TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144928.9 - phase: 2 /pseudo
         (1036 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089540                                                               72  3e-26
AW164046                                                               30  2.6
TC18021 similar to UP|AAH27795 (AAH27795) Zfp294 protein (Fragme...    29  3.4
BP051596                                                               29  4.4
AV769010                                                               28  5.7
TC19690                                                                28  7.5
TC18614 similar to UP|Q94KA9 (Q94KA9) Importin alpha 2, partial ...    28  9.8
TC9112 weakly similar to UP|Q9SI70 (Q9SI70) F23N19.16, partial (...    28  9.8
AV768241                                                               28  9.8
BF177663                                                               28  9.8

>AU089540 
          Length = 660

 Score = 71.6 bits (174), Expect(2) = 3e-26
 Identities = 43/81 (53%), Positives = 49/81 (60%)
 Frame = +2

Query: 848 LFYAK*RP*DHFLWINCTTGGRVILA*AA*LIFSRKTRWIILIQ*SNQWCIYLCSIS*PI 907
           L+YA+ + *DHFLWINC TGGRV L  A  LIF  K + I  IQ SN WCI  CSI   I
Sbjct: 404 LYYARLQL*DHFLWINCNTGGRVHLGSAVLLIFCPKIQLICSIQSSNPWCICPCSIFLAI 583

Query: 908 QDLLSQITILCCFVLYTV*LA 928
           Q   S++       L TV*LA
Sbjct: 584 QGQASEVITWFWSALCTV*LA 646



 Score = 65.1 bits (157), Expect(2) = 3e-26
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = +3

Query: 753 KIQGFIQPENSWCIQAI*VLSYTGWEAAITRSQDPGRRLSYFATCWSMLRINYQIE*SNI 812
           K QGFI+P+N W   AI +L +  ++AA+ R +     LS F +CW  LR +YQ +* NI
Sbjct: 186 KDQGFIKPKNPWRSPAIQILRWADFQAAVARRKITSS*LSPFISCWCYLRHSYQSK**NI 365

Query: 813 WCIWLHLYGDCCI 825
              W+H+Y  CC+
Sbjct: 366 RVSWIHIYCHCCL 404


>AW164046 
          Length = 421

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 160 DFSSSSETFC----SAGSYCPTTTTKFPCSSGLRKAEFM*F*HSNPKHACIWSYAHCC 213
           +FSSS   F         Y P +T     SS  +  + +  *H N K   +W Y+HCC
Sbjct: 244 NFSSSDYRFSLLLEKETEYPPDSTNCSEGSSICKSKDSLFT*HPNDKA**LWQYSHCC 417


>TC18021 similar to UP|AAH27795 (AAH27795) Zfp294 protein (Fragment),
           partial (10%)
          Length = 646

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 15/39 (38%), Positives = 22/39 (55%)
 Frame = +1

Query: 561 KEAGKCWIRNGYGTFTFDVR*TNIWPGQCIISAPSKSTK 599
           +EAG+C+  +GY  F+ + R   + P  C IS  S  TK
Sbjct: 388 EEAGQCFATHGYVIFSIEAREMYLIPFSCKISPFSLYTK 504


>BP051596 
          Length = 505

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 159 ADFSSSSETFCSAGSYCPTTTTKFP 183
           ++ SSSSE+  S GSY  T+T+ FP
Sbjct: 331 SESSSSSESLTSLGSYSSTSTSLFP 405


>AV769010 
          Length = 369

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 11/36 (30%), Positives = 17/36 (46%), Gaps = 1/36 (2%)
 Frame = +2

Query: 445 HRYHGPVRGWQDN-ISFSSSWKSTWMLGYWFNSDKW 479
           H Y+GP R WQDN     +  +      +W ++  W
Sbjct: 191 HYYYGPCRSWQDNTFGLYTEEQGCCFRSWWDHTGNW 298


>TC19690 
          Length = 581

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 21/64 (32%), Positives = 26/64 (39%), Gaps = 1/64 (1%)
 Frame = -3

Query: 94  ARTSNCRACCEGFFCPHGITCMIPCPLGSYCPIATLNKTTGVCEPYLYQLPPMQP-NHTC 152
           A  SN R      FC     C IP  +G  CP     +T    EP  Y   P++  N  C
Sbjct: 279 ALLSNTRPRIRRVFCKVTSLCDIPGSVGPPCP-----RTETSPEPIPYCRGPLRALNEVC 115

Query: 153 GGAN 156
           G +N
Sbjct: 114 GASN 103


>TC18614 similar to UP|Q94KA9 (Q94KA9) Importin alpha 2, partial (27%)
          Length = 538

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
 Frame = -2

Query: 51  SANYLKPNRNCNLTSWVSGC---------EPGWACSVPSGQKIDLKDS-KEMPARTSN-- 98
           SA Y++    C   SW+            +P W   VP+  +    +  KE+ A   +  
Sbjct: 408 SAEYVQSKAACETASWIQAACYCHHSKHPQP-WLGGVPTSSRRQWSERRKELAAEAGDPR 232

Query: 99  ---------CRACCEGFFCPHGITCMIPCP 119
                    C +C    +CPHG+  ++  P
Sbjct: 231 VSSSTSSPPCDSCGSRPWCPHGVCDLLQRP 142


>TC9112 weakly similar to UP|Q9SI70 (Q9SI70) F23N19.16, partial (53%)
          Length = 807

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
 Frame = +1

Query: 18  SSCIKKTKGDISNRLCTAAEVKFYLNSLME--KSSSANYLKPNRNCNLTSWVSGCEPGWA 75
           +SC    K  +  +L     + FY   L++  K S+   L+ +R C +TS +S C+ G A
Sbjct: 229 ASCCDAIKKTVETQLTCLCNL-FYSPGLLQSFKISTDQALQLSRRCGVTSDLSSCKSGSA 405

Query: 76  CSVPS 80
            S  S
Sbjct: 406 PSPAS 420


>AV768241 
          Length = 434

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 202 KHACIWSYAHCCFEYFATHYL 222
           KH   WSYA CC+E + ++ L
Sbjct: 324 KHT*PWSYASCCYE*YQSNLL 386


>BF177663 
          Length = 283

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
 Frame = +1

Query: 782 TRSQDPGRRLSYFATCWSMLRINYQIE*SNIWCIWLHLYGDCCILLYSTHHSFEEFFVLI 841
           TRS    R L  +  CW MLR           CIW+ L     I L S     +  FVL+
Sbjct: 10  TRSLANFRVLLCYVHCWEMLRT----------CIWIFL-----IFLQSLKFMHDGVFVLV 144

Query: 842 --------RCCQFQLFYAK 852
                    C  F L Y K
Sbjct: 145 YESRYWFDLCLDFNLRYMK 201


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.354    0.153    0.599 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,789,625
Number of Sequences: 28460
Number of extensions: 447772
Number of successful extensions: 6001
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4349
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 4825
length of query: 1036
length of database: 4,897,600
effective HSP length: 99
effective length of query: 937
effective length of database: 2,080,060
effective search space: 1949016220
effective search space used: 1949016220
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 60 (27.7 bits)