TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144617.5 + phase: 0 
         (428 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV410093                                                               34  0.053
BI418618                                                               31  0.34
TC15668 similar to UP|O81816 (O81816) Monooxygenase (Monooxygena...    30  0.58
TC17357 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, par...    28  2.2
TC17571 similar to UP|Q9AXI4 (Q9AXI4) APETAL2-like protein, part...    28  2.9
AU251432                                                               28  3.8
TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  ...    28  3.8
BP070882                                                               27  4.9
BP034436                                                               27  6.5
BP070416                                                               27  8.4

>AV410093 
          Length = 428

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 18/55 (32%), Positives = 27/55 (48%)
 Frame = +2

Query: 5   GRKPKAVIVGGSIGGISSAHALILAGWDVLVLEKTTSPPTGSPTGAGLGLNSLSQ 59
           GRK +A ++GG   G S+A AL   G +  + E+   P    P G  + L  L +
Sbjct: 176 GRKLRAAVIGGGPAGASAAEALATGGIETFLFER-NPPSVPKPCGGAIPLCMLEE 337


>BI418618 
          Length = 601

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
 Frame = +2

Query: 199 FSEIENSETIKGIKKAYPDLGKCLYFDLASGTHSVLYELPN-------KKLNWIWYVNQP 251
           +++ +NS  +    + YP +G  L  +L +  H  L +L          KL  I  +   
Sbjct: 68  YNQTQNSSKLPPGPRPYPIIGNIL--ELGTNPHISLTKLSKIYGPIMTLKLGTITTIVIS 241

Query: 252 EPEV-------KGTSVTTKVTSDMIQKM-HQEAEKIWIPELAK 286
            P++        G + ++++ S  +Q + HQ+   +W+P LAK
Sbjct: 242 SPQLAKQVLQENGQTFSSRIVSHAVQAVEHQKCSAVWLPPLAK 370


>TC15668 similar to UP|O81816 (O81816) Monooxygenase (Monooxygenase 2) (MO2)
           , partial (24%)
          Length = 528

 Score = 30.4 bits (67), Expect = 0.58
 Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
 Frame = +3

Query: 312 NVVLVGEAAHPTTPHYLRSTNMTILDAAVLGKCIEKWGTEMLE--SALEEYQLTRLPVTS 369
           NV + G+A HP TP   +     + D  VL +C+ K  +E  +     EE +  R+  + 
Sbjct: 18  NVCVAGDAHHPMTPDLGQGGCCALEDGVVLARCLAKAFSEKSKERKGEEEEEYKRIEESL 197

Query: 370 KQVLHARR 377
           K+    R+
Sbjct: 198 KKYADERK 221


>TC17357 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, partial (24%)
          Length = 577

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 321 HPTTPHYLRSTNMTILDAAVLGKC 344
           HPT P ++ S+ +T L++ + GKC
Sbjct: 243 HPTMPEHVPSSELTQLNSMIRGKC 172


>TC17571 similar to UP|Q9AXI4 (Q9AXI4) APETAL2-like protein, partial (17%)
          Length = 489

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = +3

Query: 45  GSPTGAGLGLNSLSQQIIQSWISKPPQFL 73
           G   G+ L L+S   Q +Q W S PP +L
Sbjct: 225 GGRVGSDLSLSSSDHQHLQQWQSGPPHYL 311


>AU251432 
          Length = 364

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 15/40 (37%), Positives = 26/40 (64%)
 Frame = -1

Query: 125 QIFLWGHIFLSFHVANEKGPVIVKAKVVKTGEVIEIVGDL 164
           Q+  + +IFL FH+ +EKG  +    + KT E++++ GDL
Sbjct: 277 QLLPFDYIFL-FHL-DEKGVELFNLDLQKTEEIVDLFGDL 164


>TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  , partial
           (27%)
          Length = 1135

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 11  VIVGGSIGGISSAHALILAGWDVLVLEKTTSPP 43
           ++VG  + G + AH L   G  VLV+E+  + P
Sbjct: 781 IVVGAGVAGAALAHTLGKDGRQVLVIERDLTEP 879


>BP070882 
          Length = 496

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 408 LTNTPFFNDAPLSFASVTSS 427
           L+++P FND P SF+S +SS
Sbjct: 98  LSSSPLFNDTPSSFSSPSSS 157


>BP034436 
          Length = 417

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 36  LEKTTSPPTGSPTGAGLGLNSLS 58
           +EK   PPT SP+   L LNSL+
Sbjct: 176 MEKFMLPPTSSPSSPSLPLNSLT 244


>BP070416 
          Length = 399

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 223 YFDLASGTHSVLYELPNKKLNWIW 246
           Y  +A G+   L+  PN++ +W+W
Sbjct: 141 YIYIAVGSGGYLHPAPNRRQSWVW 212


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,852,613
Number of Sequences: 28460
Number of extensions: 108482
Number of successful extensions: 566
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of query: 428
length of database: 4,897,600
effective HSP length: 93
effective length of query: 335
effective length of database: 2,250,820
effective search space: 754024700
effective search space used: 754024700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)