BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.12 + phase: 2 /pseudo
(127 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12002 similar to UP|SP41_HUMAN (Q16550) Transcription initiati... 28 0.62
BI418438 27 0.81
AV409241 27 1.1
TC19874 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyl... 27 1.1
AV781255 27 1.4
AW720501 27 1.4
BP054244 25 3.1
AV408533 25 4.0
AV768577 25 4.0
TC17279 25 5.2
AV780444 25 5.2
TC12685 weakly similar to UP|Q7QA92 (Q7QA92) AgCP13961 (Fragment... 25 5.2
TC17167 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived f... 24 6.8
AW720113 24 6.8
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 24 6.8
BP069160 24 6.8
TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-ac... 24 6.8
TC16039 similar to UP|AAS53383 (AAS53383) AFR012Cp, partial (6%) 24 6.8
BP043927 24 8.9
BI418990 24 8.9
>TC12002 similar to UP|SP41_HUMAN (Q16550) Transcription initiation protein
SPT4 homolog 1, partial (21%)
Length = 686
Score = 27.7 bits (60), Expect = 0.62
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 50 YRTLPKVTLFVGYMICSQIRSLLRFC 75
YR V+LF+GY + ++ LLRFC
Sbjct: 585 YRHHKLVSLFMGYRLFKRLFGLLRFC 662
>BI418438
Length = 431
Score = 27.3 bits (59), Expect = 0.81
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 6 GGKGVVVGNGVGGC-GCGRR 24
GG+G GNG GGC GCGRR
Sbjct: 258 GGRGW--GNGGGGCCGCGRR 205
>AV409241
Length = 282
Score = 26.9 bits (58), Expect = 1.1
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = -1
Query: 5 VGGKGVVVGNGVGGCGC 21
VGG GV+VG GGC C
Sbjct: 117 VGGGGVLVGECEGGCTC 67
>TC19874 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (11%)
Length = 533
Score = 26.9 bits (58), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Frame = +2
Query: 32 YYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLL---RFCR 76
+YF++F L F G+R L K+ +F+ + +CS L+ R C+
Sbjct: 179 FYFIIFFSYKL---FYMGFRILMKMHIFLVFQLCSSYLHLVLDRRICK 313
>AV781255
Length = 483
Score = 26.6 bits (57), Expect = 1.4
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Frame = -1
Query: 32 YYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLL---RFCR 76
+YF++F L F G+R L K+ +F+ + +CS L+ R C+
Sbjct: 237 FYFIIFFSYKL---FYMGFRILMKMHIFLVFKLCSSYLHLVLDRRICK 103
>AW720501
Length = 188
Score = 26.6 bits (57), Expect = 1.4
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +2
Query: 12 VGNGVGGCGCGRRNF*RSVGYYFLMFLCSLL 42
V N + C C R F V ++FL LC +L
Sbjct: 53 VHNLIVNCSCNSRQFRD*VDFFFLSILCVIL 145
>BP054244
Length = 465
Score = 25.4 bits (54), Expect = 3.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 15 GVGGCGCGRRNF 26
G GGCGCG NF
Sbjct: 131 GGGGCGCGFNNF 96
>AV408533
Length = 416
Score = 25.0 bits (53), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 41 LLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLRF 74
L+ +++GSG+ TLP L + + LLRF
Sbjct: 197 LVSVVYGSGFYTLPFSLLLPSLTVLLHLIHLLRF 298
>AV768577
Length = 497
Score = 25.0 bits (53), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Frame = +1
Query: 54 PKVTLFVGYMICSQIRSLLR--FCRMLI*FGINRFL*RC 90
P T FV ++ SQ+ LL FC L+ FG+ * C
Sbjct: 298 PVWTFFVPSLLVSQVWFLLGALFCTCLVWFGLGALF*PC 414
>TC17279
Length = 508
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 30 VGYYFLMFLCSLLRLMFGSGYRTLPKV 56
+G+YF FLC LL F + T ++
Sbjct: 422 IGFYFQFFLCPLLGNCFHTSRNTYARM 502
>AV780444
Length = 515
Score = 24.6 bits (52), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 29 SVGYYFLMFLCSLLRLMFGSGYRTLP 54
S+ +YF++ LCSL F + YR P
Sbjct: 37 SLSFYFVLLLCSLFS-PFSNSYRLNP 111
>TC12685 weakly similar to UP|Q7QA92 (Q7QA92) AgCP13961 (Fragment), partial
(9%)
Length = 547
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -3
Query: 1 CSFLVGGKGVVVGNGVGGCGCGRRNF*RSVG 31
CS G G +V +G CG G+R F S G
Sbjct: 164 CSEWWVGDGGMVQLDLGACGDGKRGFDSSTG 72
>TC17167 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived factor
2-like protein precursor (SDF2-like protein), partial
(47%)
Length = 588
Score = 24.3 bits (51), Expect = 6.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 101 ACLPNQI*GRGELLTRRL 118
AC+PN RGELL RR+
Sbjct: 18 ACIPNIRQSRGELLWRRV 71
>AW720113
Length = 512
Score = 24.3 bits (51), Expect = 6.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 13 GNGVGGCGCG 22
G G GGCGCG
Sbjct: 170 GGGGGGCGCG 141
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 24.3 bits (51), Expect = 6.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 15 GVGGCGCGRRNF*RSVGYYFLMFL 38
GVGGCGC RR + S G+ L+ L
Sbjct: 672 GVGGCGC-RRGW--SGGFILLLLL 734
>BP069160
Length = 452
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = -1
Query: 28 RSVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMI 64
R++ F + S L +FGSGY L +TL + + +
Sbjct: 269 RTLTLAFAWRVISFLFFLFGSGYALLLYITLLLYFYV 159
>TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
glucosamine transferase {Arabidopsis thaliana;} ,
partial (16%)
Length = 833
Score = 24.3 bits (51), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = -2
Query: 14 NGVGGCGCG--RRNF*RSVGYYFLMFLCSLLRLMFGSG 49
NG+G GCG RR+ +S YY ++ +F G
Sbjct: 115 NGIGSGGCGG*RRSLEKSKPYYCVVISRVFFFFVFSRG 2
>TC16039 similar to UP|AAS53383 (AAS53383) AFR012Cp, partial (6%)
Length = 597
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = +2
Query: 6 GGKGVVVGNGVGGCGCGRRNF*RSVGYYFLMFLCSLLRL 44
G K ++V + + GC + +S YFLM +L L
Sbjct: 284 GSKAILVPSQISSSGCQSKLTEKSCDIYFLMLSLALSSL 400
>BP043927
Length = 513
Score = 23.9 bits (50), Expect = 8.9
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 3 FLVGGKGVVVGNGVGG 18
F+VGG+GVVV VGG
Sbjct: 165 FVVGGEGVVVVFEVGG 118
>BI418990
Length = 454
Score = 23.9 bits (50), Expect = 8.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 17 GGCGCGRRNF*RSVG 31
GGCGC R+ F* G
Sbjct: 168 GGCGCDRKRF*VGKG 124
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.358 0.167 0.583
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,505,513
Number of Sequences: 28460
Number of extensions: 39028
Number of successful extensions: 562
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of query: 127
length of database: 4,897,600
effective HSP length: 80
effective length of query: 47
effective length of database: 2,620,800
effective search space: 123177600
effective search space used: 123177600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 50 (23.9 bits)
Medicago: description of AC146752.12