TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145221.10 - phase: 0 
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    89  2e-19
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    80  1e-16
BP046665                                                               49  2e-07
BP065488                                                               48  3e-07
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    44  6e-06
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     40  7e-05
TC9013                                                                 32  0.018
TC9485 similar to UP|Q8S999 (Q8S999) Glucosyltransferase-10, par...    27  0.98
BP057032                                                               26  1.3
TC17624                                                                26  1.3
BP081760                                                               25  2.2
AW720377                                                               24  4.9
CN825332                                                               23  8.3

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 88.6 bits (218), Expect = 2e-19
 Identities = 40/68 (58%), Positives = 55/68 (80%)
 Frame = +1

Query: 1   MTINKSQGQSLKHDGVYLPTPVFSHGQLHVVVSKVTSREWLKILIIDEDGEDTDETSNIV 60
           MTINKSQGQSL H  +YL  PVF+HGQL+V +S+V SR+ LK+L++DE+ + T+ T N+V
Sbjct: 244 MTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKNVV 423

Query: 61  YEEVFQNV 68
           Y EVF+N+
Sbjct: 424 YREVFENI 447


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 36/68 (52%), Positives = 53/68 (77%)
 Frame = +2

Query: 1   MTINKSQGQSLKHDGVYLPTPVFSHGQLHVVVSKVTSREWLKILIIDEDGEDTDETSNIV 60
           MTINKSQG+SL H G+YL  PV +HG L+V + +V SR+ LK+L++DE+ + T+ T N+V
Sbjct: 272 MTINKSQGRSLSHVGLYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVV 451

Query: 61  YEEVFQNV 68
           Y E+F+N+
Sbjct: 452 YREIFENI 475


>BP046665 
          Length = 524

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = -1

Query: 1   MTINKSQGQSLKHDGVYLPTPVFSHGQLHVVV-SKVTSR 38
           MTINKSQGQSL H G+YL   VF+HGQL+V + +K+  R
Sbjct: 248 MTINKSQGQSLSHVGLYLSRHVFTHGQLYVALHAKIKKR 132



 Score = 35.8 bits (81), Expect = 0.002
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = -2

Query: 17  YLPTPVFSHGQLHVVVSKVTSREWLKILIIDEDGEDTDETSNIVY 61
           Y+   ++SH     ++S + SR+ LK+L++DE+ + T+ T N+VY
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>BP065488 
          Length = 439

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 31/76 (40%), Positives = 46/76 (59%), Gaps = 8/76 (10%)
 Frame = -1

Query: 1   MTINKSQGQSLKHDGVYLPTPV-------FSH-GQLHVVVSKVTSREWLKILIIDEDGED 52
           MTINKSQ        V+ PT         +SH  +L+V +S V SR+ LK+L++ E+ + 
Sbjct: 277 MTINKSQXS------VHYPTVALISFLACYSHMDKLYVALSGVRSRKGLKLLVLGEEEKV 116

Query: 53  TDETSNIVYEEVFQNV 68
           T+ T N VY+EVF+N+
Sbjct: 115 TNATKNEVYQEVFKNI 68


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 18/36 (50%), Positives = 29/36 (80%)
 Frame = +3

Query: 33  SKVTSREWLKILIIDEDGEDTDETSNIVYEEVFQNV 68
           S+V SR+ LK+L++DE+ + T+ T N+VY EVF+N+
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +2

Query: 28 LHVVVSKVTSREWLKILIIDEDGEDTDETSNIVYEEVFQNV 68
          L+V VS+V S++ LKILI  +       T NIVY+EVFQ +
Sbjct: 2  LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKI 124


>TC9013 
          Length = 766

 Score = 32.3 bits (72), Expect = 0.018
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 40  WLKILIIDEDGEDTDETSNIVYEEVFQNV 68
           ++ ILI D D  +++ TSN+VY EVF+ V
Sbjct: 618 FILILICDGDDSNSNSTSNVVYTEVFRTV 704


>TC9485 similar to UP|Q8S999 (Q8S999) Glucosyltransferase-10, partial (75%)
          Length = 1195

 Score = 26.6 bits (57), Expect = 0.98
 Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 7/48 (14%)
 Frame = +1

Query: 21  PVFSHGQLHVVVSKVTSREW--LKILIIDEDGE-----DTDETSNIVY 61
           PV+S G LH+++  VT +    L   +  ED E     DT E +++VY
Sbjct: 814 PVYSIGPLHLLIKDVTDKNLNSLGSNLWKEDSECLKWLDTKEPNSVVY 957


>BP057032 
          Length = 523

 Score = 26.2 bits (56), Expect = 1.3
 Identities = 16/56 (28%), Positives = 26/56 (45%)
 Frame = +2

Query: 11  LKHDGVYLPTPVFSHGQLHVVVSKVTSREWLKILIIDEDGEDTDETSNIVYEEVFQ 66
           L HDG +        G  HV V  +   E L +L+ DE+  DT     I  +++++
Sbjct: 296 LNHDGKW-----DDXGTGHVTVDYLERSEELGLLVYDEEDNDTILRQRISSDDIYR 448


>TC17624 
          Length = 615

 Score = 26.2 bits (56), Expect = 1.3
 Identities = 10/13 (76%), Positives = 13/13 (99%)
 Frame = +1

Query: 56  TSNIVYEEVFQNV 68
           TSN+VY+EVF+NV
Sbjct: 535 TSNVVYKEVFRNV 573


>BP081760 
          Length = 355

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 24  SHGQLHVVVSKVTSREWLKILIIDEDGEDT 53
           SHG +    S  +    L++L  DEDGEDT
Sbjct: 282 SHGAVWTSSSPPSGPLSLRMLFSDEDGEDT 193


>AW720377 
          Length = 597

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (53%)
 Frame = +1

Query: 3   INKSQGQSLKHDGVYLPTPVFSHGQLHVVVSKVTS 37
           +N +    L ++ + +P P   +GQ HVV S  +S
Sbjct: 451 LNSNPVSHLGYEPIPIPNPNLPYGQGHVVDSNASS 555


>CN825332 
          Length = 612

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 42  KILIIDEDGEDTDETSNIVYEEV 64
           KILI      DTD TS+I + EV
Sbjct: 518 KILIFKFSTIDTDSTSSISFSEV 450


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,135,972
Number of Sequences: 28460
Number of extensions: 12479
Number of successful extensions: 48
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)