TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146330.6 + phase: 0 
         (230 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...   258  8e-70
TC18542 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding prote...   240  2e-64
TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, par...   230  1e-61
TC18973 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...   217  2e-57
TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, pa...   150  7e-38
TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%)           90  4e-19
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote...    74  2e-14
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    70  3e-13
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par...    69  9e-13
TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding pr...    67  3e-12
TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribos...    66  6e-12
TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotei...    65  1e-11
TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprote...    64  2e-11
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot...    63  5e-11
TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding p...    60  3e-10
TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    60  4e-10
TC16529 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    57  6e-10
TC11829 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, p...    58  1e-09
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    55  1e-08
TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...    53  4e-08

>TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (77%)
          Length = 1576

 Score =  258 bits (658), Expect = 8e-70
 Identities = 128/196 (65%), Positives = 150/196 (76%), Gaps = 2/196 (1%)
 Frame = +3

Query: 7   QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
           QP++ +EVRTLWIGDLQYW+DENYL  CF+HTGE+ ++K+IRNK T Q EGYGF+EF S 
Sbjct: 309 QPSTPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSR 488

Query: 67  SAAERVLQTYNGTQMPGTEQTFRLNWASFGI-GERRPDAGPDHSIFVGDLAPDVTDYLLQ 125
           + AER+LQTYNGT MP   Q FRLNWA+F   GERR D  PD++IFVGDLA DVTDY L 
Sbjct: 489 AGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLT 668

Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
           E FRT Y SV+GAKVV D  T R+KGYGFV+F+DESE+ RAM+EM GV CSTRPMRI  A
Sbjct: 669 EVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPA 848

Query: 186 TPKKT-TGYQQNPYAA 200
             K   TG    P A+
Sbjct: 849 ANKNLGTGTGTQPKAS 896



 Score = 62.4 bits (150), Expect = 6e-11
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
 Frame = +3

Query: 16  TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHS------- 67
           T+++GDL   V + +LT  F +    V   K++ +++T + +GYGF+ F   S       
Sbjct: 618 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 797

Query: 68  ----------------AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIF 111
                           AA + L T  GTQ   + Q  +        G +  +   + +IF
Sbjct: 798 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQ--------GPQNENDPNNTTIF 953

Query: 112 VGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMN 171
           VG+L P+VTD  L++ F   YG +   K+       + K  GFV+F+D S    A+  +N
Sbjct: 954 VGNLDPNVTDDHLRQVFGL-YGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLN 1112

Query: 172 GVYCSTRPMRISAATPKKTTGYQQNP 197
           G     + +R+S          Q +P
Sbjct: 1113GTLLGGQNVRLSWGRSPSNKQTQSDP 1190


>TC18542 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding protein, partial
           (29%)
          Length = 568

 Score =  240 bits (612), Expect = 2e-64
 Identities = 122/157 (77%), Positives = 132/157 (83%)
 Frame = +2

Query: 52  TGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIF 111
           + + EGYGF+EFVSH+AAERVL TYNGT MPGTEQ FRL WAS G G    DAGPDHSIF
Sbjct: 5   SARAEGYGFVEFVSHAAAERVLHTYNGTLMPGTEQPFRLIWASSGGGG---DAGPDHSIF 175

Query: 112 VGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMN 171
           VGDLAPDVTD+LLQETFRTHY SVRGAKVVTDP TGRSKGYGFVKFSDE++RNRAM+EMN
Sbjct: 176 VGDLAPDVTDFLLQETFRTHYPSVRGAKVVTDPVTGRSKGYGFVKFSDEAQRNRAMTEMN 355

Query: 172 GVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVP 208
           GVYCS+RPMRISAATPKKT  +QQ  YA   A    P
Sbjct: 356 GVYCSSRPMRISAATPKKTPSFQQQ-YAPTKAMYQYP 463



 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 16  TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
           ++++GDL   V +  L   F +H   V   K++ + +TG+ +GYGF++F   +   R + 
Sbjct: 167 SIFVGDLAPDVTDFLLQETFRTHYPSVRGAKVVTDPVTGRSKGYGFVKFSDEAQRNRAMT 346

Query: 75  TYNG 78
             NG
Sbjct: 347 EMNG 358



 Score = 28.9 bits (63), Expect = 0.78
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 145 NTGRSKGYGFVKFSDESERNRAMSEMNG 172
           N+ R++GYGFV+F   +   R +   NG
Sbjct: 2   NSARAEGYGFVEFVSHAAAERVLHTYNG 85


>TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (38%)
          Length = 735

 Score =  230 bits (587), Expect = 1e-61
 Identities = 110/158 (69%), Positives = 127/158 (79%)
 Frame = +1

Query: 3   TTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIE 62
           T   QPA+ EEVRTLWIGDLQYW+DENYL  CF+HTGEV ++K+IRNK T Q EGYGFIE
Sbjct: 262 TPQQQPATAEEVRTLWIGDLQYWMDENYLYTCFAHTGEVTTVKVIRNKQTSQSEGYGFIE 441

Query: 63  FVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDY 122
           F S +AAERVLQT+NG  MP   Q FRLNWAS   GE+R D  PD++IFVGDLA DVTDY
Sbjct: 442 FNSRAAAERVLQTFNGAIMPNGGQNFRLNWASLSAGEKRHDDTPDYTIFVGDLAADVTDY 621

Query: 123 LLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDE 160
           LLQETFR  Y SV+GAKVV D  +GR+KGYGFV+F+D+
Sbjct: 622 LLQETFRARYNSVKGAKVVIDRLSGRTKGYGFVRFADD 735



 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +1

Query: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
           ++++GDL   + +  L   F  H G V   KV+ +  T +S+GYGF++F+  +   R + 
Sbjct: 301 TLWIGDLQYWMDENYLYTCF-AHTGEVTTVKVIRNKQTSQSEGYGFIEFNSRAAAERVLQ 477

Query: 169 EMNG 172
             NG
Sbjct: 478 TFNG 489


>TC18973 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (22%)
          Length = 416

 Score =  217 bits (552), Expect = 2e-57
 Identities = 97/108 (89%), Positives = 107/108 (98%)
 Frame = +1

Query: 5   YHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFV 64
           +HQP+S+EEVRTLWIGDLQYWVDENYLTHCF+HTGEV+SIKIIRNK+TGQPEGYGFIEFV
Sbjct: 91  HHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKLTGQPEGYGFIEFV 270

Query: 65  SHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFV 112
           SH+AAERVLQ++NGTQMPGTEQTFRLNWASFGIGERRPD GP+HSIFV
Sbjct: 271 SHAAAERVLQSFNGTQMPGTEQTFRLNWASFGIGERRPDLGPEHSIFV 414



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 34/64 (52%)
 Frame = +1

Query: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
           ++++GDL   V +  L   F  H G V   K++ +  TG+ +GYGF++F   +   R + 
Sbjct: 124 TLWIGDLQYWVDENYLTHCF-AHTGEVVSIKIIRNKLTGQPEGYGFIEFVSHAAAERVLQ 300

Query: 169 EMNG 172
             NG
Sbjct: 301 SFNG 312


>TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, partial (32%)
          Length = 803

 Score =  150 bits (378), Expect(2) = 7e-38
 Identities = 67/105 (63%), Positives = 84/105 (79%), Gaps = 1/105 (0%)
 Frame = +3

Query: 12  EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
           +E+RT+W+GDL +W+DENY+ +CF+HTGEV+S K+IRNK TGQ EGYGF+EF S + AE+
Sbjct: 435 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 614

Query: 72  VLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG-PDHSIFVGDL 115
           VLQ +NGT MP T+Q FRLNWASF  GERR +A   D SIF G L
Sbjct: 615 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFCGGL 749



 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 36/64 (55%)
 Frame = +3

Query: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
           +I++GDL   + +  +   F  H G V  AKV+ +  TG+S+GYGFV+F   +   + + 
Sbjct: 447 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 623

Query: 169 EMNG 172
             NG
Sbjct: 624 NFNG 635



 Score = 23.1 bits (48), Expect(2) = 7e-38
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 118 DVTDYLLQETFRTHY 132
           DVTD +LQETF + +
Sbjct: 758 DVTDAMLQETFGSRF 802


>TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%)
          Length = 721

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 54/156 (34%), Positives = 86/156 (54%)
 Frame = +2

Query: 15  RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
           R++++G++   V E  L   F+ TG V   K+ R     +   YGFI +    +A   + 
Sbjct: 281 RSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAIL 448

Query: 75  TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
           T NG  + G  Q  ++NWA +  G+R   +G  ++IFVGDL+P+VTD  L   F   Y S
Sbjct: 449 TLNGRHLFG--QPIKVNWA-YASGQREDTSG-HYNIFVGDLSPEVTDATLFACFSV-YPS 613

Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEM 170
              A+V+ D  TGRS+G+GFV F  + +   A++++
Sbjct: 614 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 721



 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 24/83 (28%), Positives = 40/83 (47%)
 Frame = +2

Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
           D     S++VG++   VT+ LLQE F    G V G K+           YGF+ + D   
Sbjct: 266 DPSTCRSVYVGNIHTQVTELLLQEVF-AGTGPVEGCKLFRK----EKSSYGFIHYFDRRS 430

Query: 163 RNRAMSEMNGVYCSTRPMRISAA 185
              A+  +NG +   +P++++ A
Sbjct: 431 AALAILTLNGRHLFGQPIKVNWA 499


>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
           chloroplast precursor (CP29A), partial (63%)
          Length = 1602

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 58/211 (27%), Positives = 91/211 (42%), Gaps = 39/211 (18%)
 Frame = +3

Query: 17  LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
           +++G+L + VD   L   F   G V  +++I +K+TG   G+ F+   S + AE   Q +
Sbjct: 351 VFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEAAAQQF 530

Query: 77  NGTQMPGT-------------------EQTFRLNWASFGIGERRPDAGPD---------- 107
           N  ++ G                       FR N  + G G      G D          
Sbjct: 531 NNYELEGRALRVNSGPPPKNENRGFNENPRFRNNSFNRG-GSDSYRGGSDGYRGGGSDGY 707

Query: 108 ----------HSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKF 157
                     + + VG+LA  V +  L+  FR   G V  AKV+ D  +GRS+G+GFV F
Sbjct: 708 RGGGSSSYSENRVHVGNLAWGVDNAALESLFREQ-GRVVDAKVIYDRESGRSRGFGFVTF 884

Query: 158 SDESERNRAMSEMNGVYCSTRPMRISAATPK 188
           S   E N A+  ++G   + R +++S A  K
Sbjct: 885 SSPDEVNSAIRSLDGADLNGRAIKVSQADSK 977



 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = +3

Query: 106 PDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNR 165
           PDH +FVG+L   V    L E F+   G+V   +V+ D  TG S+G+ FV  S  +E   
Sbjct: 339 PDHKVFVGNLPFSVDSAQLAELFQ-DAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEA 515

Query: 166 AMSEMNGVYCSTRPMRISAATPKK--TTGYQQNP 197
           A  + N      R +R+++  P K    G+ +NP
Sbjct: 516 AAQQFNNYELEGRALRVNSGPPPKNENRGFNENP 617


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 70.1 bits (170), Expect = 3e-13
 Identities = 47/172 (27%), Positives = 85/172 (49%)
 Frame = +2

Query: 17  LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
           ++I +L   +D   L   FS  G ++S K+  +  +GQ +GYGF++F +  AA+  ++  
Sbjct: 98  IFIKNLDKAIDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFETEEAAQNAIEKL 274

Query: 77  NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVR 136
           NG  +   +Q +   +      E   D    +++FV +L+   TD  L+  F   +G++ 
Sbjct: 275 NG-MLLNDKQVYVGPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVF-GEFGTIT 448

Query: 137 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 188
            A V+ D   G+SK +GFV F +  +  RA+  +NG     +   +  A  K
Sbjct: 449 SAVVMRD-GDGKSKCFGFVNFENADDAARAVESLNGKKVDDKEWYVGKAQKK 601



 Score = 66.6 bits (161), Expect = 3e-12
 Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 14/207 (6%)
 Frame = +2

Query: 17  LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
           +++ +L     ++ L + F   G + S  ++R+   G+ + +GF+ F +   A R +++ 
Sbjct: 371 VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDG-DGKSKCFGFVNFENADDAARAVESL 547

Query: 77  NGTQMPGTE--------QTFRLNWASFGIGERRPDAGPDH---SIFVGDLAPDVTDYLLQ 125
           NG ++   E        ++ R         +   +A   +   +++V +L   + D  L+
Sbjct: 548 NGKKVDDKEWYVGKAQKKSEREQELKNKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 727

Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
           E F + YG++   KV+ DPN G S+G GFV FS   E +RA+ EMNG    ++P+ ++ A
Sbjct: 728 ELFSS-YGTITSCKVMRDPN-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLA 901

Query: 186 TPKKTTGYQ-QNPYAAV--VAAAPVPK 209
             K+    + Q  +A +  VA  P P+
Sbjct: 902 QRKEDRRARLQAQFAQMRPVAMPPAPR 982



 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 28/83 (33%), Positives = 49/83 (58%)
 Frame = +2

Query: 100 RRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSD 159
           R+  AG   +IF+ +L   +    L +TF T +G++   KV TD ++G+SKGYGFV+F  
Sbjct: 77  RKSGAG---NIFIKNLDKAIDHKALHDTFST-FGNILSCKVATD-SSGQSKGYGFVQFET 241

Query: 160 ESERNRAMSEMNGVYCSTRPMRI 182
           E     A+ ++NG+  + + + +
Sbjct: 242 EEAAQNAIEKLNGMLLNDKQVYV 310


>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
          Length = 1779

 Score = 68.6 bits (166), Expect = 9e-13
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
 Frame = +2

Query: 15  RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
           R +++  L +      LT  FS  GE+   K + +K+TG+ +GY FI F       R L+
Sbjct: 608 RKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFILFKHRDGCRRALK 787

Query: 75  TYNGTQMPGTEQTFRLNWASFGIGERRPDAGP-----DHSIFVGDLAPDVTDYLLQETFR 129
             N  +  G   T     ++  +    P+A P        IFV +++ D+    L E F+
Sbjct: 788 --NPQKKIGNRTTSSQLASAGPVPATPPNAPPVSEYTQRKIFVSNVSSDIEPLKLLEFFK 961

Query: 130 THYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVY-CSTRPMRISAATPK 188
             +G V    +  D NTGR KG+    +       +A+ E N  Y   T   + +   PK
Sbjct: 962 -QFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEPNKEYEGHTLYCQKAVDGPK 1138

Query: 189 KTTGYQQNPY 198
            + GY QN +
Sbjct: 1139GSKGYHQNQH 1168



 Score = 28.9 bits (63), Expect = 0.78
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +2

Query: 8   PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
           P S    R +++ ++   ++   L   F   GEV    +  +K TG+P+G+    + S  
Sbjct: 875 PVSEYTQRKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVE 1054

Query: 68  AAERVLQTYN 77
           +A++ L+  N
Sbjct: 1055SAKKALEEPN 1084


>TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding protein
           precursor, partial (30%)
          Length = 655

 Score = 67.0 bits (162), Expect = 3e-12
 Identities = 37/86 (43%), Positives = 53/86 (61%)
 Frame = +2

Query: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
           +H +FVG+L+  VT   L + F   YG+V GA+V+ D  TGRS+GYGFV +S  SE   A
Sbjct: 11  EHKLFVGNLSWTVTSESLIQVF-PEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 187

Query: 167 MSEMNGVYCSTRPMRISAATPKKTTG 192
           +  +N V    R +R+S A  K++ G
Sbjct: 188 LISLNNVELEGRAIRVSLAEGKRS*G 265



 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 35/72 (47%)
 Frame = +2

Query: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
          E    L++G+L + V    L   F   G V+  +++ +  TG+  GYGF+ +   S  E 
Sbjct: 5  ETEHKLFVGNLSWTVTSESLIQVFPEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 184

Query: 72 VLQTYNGTQMPG 83
           L + N  ++ G
Sbjct: 185ALISLNNVELEG 220


>TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribosomal
           protein 2, chloroplast precursor (PSRP-2), partial (68%)
          Length = 1104

 Score = 65.9 bits (159), Expect = 6e-12
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
 Frame = +2

Query: 12  EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
           E  R L++G++   +  + L +       V   +++ +K +G+   + F+   +   A  
Sbjct: 221 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 400

Query: 72  VLQTYNGTQMPGTEQTFR-----LNWASFGIGERRPDAGPD--HSIFVGDLAPDVTDYLL 124
            ++  NGTQ+ G E         L    F + +       D  + ++VG+LA  VT  +L
Sbjct: 401 AIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDML 580

Query: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISA 184
           +  F +  G V  AKV   P T +S G+GFV FS + +   A+S  N      + +R++ 
Sbjct: 581 KNFF-SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 757

Query: 185 A 185
           A
Sbjct: 758 A 760



 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 22/85 (25%), Positives = 43/85 (49%)
 Frame = +2

Query: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
           D  ++VG++   +T+  L    + H  +V  A+V+ D  +GRS+ + FV      + N A
Sbjct: 227 DRRLYVGNIPRTLTNDELANIVQEH-AAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 403

Query: 167 MSEMNGVYCSTRPMRISAATPKKTT 191
           + ++NG     R ++++      TT
Sbjct: 404 IEKLNGTQIGGREIKVNVTEKPLTT 478


>TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotein,
           chloroplast precursor, partial (28%)
          Length = 717

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 56/92 (60%)
 Frame = +3

Query: 94  SFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYG 153
           +FG G    D+G   S++VG+L   V    L+E FR H G+V  A++V D  TGRS+G+G
Sbjct: 42  TFGSGSGSRDSGL--SVYVGNLPWSVDTARLEEIFREH-GNVENARIVMDRETGRSRGFG 212

Query: 154 FVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
           FV  S E++ N A++ ++G     R +R+S A
Sbjct: 213 FVTMSSEADINGAIAALDGQSLDGRTIRVSVA 308


>TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprotein,
           chloroplast precursor (28RNP), partial (34%)
          Length = 637

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 37/90 (41%), Positives = 54/90 (59%), Gaps = 3/90 (3%)
 Frame = +1

Query: 99  ERRP---DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFV 155
           ER P   DA P   ++VG+L  D  +  L++ F  H G V  A+VV D  TGRS+G+GFV
Sbjct: 4   ERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH-GKVVSARVVYDRETGRSRGFGFV 180

Query: 156 KFSDESERNRAMSEMNGVYCSTRPMRISAA 185
             SDE+E N A++ ++G     R +R++ A
Sbjct: 181 TMSDEAELNDAIAALDGQSLGGRTIRVNVA 270


>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
           partial (46%)
          Length = 1150

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 57/226 (25%), Positives = 88/226 (38%), Gaps = 31/226 (13%)
 Frame = +3

Query: 21  DLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQ 80
           DL   V +  L  CFS        +++ +  TG+ +GYGF+ F  H  A+  +    G  
Sbjct: 3   DLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSSINDMTGKW 182

Query: 81  MPGTEQTFRLNWASFGIG------------------------------ERRPDAGPDH-S 109
           + G  Q  R NWA+ G G                              E  P+  P + +
Sbjct: 183 L-GNRQ-IRCNWATKGAGGSSSEEKNSDNQNAVVLTNGSSDGGQDNNNEEAPENNPSYTT 356

Query: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
           ++VG+L  DVT   L   F        GA V+ +    R KG+GFV+++   E   A+  
Sbjct: 357 VYVGNLPHDVTQAELHCQFH-----ALGAGVIEEVRIQRDKGFGFVRYNTHEEAALAIQV 521

Query: 170 MNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKGITKPY 215
            NG     + M+ S         +   P     A+ P+P    +PY
Sbjct: 522 ANGRIVRGKTMKCS---------WGSRPTPPGTASNPLPPPAAQPY 632


>TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
           PsGRBP, partial (88%)
          Length = 683

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 30/79 (37%), Positives = 50/79 (62%)
 Frame = +1

Query: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
           +F+G L+  V D  L++ F + +G+V  A+V+ D +TGRS+G+GFV F  E   + A+S 
Sbjct: 190 LFIGGLSYGVDDKSLEDAFSS-FGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSS 366

Query: 170 MNGVYCSTRPMRISAATPK 188
           M+G   + R +R+S A  +
Sbjct: 367 MDGQDLNGRNIRVSYANDR 423


>TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
           (30%)
          Length = 603

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 39/159 (24%), Positives = 75/159 (46%), Gaps = 11/159 (6%)
 Frame = +2

Query: 42  ISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPG-----------TEQTFRL 90
           I+  ++   + G+ + +GF+ F +   A + +   NG +              +E+   L
Sbjct: 5   ITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGKAKKKSERELEL 184

Query: 91  NWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSK 150
                   +   D     ++++ +L  +V D  L+E F + +G++   K++ DP+ G S+
Sbjct: 185 KEQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELF-SEFGTITSCKIMRDPH-GVSR 358

Query: 151 GYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 189
           G GFV FS   E  RA+ EMNG     +P+ ++ A  K+
Sbjct: 359 GSGFVAFSTPEEATRALGEMNGKMVDGKPLYVALAQKKE 475


>TC16529 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (22%)
          Length = 761

 Score = 57.4 bits (137), Expect(2) = 6e-10
 Identities = 38/135 (28%), Positives = 71/135 (52%)
 Frame = +1

Query: 16  TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
           +L++GDL   V+++ L   F+  G+V+S+++ R+  T +  GYG++ F +   A R L  
Sbjct: 334 SLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPPDAARALDV 513

Query: 76  YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
            N T  P   +  R+ ++      R+       +IF+ +L   +    L +TF + +GS+
Sbjct: 514 LNFT--PLNNRPIRVMYSHRDPSIRKSGTA---NIFIKNLDKAIDHKALHDTF-SSFGSI 675

Query: 136 RGAKVVTDPNTGRSK 150
              K+ TD  +G+SK
Sbjct: 676 LSCKIATDA-SGQSK 717



 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 28/74 (37%), Positives = 41/74 (54%)
 Frame = +1

Query: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
           S++VGDL  +V D  L + F    G V   +V  D  T RS GYG+V FS+  +  RA+ 
Sbjct: 334 SLYVGDLDQNVNDSQLYDLFN-QVGQVVSVRVCRDLTTRRSLGYGYVNFSNPPDAARALD 510

Query: 169 EMNGVYCSTRPMRI 182
            +N    + RP+R+
Sbjct: 511 VLNFTPLNNRPIRV 552



 Score = 21.6 bits (44), Expect(2) = 6e-10
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = +3

Query: 147 GRSKGYGFVKFSDESER 163
           G  +GYGFV+F  E  R
Sbjct: 705 GPVQGYGFVQFDTEHLR 755


>TC11829 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, partial (4%)
          Length = 738

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 35/102 (34%), Positives = 53/102 (51%)
 Frame = +1

Query: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
           D ++++G L P + D  L + F+  +G +  AKV+ D  TG SKGYGFVK++D +  N A
Sbjct: 214 DTNLYIGYLPPTLEDDGLIQLFQ-QFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 390

Query: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVP 208
           +  MNG     R + +  A           P A+ +   PVP
Sbjct: 391 ILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASGMPTYPVP 516



 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 40/67 (58%)
 Frame = +1

Query: 17  LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
           L+IG L   ++++ L   F   GE++  K+I++++TG  +GYGF+++   + A   +   
Sbjct: 223 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 402

Query: 77  NGTQMPG 83
           NG ++ G
Sbjct: 403 NGYRLEG 423


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 45/82 (54%)
 Frame = +1

Query: 104 AGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESER 163
           A  ++  FVG LA     + L++ F + YG +  +KVV D  TGRS+G+GFV F+ E   
Sbjct: 70  ADVEYRCFVGGLAWTTDSHTLEQAFSS-YGEIIDSKVVNDRETGRSRGFGFVTFTSEEAM 246

Query: 164 NRAMSEMNGVYCSTRPMRISAA 185
             A+  MNG     R + ++ A
Sbjct: 247 RSAIEGMNGNELDGRNITVNEA 312



 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 22/70 (31%), Positives = 38/70 (53%)
 Frame = +1

Query: 18  WIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYN 77
           ++G L +  D + L   FS  GE+I  K++ ++ TG+  G+GF+ F S  A    ++  N
Sbjct: 91  FVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMN 270

Query: 78  GTQMPGTEQT 87
           G ++ G   T
Sbjct: 271 GNELDGRNIT 300


>TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (41%)
          Length = 837

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 26/47 (55%), Positives = 32/47 (67%)
 Frame = +2

Query: 154 FVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAA 200
           FV+F+D+SE+ RAM+EM GV CSTRPMRI  A  K     Q  P A+
Sbjct: 2   FVRFADDSEQVRAMTEMQGVLCSTRPMRIGPAATKTPATNQGQPRAS 142



 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 31/92 (33%), Positives = 47/92 (50%)
 Frame = +2

Query: 16  TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
           T+++G+L   V++++L   FS  GE++ +KI   K  G      F++F   S AE  L+ 
Sbjct: 194 TIFVGNLDPNVNDDHLRQVFSPYGELVHVKIPAGKRCG------FVQFADRSGAEEALRV 355

Query: 76  YNGTQMPGTEQTFRLNWASFGIGERRPDAGPD 107
            NGT + G  Q  RL+W   G       A PD
Sbjct: 356 LNGTLLGG--QNVRLSW---GRSPSNKQAQPD 436



 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 3/125 (2%)
 Frame = +2

Query: 79  TQMPGTEQTF-RLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRG 137
           T+ P T Q   R ++ +   G +  +   + +IFVG+L P+V D  L++ F + YG +  
Sbjct: 101 TKTPATNQGQPRASYQNHPQGSQNENDPSNTTIFVGNLDPNVNDDHLRQVF-SPYGELVH 277

Query: 138 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRIS--AATPKKTTGYQQ 195
            K+         K  GFV+F+D S    A+  +NG     + +R+S   +   K      
Sbjct: 278 VKIPA------GKRCGFVQFADRSGAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDS 439

Query: 196 NPYAA 200
           N YAA
Sbjct: 440 NQYAA 454


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,890,302
Number of Sequences: 28460
Number of extensions: 47563
Number of successful extensions: 343
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of query: 230
length of database: 4,897,600
effective HSP length: 87
effective length of query: 143
effective length of database: 2,421,580
effective search space: 346285940
effective search space used: 346285940
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)