TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144929.16 + phase: 0 
         (143 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9551 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, partia...    27  1.0
TC18524                                                                26  2.3
TC13607 weakly similar to UP|AAQ65116 (AAQ65116) At1g16790, part...    25  5.1
TC11210 similar to GB|AAP47478.1|32331901|AY164904 RTNLB7 {Oryza...    25  6.7
AV769619                                                               24  8.7

>TC9551 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, partial (24%)
          Length = 566

 Score = 27.3 bits (59), Expect = 1.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 125 TADHATSTNEKLCKVGPYY 143
           T +HA S N+ LC++ PY+
Sbjct: 320 TINHAESLNDNLCRIHPYW 376


>TC18524 
          Length = 452

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 86  RASVRETQVKQGRRSALHIIKKMSNMVLSSSKSCNTYG 123
           R S R+   KQ   + L     M   +LSS+KS NT+G
Sbjct: 218 RPSQRQKLQKQKTTARLEEALDMQGTLLSSNKSINTWG 105


>TC13607 weakly similar to UP|AAQ65116 (AAQ65116) At1g16790, partial (30%)
          Length = 597

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 12/28 (42%), Positives = 18/28 (63%)
 Frame = +3

Query: 44  LSRKKTDGLETEDLGNKVICPLQEYLLG 71
           +S  ++ G+ETE+   KVI  LQ+ L G
Sbjct: 219 ISHYESQGMETEEASLKVIEDLQKALFG 302


>TC11210 similar to GB|AAP47478.1|32331901|AY164904 RTNLB7 {Oryza sativa
           (japonica cultivar-group);} , partial (7%)
          Length = 602

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 10/16 (62%), Positives = 13/16 (80%)
 Frame = +1

Query: 19  EKFVEADEECFYESSG 34
           E+FVEA +EC +ES G
Sbjct: 349 EEFVEAFQECCWESCG 396


>AV769619 
          Length = 499

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 10 QLKLIS--YELEKFVEADEECFYESS 33
          ++KL S  YE  K ++ D ECFY+ +
Sbjct: 54 EVKLFSPHYEKIKKIKMDRECFYDKT 131


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.312    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,963,655
Number of Sequences: 28460
Number of extensions: 18843
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)