BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146329.6 + phase: 0
(486 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP049680 121 3e-28
AI967462 108 2e-24
AV777278 108 3e-24
AV766612 92 2e-19
TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%) 91 3e-19
BU494295 84 5e-17
AV423696 81 4e-16
BP051681 80 1e-15
TC20057 similar to UP|O80872 (O80872) At2g30010 protein (At2g300... 66 3e-15
TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial ... 77 6e-15
BG662185 76 1e-14
CB829368 75 2e-14
TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein (... 74 5e-14
TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial... 72 2e-13
TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabid... 72 3e-13
BP048416 67 7e-12
TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial... 63 9e-11
BP054220 54 4e-08
CB828327 53 1e-07
CB827623 52 2e-07
>BP049680
Length = 474
Score = 121 bits (303), Expect = 3e-28
Identities = 49/93 (52%), Positives = 68/93 (72%)
Frame = +1
Query: 133 CDIYEGSWVLDDSFPLYKSGSCPHIDEPFNCFLNGRRDNKYEKFRWQPKNCNMPRLNGKY 192
C+IYEGSWV D+S+P+Y SCPHI+ F+C GR D KY K+RWQP C++PR +GK
Sbjct: 118 CNIYEGSWVYDESYPIYDYSSCPHIESQFDCLGRGRPDRKYLKYRWQPSGCDLPRFDGKK 297
Query: 193 MLKMLRGKRLVFVGDSLNRNMWDSLVCILSNSV 225
L +GK+L+F+GDS++ N W SL C+L ++V
Sbjct: 298 FLTKYKGKQLMFIGDSVSVNQWQSLKCMLHSAV 396
>AI967462
Length = 464
Score = 108 bits (270), Expect = 2e-24
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Frame = +1
Query: 251 TDYNCSIEFFRSPFLVQEWEMPGKKGSKKETLRLDLVERSCDKYKNADVLIFNTGHWWTH 310
T Y SI+ +R+P+LV + L LD ++++ + + + D+LIFN+ HWWTH
Sbjct: 10 TSYGVSIQLYRTPYLVDI-----VREDVGAVLALDSIQQA-NAWTDLDMLIFNSWHWWTH 171
Query: 311 EKTMEGKEYYQEGNHIHGQLNVEEAISKAFLTWSRWVDTNIDPKKTIVFFRGYSPSHFRG 370
+G +Y + G+++ ++ EA + TW+RWVD N+DP KT VFF+G SP+H++G
Sbjct: 172 TGDSQGWDYIRNGSNLVKDMDRLEAFYQGLTTWARWVDLNVDPTKTKVFFQGISPTHYQG 351
Query: 371 GEWDSGGR-CESETEPMKTESTDLSENPP 398
EW+ + C + EP+ S PP
Sbjct: 352 QEWNQPKKSCSGQIEPLSGSSYPAGLPPP 438
>AV777278
Length = 582
Score = 108 bits (269), Expect = 3e-24
Identities = 53/134 (39%), Positives = 76/134 (56%)
Frame = +3
Query: 133 CDIYEGSWVLDDSFPLYKSGSCPHIDEPFNCFLNGRRDNKYEKFRWQPKNCNMPRLNGKY 192
C+ + G WV D S+PLY +CP ID FNC GR D Y+++RWQP C +PR N
Sbjct: 201 CNWFRGKWVYDRSYPLYNPSTCPFIDPQFNCQKYGRPDTLYQQYRWQPFTCPLPRFNAWD 380
Query: 193 MLKMLRGKRLVFVGDSLNRNMWDSLVCILSNSVKNKSRIFEASGRQEFQTEDSYSFIFTD 252
L R K+++FVGDSL+ N ++SL C++ + V N F +Q T + F D
Sbjct: 381 FLLKYRNKKIMFVGDSLSLNQFNSLACMIHSWVPNTRTSF---SKQNVIT----TITFED 539
Query: 253 YNCSIEFFRSPFLV 266
Y + +R+P+LV
Sbjct: 540 YGLQLFLYRTPYLV 581
>AV766612
Length = 286
Score = 91.7 bits (226), Expect = 2e-19
Identities = 41/92 (44%), Positives = 58/92 (62%)
Frame = +2
Query: 294 YKNADVLIFNTGHWWTHEKTMEGKEYYQEGNHIHGQLNVEEAISKAFLTWSRWVDTNIDP 353
+++ADVLI N GHW +EKT++ Y+Q G + L E+A K+F T W+ + ++
Sbjct: 5 WRDADVLILNAGHWXNYEKTLKLCCYFQLGVEVKINLTTEDAFRKSFQTVVDWIASEVNT 184
Query: 354 KKTIVFFRGYSPSHFRGGEWDSGGRCESETEP 385
KT V FR Y+P HFRGG W++GG C ET P
Sbjct: 185 NKTYVLFRTYAPVHFRGGNWNTGGGCNLETLP 280
>TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%)
Length = 1365
Score = 91.3 bits (225), Expect = 3e-19
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Frame = -3
Query: 369 RGGEWDSGGRCESETEPMKTESTDLSENPPMMRTIESVIKGMKT---PVVYLNISKMTDF 425
R G W+ GG C+ E EP K + T L+ P I V++ M+ V +LNI+ +++
Sbjct: 970 RNGTWNEGGECDMEKEPEK-DHTKLATEPYYNTFISDVVEQMQYGSWKVHFLNITYLSEL 794
Query: 426 RHDAHPSMYRNMNMSEETKKYMLKHQDCSHWCLPGVPDLWNEFVYAHLL 474
R D HPS YR + QDCSHWCLPGVPD WNE +YA LL
Sbjct: 793 RKDGHPSKYREPGTPPDAP------QDCSHWCLPGVPDTWNELLYAQLL 665
>BU494295
Length = 403
Score = 84.0 bits (206), Expect = 5e-17
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Frame = +1
Query: 310 HEKTMEGKEYYQEGNHIHGQLNVEEAISKAFLTWSRWVDTNIDPKKTIVFFRGYSPSHFR 369
HE + + + EG+ + ++ A + TWS+WVD NIDP +T VFF SP H +
Sbjct: 10 HEVKCKRRGSFDEGSTEYDEIPRPIAYERVLKTWSKWVDDNIDPNRTKVFFSSMSPLHIK 189
Query: 370 GGEWD--SGGRCESETEPMKTEST--DLSENPPMMRTIESVIKGMKTPVVYLNISKMTDF 425
W+ +G +C ET P+ ST D+ + + +V M PV +LNI+ +++
Sbjct: 190 SEAWNNPNGIKCAKETTPILNMSTPLDVGTDRRLYVIANNVTHSMNVPVNFLNITSLSEL 369
Query: 426 RHDAHPSMY 434
R DAH S+Y
Sbjct: 370 RKDAHTSVY 396
>AV423696
Length = 427
Score = 80.9 bits (198), Expect = 4e-16
Identities = 49/137 (35%), Positives = 70/137 (50%)
Frame = +1
Query: 157 IDEPFNCFLNGRRDNKYEKFRWQPKNCNMPRLNGKYMLKMLRGKRLVFVGDSLNRNMWDS 216
I E NC NGR D+ + +RW+P CN+PR L+++R K + FVGDSL RN +S
Sbjct: 16 IKESHNCITNGRPDSDFLYWRWKPNECNIPRFEPHTFLQLIRNKHVAFVGDSLARNQLES 195
Query: 217 LVCILSNSVKNKSRIFEASGRQEFQTEDSYSFIFTDYNCSIEFFRSPFLVQEWEMPGKKG 276
L+C+LS AS + + + + F +N ++ + SPFLVQ E K G
Sbjct: 196 LLCMLS----------PASTLKLLHHKGARWWHFPSHNATLSSYWSPFLVQGAERL-KSG 342
Query: 277 SKKETLRLDLVERSCDK 293
T+ LD V K
Sbjct: 343 PHHNTMYLDHVNEKWAK 393
>BP051681
Length = 586
Score = 79.7 bits (195), Expect = 1e-15
Identities = 42/109 (38%), Positives = 56/109 (50%), Gaps = 1/109 (0%)
Frame = -3
Query: 367 HFRGGEWDSGGR-CESETEPMKTESTDLSENPPMMRTIESVIKGMKTPVVYLNISKMTDF 425
+FRG EW+ + C + EP+ S PP + V+K MK PV L+I+ ++
Sbjct: 518 NFRGQEWNQPKKSCSGQIEPLSGSSYPAGLPPPTT-IVNKVLKNMKKPVYLLDITLLSQL 342
Query: 426 RHDAHPSMYRNMNMSEETKKYMLKHQDCSHWCLPGVPDLWNEFVYAHLL 474
R DAHPS Y DCSHWCLPG+PD WNE + A L+
Sbjct: 341 RKDAHPSAYGGNQGGN----------DCSHWCLPGLPDTWNELLNAALM 225
>TC20057 similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (15%)
Length = 484
Score = 66.2 bits (160), Expect(2) = 3e-15
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = +1
Query: 400 MRTIESVIKGMKTPVVYLNISKMTDFRHDAHPSMYRNMNMSEETKKYMLKHQDCSHWCLP 459
M+ ++ VI+ M+ P ++I+ ++ R DAHPS+Y ++S + + DCS WCLP
Sbjct: 148 MKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSG-DLSPAPRANP-DYSDCSPWCLP 321
Query: 460 GVPDLWNEFVYAHLLY 475
G+PD WNE Y L Y
Sbjct: 322 GLPDAWNELFYTALFY 369
Score = 32.0 bits (71), Expect(2) = 3e-15
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Frame = +2
Query: 359 FFRGYSPSHFRGGEWDSG------GRCESETEPMKTEST 391
FF G SPSH EW SG C ET P+ + T
Sbjct: 2 FFLGISPSHTHPNEWSSGVTTVTSKNCYGETAPISSSGT 118
>TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial (8%)
Length = 547
Score = 77.0 bits (188), Expect = 6e-15
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +2
Query: 377 GRCESETEPMKTEST-DLSENPPMMRTIESVIKGMKTPVVYLNISKMTDFRHDAHPSMYR 435
G C E +P+ E + P MR++E ++ +K+ V LNI++M+++R D HPS++R
Sbjct: 2 GNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPSIFR 181
Query: 436 NM--NMSEETKKYMLKHQDCSHWCLPGVPDLWNEFVY 470
+ E + DC WCLPGVPD+WNE ++
Sbjct: 182 QFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLF 292
>BG662185
Length = 383
Score = 75.9 bits (185), Expect = 1e-14
Identities = 35/98 (35%), Positives = 57/98 (57%), Gaps = 5/98 (5%)
Frame = +1
Query: 382 ETEPMKTEST--DLSENPPMMRTIESVIKGMKTPVVYLNISKMTDFRHDAHPSMY---RN 436
ET P+ ST D+ + + ++ MK PV ++NI+ +++FR DAH S+Y +
Sbjct: 16 ETTPVLNMSTPLDVGTDRRLFVIANNLTHSMKVPVYFINITTLSEFRKDAHTSVYTIRQG 195
Query: 437 MNMSEETKKYMLKHQDCSHWCLPGVPDLWNEFVYAHLL 474
++ E + + DC HWCLPG+PD WNEF+Y ++
Sbjct: 196 KMLTPEQQADPATYADCIHWCLPGLPDTWNEFIYTRII 309
>CB829368
Length = 541
Score = 75.5 bits (184), Expect = 2e-14
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Frame = +2
Query: 131 NNCDIYEGSWVLD-DSFPLYKSGSCPHIDEPFNCFLNGRRDNKY-EKFRWQPKNCNMPRL 188
+ C++Y G+WV D D PLY +CP +NC N R++ + ++W P+ C++PR+
Sbjct: 122 SKCNLYRGNWVFDPDRTPLYDD-TCPFHRNAWNCIRNQRQNLSFINSWKWVPRGCDLPRI 298
Query: 189 NGKYMLKMLRGKRLVFVGDSLNRNMWDSLVCILSNSVKNKSRIFEASGRQEFQTEDSYSF 248
+ L ++R K + FVGDSLN N S +CIL R+ + R+ +
Sbjct: 299 DPFRFLGLMRNKNVGFVGDSLNENFLASFLCIL--------RVADKGARKWKKKGAWRGA 454
Query: 249 IFTDYNCSIEFFRSPFLVQ-EWE 270
F +N ++ + R+ L + +W+
Sbjct: 455 YFPKFNVTVGYHRAVLLSKYQWQ 523
>TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (12%)
Length = 555
Score = 73.9 bits (180), Expect = 5e-14
Identities = 42/118 (35%), Positives = 63/118 (52%), Gaps = 1/118 (0%)
Frame = +1
Query: 364 SPSHFRGGEWDSGGRCESETEPMKTESTDLSENPPMMRTIESVIKGMKTPVVYLNISKMT 423
SP H R W +C ++ P++ S P + + V+K M+ V +++ +T
Sbjct: 7 SPRHNRLNGW----KCYNQKHPIQFFSH--LHVPEPLVVLRGVLKRMRFQVYLQDVTTLT 168
Query: 424 DFRHDAHPSMYRN-MNMSEETKKYMLKHQDCSHWCLPGVPDLWNEFVYAHLLYIMKRN 480
FR D HPS+YR +++ + K DCSHWCLPGVPD+WNE + A L +K N
Sbjct: 169 AFRRDGHPSVYRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSAWL*L*LKWN 342
>TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial (13%)
Length = 538
Score = 72.0 bits (175), Expect = 2e-13
Identities = 37/95 (38%), Positives = 50/95 (51%)
Frame = +3
Query: 379 CESETEPMKTESTDLSENPPMMRTIESVIKGMKTPVVYLNISKMTDFRHDAHPSMYRNMN 438
C + EP+ ST + P + SV+K M PV L+I+ ++ R DAHPS Y +
Sbjct: 9 CSGQLEPL-AGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGEDH 185
Query: 439 MSEETKKYMLKHQDCSHWCLPGVPDLWNEFVYAHL 473
DCSHWCLPG+PD WN+ +YA L
Sbjct: 186 SGN----------DCSHWCLPGLPDTWNQLLYAAL 260
>TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;}, partial (8%)
Length = 868
Score = 71.6 bits (174), Expect = 3e-13
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Frame = +2
Query: 288 ERSCDKYKNADVLIFNTGHWWTHEKTMEGKEYYQE---GNHIHGQLNVEE-----AISKA 339
E+ + ++ D +I N GHW+T Y Q+ G H NV + +A
Sbjct: 68 EKWITQIEDFDYVILNGGHWFTRSMVF----YEQQKIIGCHYCLLENVPDLTMYYGYRRA 235
Query: 340 FLTWSRWVDTNIDPKKTIVFFRGYSPSHFRGGEWDSGGRCESETEPMKTESTD---LSEN 396
F T + +++ + K I F R +SPSHF G W+ GG C T+P ++ T L+
Sbjct: 236 FRTAFKAINS-LKNFKGITFLRTFSPSHFENGIWNEGGNC-VRTKPFRSNETQLEGLNLE 409
Query: 397 PPMMRTIESVI-------KGMKTPVVYLNISKMTDFRHDAHPSMYRNMNMSEETKKYMLK 449
M++ E I KG++ + + + T R D HPS Y + T
Sbjct: 410 YYMIQLEEFKIAEKEARKKGLRYRL--FDTMQATLLRPDGHPSKYGHWPNENVT-----L 568
Query: 450 HQDCSHWCLPGVPDLWNEFV 469
+ DC HWCLPG D W++F+
Sbjct: 569 YNDCVHWCLPGPIDTWSDFL 628
>BP048416
Length = 509
Score = 67.0 bits (162), Expect = 7e-12
Identities = 45/138 (32%), Positives = 65/138 (46%), Gaps = 10/138 (7%)
Frame = -1
Query: 358 VFFRGYSPSHFRGGEWDSGGRCESETEPMKTESTDLSENPPMMRTIE--------SVIKG 409
V R +SPSHF+G +WD GG C +++EP + L +R IE K
Sbjct: 503 VIMRTFSPSHFKG-DWDKGGTC-AKSEPYRKGEKXLEGMDAEIRRIEMEEVESAKGKAKQ 330
Query: 410 MKTPVVYLNISKMTDFRHDAHPSMYRNMNMSEETKKYMLKH--QDCSHWCLPGVPDLWNE 467
+ + ++++++ R D HP Y M + +H DC HWC+PG D WNE
Sbjct: 329 LGFRLELMDVTELALLRPDGHPGAY--MKPFPFANGVVQEHVQSDCVHWCVPGPIDTWNE 156
Query: 468 FVYAHLLYIMKRNRGNPK 485
F L IMK+ PK
Sbjct: 155 F----FLEIMKKWEEQPK 114
>TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial (40%)
Length = 579
Score = 63.2 bits (152), Expect = 9e-11
Identities = 28/77 (36%), Positives = 41/77 (52%)
Frame = +3
Query: 397 PPMMRTIESVIKGMKTPVVYLNISKMTDFRHDAHPSMYRNMNMSEETKKYMLKHQDCSHW 456
P + V+ M PV +L+++ ++ +R DAHP Y + + DCSHW
Sbjct: 33 PMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMAT-----------DCSHW 179
Query: 457 CLPGVPDLWNEFVYAHL 473
CLPG+PD WNE + A L
Sbjct: 180 CLPGLPDTWNELLAAAL 230
>BP054220
Length = 424
Score = 54.3 bits (129), Expect = 4e-08
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = -3
Query: 417 LNISKMTDFRHDAHPSMYRNMNMSEETKKY---MLKHQDCSHWCLPGVPDLWNEFVY 470
++I++ +RHD HP YR+ + ++ TK+ QDC HWC+PG D WNE V+
Sbjct: 422 MDITEAFQYRHDGHPGPYRSPDPNKLTKRGPDGRPPPQDCLHWCMPGPVDTWNELVF 252
>CB828327
Length = 568
Score = 52.8 bits (125), Expect = 1e-07
Identities = 37/108 (34%), Positives = 52/108 (47%), Gaps = 11/108 (10%)
Frame = +1
Query: 371 GEWDSGGRCESETEPMKTESTDLSENPPMMRTI--ESVIK--------GMKTPVVYLNIS 420
G WD GG C S P + + L +N +R I E + K G + L+++
Sbjct: 4 GSWDKGGTC-SRLTPYRGKRK-LGKNDAEIRRIGLEEMQKAKDKAKYFGRYFKIKALDVT 177
Query: 421 KMTDFRHDAHPSMYRNMN-MSEETKKYMLKHQDCSHWCLPGVPDLWNE 467
K++ R D HP Y + N S+ K + H DC+HWCLP D WNE
Sbjct: 178 KLSLMRPDGHPGAYVSPNAFSKGVTKVV--HNDCTHWCLP*PIDTWNE 315
>CB827623
Length = 419
Score = 52.4 bits (124), Expect = 2e-07
Identities = 22/57 (38%), Positives = 32/57 (55%)
Frame = +2
Query: 133 CDIYEGSWVLDDSFPLYKSGSCPHIDEPFNCFLNGRRDNKYEKFRWQPKNCNMPRLN 189
CDI+ G WV + P Y + +C I E NC GR D+++ K+RW+P +P N
Sbjct: 233 CDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNGXELPIFN 403
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,076,185
Number of Sequences: 28460
Number of extensions: 160810
Number of successful extensions: 1174
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of query: 486
length of database: 4,897,600
effective HSP length: 94
effective length of query: 392
effective length of database: 2,222,360
effective search space: 871165120
effective search space used: 871165120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146329.6