BP075943
Length = 547
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/78 (34%), Positives = 44/78 (55%)
Frame = -1
Query: 1118 IALLHFLFMLMI*SLLEILSLKLISSRMFYTKPSKSKTLVF*NIF*VLKLHTPKMVSLFA 1177
+ LL +MLM+ LE++ ++ S + + S SKT V +IF*VLKLH P
Sbjct: 535 VLLLLCFYMLMMFFWLEMICMRFNLSNLHFMISSGSKTWVRPSIF*VLKLHGPHPALFSI 356
Query: 1178 KGSIVWICYKIQVYLAQS 1195
+ S+++ ++IQ LA +
Sbjct: 355 RESMLFN*FQIQDTLASN 302
>AU088980
Length = 360
Score = 38.1 bits (87), Expect = 0.010
Identities = 35/110 (31%), Positives = 49/110 (43%)
Frame = +3
Query: 690 RENINTFSMLLELCCFNPNFPMFSGHMLFCIQFFS*IEFQLLFSNINLLIMFYMIHCLIF 749
RENI ML E CF G +L + I + F + LI ++ L++
Sbjct: 15 RENIGIS*MLQEP*CFILICLKICGLLLLNMLPI*SIXYHHRF*RASALINSLIMTLLLY 194
Query: 750 ILSKFLVAFVMLLHFKLIEQNYNLEPESVFS*VTSLDSKVQFFLTYIPEK 799
KFLV FV+LL +N LEP +VFS V L+ ++P K
Sbjct: 195 *T*KFLVPFVILLLLLTXGRNLILEPANVFSLVLKLELXAILLWIFLPXK 344
>TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (66%)
Length = 1158
Score = 38.1 bits (87), Expect = 0.010
Identities = 37/102 (36%), Positives = 50/102 (48%), Gaps = 26/102 (25%)
Frame = +2
Query: 811 *YYLTIHHHPL--LPLKIGNIFL------PLPLIFLILRI---------LIFH-----NH 848
*++L +HPL L L N+ L L L+F L + L+FH +H
Sbjct: 203 *HHLMCQNHPLFTLHLMFQNLLL*NHQLFTLHLMFQHLLL*NHQLFTLHLMFHYPQLYHH 382
Query: 849 HLLSHHLHSP--LLHNLHHYL--LMSLYLLELPSEIKLHLHI 886
HLL HHLH P LLH+LH +L L LL P ++H H+
Sbjct: 383 HLLLHHLHQPHRLLHHLHQHLPWLHHQALLRKP---RVHHHL 499
>TC11910 similar to GB|CAA54498.1|602891|SCIILDNA YBL0422 {Saccharomyces
cerevisiae;} , partial (6%)
Length = 638
Score = 37.7 bits (86), Expect = 0.012
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 835 LIFLILRILIFHNHHLLS-----HHLHSPLLHNLHHYLLMSLYLLELPSEI 880
L L+L +L+ H+ HLL HH+H L HNL H+L S L P+ +
Sbjct: 20 LYLLLLSLLLLHHLHLLQPRFTFHHVHLTLFHNLLHHLHPSPTSLPFPASL 172
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 37.4 bits (85), Expect = 0.016
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Frame = +2
Query: 793 LTYIPEKSLFQEML--FSMN*YYLTIHHH---PLLPLKIGNIFLPLPLI-------FLIL 840
L + E LFQ+ L M + + +HHH PLL L L LPL+ +L
Sbjct: 110 LLLLQEVQLFQKFLNQLVMFPFLVLLHHHHHNPLLHLYPQPHLLRLPLLQEVQLCQVKLL 289
Query: 841 RILIFHNHHLLSHHLHSPLLHN--LHHYLLMSLYLLELPSEIKLH 883
+++FH+HH +HHL LL + L YLL+ LY +I+LH
Sbjct: 290 FLVLFHHHH--NHHL---LLQSMALQPYLLLLLY--SCLQQIELH 403
Score = 33.1 bits (74), Expect = 0.31
Identities = 31/104 (29%), Positives = 51/104 (48%), Gaps = 14/104 (13%)
Frame = +2
Query: 814 LTIHHHPLLPLKIGNIFLPLPLIF--LILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSL 871
L +H HPLL L + L +F + ++++F LL HH H+PLLH L+ L
Sbjct: 80 LYLHLHPLLQL----LLLQEVQLFQKFLNQLVMFPFLVLLHHHHHNPLLHLYPQPHLLRL 247
Query: 872 YLLELPS--EIKL----------HLHIYMTTFAMHLFLLLITVS 903
LL+ ++KL + H+ + + A+ +LLL+ S
Sbjct: 248 PLLQEVQLCQVKLLFLVLFHHHHNHHLLLQSMALQPYLLLLLYS 379
Score = 31.6 bits (70), Expect = 0.89
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Frame = +2
Query: 287 IPMQINLMLLQMLLLMKAFLILRKMVKDLPLSLKLVLL--KSNMVILLLYFSNHLWFLKH 344
+ + ++L L LLL++ + +K + L + LVLL + +L LY HL L
Sbjct: 74 LKLYLHLHPLLQLLLLQEVQLFQKFLNQLVMFPFLVLLHHHHHNPLLHLYPQPHLLRLPL 253
Query: 345 LPQILLAPI--ILLLLFHPFPQVSILL---SLVLYILKIIIGLLIQVLMSIFAP 393
L ++ L + + L+LFH +LL +L Y+L ++ L Q+ + P
Sbjct: 254 LQEVQLCQVKLLFLVLFHHHHNHHLLLQSMALQPYLLLLLYSCLQQIELHSLLP 415
Score = 28.1 bits (61), Expect = 9.9
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 858 PLLHNLHHYLLMSLYLLELPSEIKLHLHIY-----MTTFAMHLFLLLITVSVNIPFPILF 912
PLL L L SL L + +KL+LH++ + + LF + V PF +L
Sbjct: 8 PLLQCLQQIELHSLLPQHLQNHLKLYLHLHPLLQLLLLQEVQLFQKFLNQLVMFPFLVLL 187
Query: 913 H 913
H
Sbjct: 188 H 190
>TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (60%)
Length = 913
Score = 36.6 bits (83), Expect = 0.028
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 7/32 (21%)
Frame = +1
Query: 843 LIFH-----NHHLLSHHLHSP--LLHNLHHYL 867
L+FH +HHLL HHLH P LLH+LH +L
Sbjct: 796 LMFHYPQLYHHHLLLHHLHQPHRLLHHLHQHL 891
>TC7818 UP|Q94AY7 (Q94AY7) AT4g38510/F20M13_70, partial (87%)
Length = 1481
Score = 35.0 bits (79), Expect = 0.081
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Frame = +1
Query: 842 ILIFHNHHLLSHHLHSPLLHNLHHYL-----------LMSLYLLELPSEIKLHLHIYMTT 890
+L+ L S L SP++ +LH Y+ L++ +E + + L L ++ T
Sbjct: 31 LLLEVKRSLYSQQLVSPIMKSLHKYVVRLA*SSD*RSLITFLRVEKMTILPLCLRLWELT 210
Query: 891 FAMHLF----LLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLILN 933
+ H F L + PF +++ M++ L+ +L LL LLLL+LN
Sbjct: 211 WRQHSFSNVTLRKMVQWRE*PFSLIWQMILQLS-VLSLLVLLLLLLN 348
>TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (16%)
Length = 624
Score = 35.0 bits (79), Expect = 0.081
Identities = 22/48 (45%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Frame = +1
Query: 834 PLIFLILRILIFHNHHL-LSHHLHSPLLHNLHHYLLMSL---YLLELP 877
P + L L +L H+HH L HH H PLLH+ H LL+ L ELP
Sbjct: 178 PPLLLHLPLLHLHHHHPPLLHHHHPPLLHHHHPPLLLRTPPPVLSELP 321
>AV427333
Length = 387
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 814 LTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNL---------H 864
LT+H HP P+ PL + L+ + H+HH HH L+H+L H
Sbjct: 133 LTLHQHP--PITSNLHHPPLTHLLLLHEDTLHHHHH---HHHRRRLIHSLLHHHTCAPRH 297
Query: 865 HYLLMSLYL 873
H++ +SL L
Sbjct: 298 HHITLSLLL 324
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/41 (46%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = +1
Query: 848 HHL---LSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLH 885
HHL L+ H H P+ NLHH L L LL E LH H
Sbjct: 115 HHLPTPLTLHQHPPITSNLHHPPLTHLLLLH---EDTLHHH 228
>TC14145 similar to UP|Q7XXS4 (Q7XXS4) Thiamine biosynthetic enzyme, partial
(83%)
Length = 1372
Score = 34.7 bits (78), Expect = 0.11
Identities = 26/62 (41%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = +1
Query: 817 HHHP-LLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLE 875
HH+P LLP F P LI L+ H HHL H +H P HN H L++LE
Sbjct: 133 HHNPHLLPH-----FQPKILILLLPWKTHLHPHHL--HQIHHPTKHNHH------LHVLE 273
Query: 876 LP 877
LP
Sbjct: 274 LP 279
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 33.9 bits (76), Expect = 0.18
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 837 FLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELP 877
F+ L+ H+HH HH H + HH +LM L L LP
Sbjct: 233 FIHLQWRHHHHHHQHQHHPHHHHIGQHHHLVLMDLLFLHLP 355
>TC8854 weakly similar to UP|Q9LEU4 (Q9LEU4) CCR4-associated factor-like
protein, partial (8%)
Length = 916
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 888 MTTFAMH-LFLLLITVSVNIPFP--ILFHML---VYLTLILFLLCLLLLILNQNPMMRQ 940
MT F + L LL+ VSV+IP P +FH+L + L LFLL + L L +PM Q
Sbjct: 106 MTLFWTYSLTLLMAFVSVSIPLPQLFIFHVLKSEPCIRLFLFLLTMCLFFL*MSPMFHQ 282
>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
Length = 1294
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/48 (45%), Positives = 27/48 (55%)
Frame = -2
Query: 332 LLYFSNHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKII 379
LL NHL HL LL PI LLL H P+ SILL L ++ + +I
Sbjct: 609 LLPSLNHLGDPPHLNHPLLKPISHLLLLHTRPEPSILLRLRVHHVDVI 466
>BP056337
Length = 550
Score = 33.5 bits (75), Expect = 0.24
Identities = 30/79 (37%), Positives = 42/79 (52%), Gaps = 6/79 (7%)
Frame = +2
Query: 821 LLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNL-----HHYLLMSLYLLE 875
LL ++I N LP+ LI R +HHL S L + LLH+L HH LL +L+LL
Sbjct: 320 LLGIQINNNKLPI----LISRSFSRQHHHLQSLIL*TLLLHSLLLLLPHHLLLHTLHLLL 487
Query: 876 LP-SEIKLHLHIYMTTFAM 893
L + L I++T F +
Sbjct: 488 LTLHPLAQTLIIFLTIFLL 544
>BP037950
Length = 529
Score = 33.5 bits (75), Expect = 0.24
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Frame = -2
Query: 844 IFHNHHLLSHHLHSPLLHNLHHYLLMSLYLL-ELPSEIKLHLHIYMTTFAMHLFLLLITV 902
I N L+ HHL LL +L H LL+ +L EL + + H + F +HLFL V
Sbjct: 486 ITSNSLLMCHHLK--LLVHLIHLLLLPCFLF*EL---LFISSHHVLNDFPVHLFLPTHHV 322
Query: 903 SVN---------------IPFPILFH-MLVYLTLILFLLCLLLLIL 932
N +P P+L +L+ LTL + L CL+ I+
Sbjct: 321 VHNTLTKPLEHLKPIINPLPLPLLHDFLLILLTLSIVLFCLINRII 184
Score = 29.6 bits (65), Expect = 3.4
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Frame = -2
Query: 814 LTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSH---HLHSP---LLHN----- 862
L HH LL I + LP FL +L +HH+L+ HL P ++HN
Sbjct: 468 LMCHHLKLLVHLIHLLLLPC---FLF*ELLFISSHHVLNDFPVHLFLPTHHVVHNTLTKP 298
Query: 863 ---------------LHHYLL----MSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVS 903
LH +LL +S+ L L + I + + I +HL LLL+ +
Sbjct: 297 LEHLKPIINPLPLPLLHDFLLILLTLSIVLFCLINRIIMMILIIQCCTLLHLVLLLLLLL 118
Query: 904 VNIPFPILFHMLVYLTLILFLLCLLLLILNQNPMMRQSNM 943
++ + YL + LF L +I+N + ++ N+
Sbjct: 117 MSSTL-----LSPYLLIKLFKLSEKPIIINISTLVGVINV 13
>TC11001 homologue to UP|Q9LYF9 (Q9LYF9) Clathrin binding protein-like,
partial (5%)
Length = 652
Score = 33.1 bits (74), Expect = 0.31
Identities = 43/166 (25%), Positives = 79/166 (46%), Gaps = 5/166 (3%)
Frame = +1
Query: 231 FLVKNLVYL*--MHQMLECPMAVVNLLRDHLNLRTIQDIALFAIGIITQWIFVTRCMVIP 288
FL+K VYL* + +L + + LR HL + I+ I+L I ++T W+ P
Sbjct: 136 FLLKVQVYL*TVLRMILTILIREEHQLRLHLEAQ-IRLISLGKI*LVTSWM--------P 288
Query: 289 MQINLMLLQMLLLMKAFLILRK---MVKDLPLSLKLVLLKSNMVILLLYFSNHLWFLKHL 345
+ L +Q L++ + + L+ + L + +LVL N I +YF + L FL+
Sbjct: 289 QHLFL*KIQQLVMCQRSISLQMHHLYQRSLMRTKELVL---NHRIKWIYFLHSLPFLQLH 459
Query: 346 PQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIF 391
PQ+ P + L Q ++ L ++ + ++ LL ++ +F
Sbjct: 460 PQLTCFPFLNQLCSLTTSQKTMFL*IIALSIPSLLFLLTHLMDQMF 597
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 33.1 bits (74), Expect = 0.31
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 829 IFLPLPLIFLILRILIFHNHHLLSHHL-HSPLLHNLH 864
I+LPLPLI+ FH+HH L L HSP H LH
Sbjct: 113 IYLPLPLIY-------FHHHHFLYVALQHSPETHLLH 24
>BP046094
Length = 547
Score = 32.7 bits (73), Expect = 0.40
Identities = 21/56 (37%), Positives = 31/56 (54%)
Frame = +3
Query: 336 SNHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIF 391
S+HL L H P + LAP+I+ L V SL+ +I I+I + +L+SIF
Sbjct: 330 SSHLILLPHNPFLPLAPLIIFLFLSGSMPVGDTHSLIFFIFIIVI-IRATLLISIF 494
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.357 0.162 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,856,344
Number of Sequences: 28460
Number of extensions: 471455
Number of successful extensions: 10003
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 7022
Number of HSP's successfully gapped in prelim test: 363
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 8520
length of query: 1390
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1288
effective length of database: 1,994,680
effective search space: 2569147840
effective search space used: 2569147840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146854.1