BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146589.2 + phase: 0
(277 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive elemen... 108 8e-25
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 104 1e-23
AI967551 99 6e-22
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 99 1e-21
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 98 1e-21
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 98 2e-21
TC17158 homologue to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elem... 90 5e-19
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 89 6e-19
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 89 1e-18
TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene respon... 88 1e-18
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 86 7e-18
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 82 8e-17
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 82 1e-16
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 81 2e-16
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 80 4e-16
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 80 5e-16
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 79 6e-16
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 77 3e-15
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 76 7e-15
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 75 2e-14
>TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive element binding
protein, partial (36%)
Length = 497
Score = 108 bits (271), Expect = 8e-25
Identities = 51/65 (78%), Positives = 58/65 (88%)
Frame = +3
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDV 191
RGVRRRPWGKFAAEIRDSTR G RVWLGTF++ E AALAYDQAAF+ +GS A+LNFP DV
Sbjct: 300 RGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPVDV 479
Query: 192 VKDSL 196
V++SL
Sbjct: 480 VRESL 494
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 104 bits (260), Expect = 1e-23
Identities = 53/90 (58%), Positives = 65/90 (71%)
Frame = +3
Query: 102 SKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTF 161
SK+ ++SS +SS +E N + RGVRRRPWGKFAAEIRD RKG+RVWLGTF
Sbjct: 303 SKETSFSHQSSSSSSSSDHQTQEEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTF 482
Query: 162 NTEEEAALAYDQAAFSAKGSLAVLNFPEDV 191
+T EAA AYD+AAF +GS A+LNFP +V
Sbjct: 483 DTAIEAAKAYDRAAFKMRGSRAILNFPLEV 572
>AI967551
Length = 466
Score = 99.4 bits (246), Expect = 6e-22
Identities = 50/82 (60%), Positives = 61/82 (73%)
Frame = +2
Query: 107 NKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEE 166
+ ++ + + S + + E NK RGVRRRPWGKFAAEIRDSTR G RVWLGTF++ E
Sbjct: 215 SSQQQAPIGSKVNEASSMEKNK-AYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA 391
Query: 167 AALAYDQAAFSAKGSLAVLNFP 188
AALAYDQAAF+ +GS A LNFP
Sbjct: 392 AALAYDQAAFAMRGSSATLNFP 457
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 98.6 bits (244), Expect = 1e-21
Identities = 63/149 (42%), Positives = 82/149 (54%), Gaps = 10/149 (6%)
Frame = +3
Query: 77 LEVSYNNTTIYTQV-----IKETETSLSLPSKKNKN-----KKKTSSLASSLPLPAIKES 126
LE NN T Y+ I++ ++S N + KK +S+ A S P +
Sbjct: 114 LEHDSNNETCYSPSDNPFPIQDFDSSDGSSQDTNNSSPSGCKKGSSAEARSSHAPPAEWK 293
Query: 127 NKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLN 186
RGVRRRPWGKFAAEIRD + GARVWLGT+ TEEEA LAYD+AAF +G A LN
Sbjct: 294 R---FRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKIRGRKAKLN 464
Query: 187 FPEDVVKDSLKEMAINSEPLEEGTSPVLA 215
FP + D+ E A E ++ + L+
Sbjct: 465 FPHLIGSDTQPETASVVEAFKQNSPEPLS 551
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/112 (50%), Positives = 69/112 (61%), Gaps = 7/112 (6%)
Frame = +1
Query: 93 ETETSLSLPSKKNKNKKKTSSLA-SSLPLPAIKESNK------RVLRGVRRRPWGKFAAE 145
+TE ++S +K + + SS P P + + R RGVRRRPWGKFAAE
Sbjct: 49 DTEVAMSHEAKNSITPTHSGETQKSSSPEPEVSGKQEQTCYQGRRYRGVRRRPWGKFAAE 228
Query: 146 IRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKDSLK 197
IRD TRKG RVWLGTF+TE +AA AYD AAF +G A+LNFP + K S K
Sbjct: 229 IRDPTRKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFPLEAGKASPK 384
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 97.8 bits (242), Expect = 2e-21
Identities = 55/114 (48%), Positives = 69/114 (60%)
Frame = +2
Query: 119 PLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSA 178
P PA K K+ RGVR+RPWGKFAAEIRD ++G+RVWLGTF+T EAA AYD+AAF
Sbjct: 524 PEPAEK---KQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKL 694
Query: 179 KGSLAVLNFPEDVVKDSLKEMAINSEPLEEGTSPVLAIKRKIKREHIARKSSNE 232
+GS A+LNFP DV + S+ V+ +K +KRE E
Sbjct: 695 RGSKAILNFPLDVAAAAASGDG-ESDRKRRREEEVVEVKAVVKREKTTESEVKE 853
>TC17158 homologue to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (35%)
Length = 554
Score = 89.7 bits (221), Expect = 5e-19
Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Frame = +2
Query: 101 PSKKNKNKKKTSSLASSLPLPAIKESNK----RVLRGVRRRPWGKFAAEIRDSTRKGARV 156
P KK+ KK SS A+ +ESN + RGVRRRPWGKFA EIRD + GARV
Sbjct: 281 PVKKSPGCKKGSSAAA-------RESNAPPVWKRYRGVRRRPWGKFAGEIRDPKKNGARV 439
Query: 157 WLGTFNTEEEAALAYDQAAFSAKG 180
WLGT+ TEEEAALAYD+AAF +G
Sbjct: 440 WLGTYETEEEAALAYDKAAFKMRG 511
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 89.4 bits (220), Expect = 6e-19
Identities = 51/111 (45%), Positives = 68/111 (60%)
Frame = +3
Query: 81 YNNTTIYTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWG 140
+N+ + + T T+ P K + +T ++ ++ KR RGVR+RPWG
Sbjct: 75 FNSVAERSSNLTNTATTKISPMVKPVYEYRTENVREET-----EQQPKRKYRGVRQRPWG 239
Query: 141 KFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDV 191
K+AAEIRD K ARVWLGTFNT EEAA AYDQA+ +G+ A LNFPE+V
Sbjct: 240 KWAAEIRDPF-KAARVWLGTFNTAEEAARAYDQASLRFRGNKAKLNFPENV 389
Score = 28.5 bits (62), Expect = 1.3
Identities = 23/93 (24%), Positives = 42/93 (44%), Gaps = 15/93 (16%)
Frame = +3
Query: 41 INFKKDSQSQTKESLLLPLSLYAESNSSFPLL--------------SNGSLEVSYNNTTI 86
+NF ++ + + S+ P + ++ SNSS P++ SN S Y+ ++
Sbjct: 369 LNFPENVRLLQQPSINQPTTHFSNSNSSEPIVHAEAQHHTFQGSSGSNSSNFYDYSPMSL 548
Query: 87 YTQV-IKETETSLSLPSKKNKNKKKTSSLASSL 118
Y Q + T S L S + + +S ASS+
Sbjct: 549 YDQANVSSTMASHHLQSSSSSSSSYSSMFASSV 647
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 88.6 bits (218), Expect = 1e-18
Identities = 53/127 (41%), Positives = 73/127 (56%), Gaps = 2/127 (1%)
Frame = +3
Query: 87 YTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEI 146
+ VI+ + ++ KK + KK + K + K V RG+R+RPWGK+AAEI
Sbjct: 282 FDDVIQVPDQKVAGCDKKGEKKKSVVGSGGA----GKKNARKNVYRGIRQRPWGKWAAEI 449
Query: 147 RDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVV--KDSLKEMAINSE 204
RD +KG RVWLGTF T EEAA AYD+AA +G A LNFP+ V + K+ ++ E
Sbjct: 450 RDP-QKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLSPE 626
Query: 205 PLEEGTS 211
E +S
Sbjct: 627 QPEYSSS 647
>TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
element binding factor 5 (ATERF5) {Arabidopsis
thaliana;} , partial (22%)
Length = 785
Score = 88.2 bits (217), Expect = 1e-18
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +1
Query: 125 ESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAV 184
E K+ RGVR+RPWGKFAAEIRD ++G+R+WLGTF+T EAA YD+AAF+ +G AV
Sbjct: 589 EVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFDTAIEAAKVYDRAAFTFRGLEAV 768
Query: 185 LNFP 188
LNFP
Sbjct: 769 LNFP 780
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 85.9 bits (211), Expect = 7e-18
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = +3
Query: 101 PSKKNKNKKKTSSLASSLPLPA---IKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVW 157
P + +++ S+ S P A +K K + RG+R+RPWGK+AAEIRD RKG RVW
Sbjct: 297 PIAHQQQQQQPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVW 473
Query: 158 LGTFNTEEEAALAYDQAAFSAKGSLAVLNFP 188
LGTFNT EEAA AYD+ A +G A +NFP
Sbjct: 474 LGTFNTAEEAARAYDREARKIRGKKAKVNFP 566
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 82.4 bits (202), Expect = 8e-17
Identities = 49/109 (44%), Positives = 64/109 (57%), Gaps = 5/109 (4%)
Frame = +2
Query: 102 SKKNKNKKKTSSLASSLPLPAIKES-----NKRVLRGVRRRPWGKFAAEIRDSTRKGARV 156
+K++ + K S+ A S+ E K RG+R+RPWGK+AAEIRD RKG RV
Sbjct: 422 TKRSNSFSKGSTAAKSVESNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDP-RKGVRV 598
Query: 157 WLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKDSLKEMAINSEP 205
WLGTFNT EEAA AYD A +G+ A +NFP V+ L + + P
Sbjct: 599 WLGTFNTAEEAARAYDAEARRIRGNKAKVNFP---VEPQLSSKRLKANP 736
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 82.0 bits (201), Expect = 1e-16
Identities = 42/66 (63%), Positives = 48/66 (72%)
Frame = +2
Query: 124 KESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLA 183
K K + RG+R+RPWGK+AAEIRD RKG RV LGTFNT EEAA AYD AA +G A
Sbjct: 317 KRVRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVGLGTFNTAEEAAQAYDDAAKRIRGDKA 493
Query: 184 VLNFPE 189
LNFP+
Sbjct: 494 KLNFPD 511
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 80.9 bits (198), Expect = 2e-16
Identities = 46/95 (48%), Positives = 59/95 (61%), Gaps = 8/95 (8%)
Frame = +3
Query: 102 SKKNKNKKKTSSLASSLPLPAIKESNKR--------VLRGVRRRPWGKFAAEIRDSTRKG 153
++ N N +SL+SS P + + KR V RGVR R WGK+ +EIR+ RK
Sbjct: 171 TESNSNSNSYTSLSSSSPPQSNNNNTKRNRESNTHAVYRGVRMRTWGKWVSEIREP-RKK 347
Query: 154 ARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFP 188
+R+WLGTF T E AA A+D AA S KGS A+LNFP
Sbjct: 348 SRIWLGTFCTPEMAARAHDVAALSIKGSAAILNFP 452
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 80.1 bits (196), Expect = 4e-16
Identities = 52/156 (33%), Positives = 83/156 (52%), Gaps = 13/156 (8%)
Frame = +3
Query: 80 SYNNTTIYTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAI--KESNKRV---LRGV 134
+Y ++ I + ++++ +S ++ +N T++ +++ + K SN RGV
Sbjct: 9 TYLHSLIKSIIMRKAPSSTTVTKARNTAAATTAAATTAVSAKSKIHKPSNNATEVHFRGV 188
Query: 135 RRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKD 194
R+RPWG++AAEIRD +K +RVWLGTF+T EEAA AYD AA +G A NFP+ D
Sbjct: 189 RKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPQSPSPD 365
Query: 195 S--------LKEMAINSEPLEEGTSPVLAIKRKIKR 222
+ + + N P + T +R I R
Sbjct: 366 NNTGPNDVVVANVKANQSPSQSSTVESSTPERDITR 473
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 79.7 bits (195), Expect = 5e-16
Identities = 42/75 (56%), Positives = 52/75 (69%)
Frame = +2
Query: 114 LASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQ 173
L S+ + S + RGVR+RPWG++AAEIRD +K RVWLGTF+T EEAALAYD
Sbjct: 134 LLPSMASSSSSASREGHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDG 310
Query: 174 AAFSAKGSLAVLNFP 188
AA S +G+ A NFP
Sbjct: 311 AARSLRGAKAKTNFP 355
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 79.3 bits (194), Expect = 6e-16
Identities = 42/70 (60%), Positives = 50/70 (71%)
Frame = +1
Query: 119 PLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSA 178
P P KE+ RGVR+RPWG+FAAEIRD +K ARVWLGTF++ E+AA AYD AA S
Sbjct: 214 PTPETKETR---FRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEDAARAYDAAARSF 381
Query: 179 KGSLAVLNFP 188
+G A NFP
Sbjct: 382 RGPKAKTNFP 411
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 77.0 bits (188), Expect = 3e-15
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +2
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFP 188
RGVR+RPWG+FAAEIRD +K ARVWLGTF++ EEAA AYD AA + +G A NFP
Sbjct: 437 RGVRKRPWGRFAAEIRDPMKK-ARVWLGTFDSAEEAARAYDAAARALRGPKAKTNFP 604
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 75.9 bits (185), Expect = 7e-15
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = +1
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDV 191
RGVR+RPWG++AAEIRD +K +RVWLGTF+T EEAA AYD AA +G A NFP
Sbjct: 202 RGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFP--F 372
Query: 192 VKDSLKEMAINSEPLEEGTS 211
D++K + + E +S
Sbjct: 373 PSDNVKNQSPSQSSTVESSS 432
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 74.7 bits (182), Expect = 2e-14
Identities = 44/95 (46%), Positives = 61/95 (63%), Gaps = 4/95 (4%)
Frame = +1
Query: 125 ESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAV 184
E+++ RGVR+R WGK+ AEIR+ R G R+WLGTF T AALAYD+AA + GS A
Sbjct: 370 ENSRCNYRGVRQRTWGKWVAEIREPNR-GKRLWLGTFATAIGAALAYDEAARAMYGSSAR 546
Query: 185 LNFPEDVV----KDSLKEMAINSEPLEEGTSPVLA 215
LNFP V ++SLK+ ++ ++ + VLA
Sbjct: 547 LNFPNVAVSHFSEESLKDSSVANDDSGSSMAAVLA 651
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,184,054
Number of Sequences: 28460
Number of extensions: 51201
Number of successful extensions: 340
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of query: 277
length of database: 4,897,600
effective HSP length: 89
effective length of query: 188
effective length of database: 2,364,660
effective search space: 444556080
effective search space used: 444556080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146589.2