BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141109.13 - phase: 0
(208 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13749 similar to UP|Q9FKW9 (Q9FKW9) Alpha-mannosidase, partial... 40 2e-04
TC11916 similar to UP|P94078 (P94078) Alpha-mannosidase (AT3G267... 40 4e-04
BP041569 36 0.004
TC19915 homologue to UP|Q39834 (Q39834) Clathrin heavy chain, pa... 28 1.2
TC14843 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein (At1g7870... 28 1.5
TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F... 28 1.5
TC13362 weakly similar to UP|CAE54285 (CAE54285) Receptor-like k... 27 2.0
TC9360 27 3.3
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,... 26 4.4
BU494273 26 4.4
TC15225 similar to UP|Q9SLW7 (Q9SLW7) TMV response-related gene ... 26 4.4
AV771091 26 5.7
BP028625 26 5.7
TC9139 similar to UP|Q9LNA8 (Q9LNA8) F5O11.10, partial (12%) 26 5.7
TC17775 similar to UP|ARC2_LYCES (Q42885) Chorismate synthase 2,... 26 5.7
TC15682 similar to GB|AAH23887.1|23272246|BC023887 Npdc1 protein... 26 5.7
TC14780 26 5.7
BP035660 26 5.7
AU251967 25 7.5
TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%) 25 7.5
>TC13749 similar to UP|Q9FKW9 (Q9FKW9) Alpha-mannosidase, partial (17%)
Length = 618
Score = 40.4 bits (93), Expect = 2e-04
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = +1
Query: 138 KLKVFVVPHSHNDPGWKLTVEEYYDRQSRHILDTIVETL 176
KL V +VPHSH+D GW TV++Y+ + I T +E +
Sbjct: 124 KLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQGTSIENV 240
>TC11916 similar to UP|P94078 (P94078) Alpha-mannosidase
(AT3G26720/MLJ15_12), partial (14%)
Length = 547
Score = 39.7 bits (91), Expect = 4e-04
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 8/48 (16%)
Frame = +1
Query: 137 EKLKVFVVPHSHNDPGWKLTVEEYYDRQS--------RHILDTIVETL 176
+K+ V +VPHSH+D GW TV++YY + +++LD+++ +L
Sbjct: 151 DKINVHLVPHSHDDVGWLKTVDQYYVGGNNSIRGACVQNVLDSVISSL 294
>BP041569
Length = 512
Score = 36.2 bits (82), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = +1
Query: 138 KLKVFVVPHSHNDPGWKLTVEEYYDRQS--------RHILDTIVETL 176
KL V +V H+H+D GW TV++YY + +++LD+IV L
Sbjct: 94 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPAL 234
>TC19915 homologue to UP|Q39834 (Q39834) Clathrin heavy chain, partial (5%)
Length = 447
Score = 28.1 bits (61), Expect = 1.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 10 NWAQSILPSSNPKSKQPRKSKRRTLVKDFIFSNFFIIGLIISLLFFL 56
+W + SS+ R+SKR+ L + N+F++ L SL FFL
Sbjct: 224 HWRGRGIASSHSGHWWCRQSKRQQLSIHILLLNYFLLFLFFSLHFFL 84
>TC14843 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein
(At1g78700/F9K20_26), partial (23%)
Length = 598
Score = 27.7 bits (60), Expect = 1.5
Identities = 11/27 (40%), Positives = 19/27 (69%)
Frame = +1
Query: 38 FIFSNFFIIGLIISLLFFLIVLLRFGV 64
F +S +F++GLI S + + ++L FGV
Sbjct: 379 FFYSFYFLLGLICSQVIYTALVLDFGV 459
>TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F9N11_110
{Arabidopsis thaliana;}, partial (45%)
Length = 561
Score = 27.7 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = -3
Query: 95 GGFASVDLTTKGLYDKIEFLDVDGGAWKQGWS 126
GGF G+ + D DGGAW+ GWS
Sbjct: 229 GGFGRKRSREVGIDEGRRGGDGDGGAWRTGWS 134
>TC13362 weakly similar to UP|CAE54285 (CAE54285) Receptor-like kinase with
LRR repeats (Fragment), partial (60%)
Length = 519
Score = 27.3 bits (59), Expect = 2.0
Identities = 22/72 (30%), Positives = 31/72 (42%)
Frame = -3
Query: 1 MAFSSRRGGNWAQSILPSSNPKSKQPRKSKRRTLVKDFIFSNFFIIGLIISLLFFLIVLL 60
+A S+ + N S S+ P SK P + RT +S GL F +
Sbjct: 190 IASSAAKLPNSLPSTHGSTFPSSKAPLTNSHRTTXSSSRYST----GL------FPVTXS 41
Query: 61 RFGVPKPITTHF 72
R +PKP T+HF
Sbjct: 40 RIRIPKPYTSHF 5
>TC9360
Length = 681
Score = 26.6 bits (57), Expect = 3.3
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Frame = +1
Query: 121 WKQGWSVSYRGDEWDNEKLKVFVVPHSHNDPGWKLTV-----EEYYDRQSRHIL---DTI 172
WK GW+++ W + F+ + N W V + Y+ R L +
Sbjct: 40 WKIGWAIAPPHLTWGVRQAHAFLTFATSNANPWAAAVALRAPDSYFVDLKRDYLAKRAIL 219
Query: 173 VETLSKVKFCLFPFLGFGDFYVYV 196
VE L+ V F +FP G ++V V
Sbjct: 220 VEGLNAVGFKVFP--SSGTYFVVV 285
>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1268
Score = 26.2 bits (56), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +1
Query: 187 LGFGDFYVYVCCYCCLFYEAL 207
L + YVYVCCY + Y L
Sbjct: 1054 LMYVSIYVYVCCYIYIHYSRL 1116
>BU494273
Length = 468
Score = 26.2 bits (56), Expect = 4.4
Identities = 11/34 (32%), Positives = 14/34 (40%)
Frame = +3
Query: 120 AWKQGWSVSYRGDEWDNEKLKVFVVPHSHNDPGW 153
AWK D W ++KLK V+ S W
Sbjct: 39 AWKSNIEQRSDEDSWSSQKLKADVIQDSSKPSSW 140
>TC15225 similar to UP|Q9SLW7 (Q9SLW7) TMV response-related gene product,
partial (24%)
Length = 546
Score = 26.2 bits (56), Expect = 4.4
Identities = 11/35 (31%), Positives = 20/35 (56%)
Frame = +2
Query: 18 SSNPKSKQPRKSKRRTLVKDFIFSNFFIIGLIISL 52
+SNP SK + + + IFS+F I+ ++S+
Sbjct: 134 TSNPDSKTKKNHRSPFFISIAIFSSFIILNSLVSI 238
>AV771091
Length = 341
Score = 25.8 bits (55), Expect = 5.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 193 YVYVCCYCCLFYEAL 207
YVYVCCY + Y L
Sbjct: 47 YVYVCCYIYIHYSRL 3
>BP028625
Length = 566
Score = 25.8 bits (55), Expect = 5.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 40 FSNFFIIGLIISLLFFLIVLLRFGV 64
F FF LII +LFFL L R V
Sbjct: 119 FGIFFFTVLIICILFFLFSLFRLSV 45
>TC9139 similar to UP|Q9LNA8 (Q9LNA8) F5O11.10, partial (12%)
Length = 1084
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +1
Query: 180 KFCL------FPFLGFGDFYVYVCCYCCLFYEALT 208
KFC+ F FLGF +F+ + C+F++ T
Sbjct: 358 KFCVI*SVRNFQFLGFIEFFPQPSSFSCVFFKWFT 462
>TC17775 similar to UP|ARC2_LYCES (Q42885) Chorismate synthase 2,
chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase 2) ,
partial (11%)
Length = 714
Score = 25.8 bits (55), Expect = 5.7
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +1
Query: 182 CLFPFLGFGDFYVYVCCYCCLF 203
C F FL F ++ + YCC+F
Sbjct: 427 CFFFFLIFRSYFHFFHLYCCMF 492
>TC15682 similar to GB|AAH23887.1|23272246|BC023887 Npdc1 protein {Mus
musculus;} , partial (5%)
Length = 783
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 2/28 (7%)
Frame = +3
Query: 179 VKFCLFPFLGFGDFYVYV--CCYCCLFY 204
VK L + FY YV CC+ C FY
Sbjct: 699 VKIWLLKMMILCSFYCYVISCCFLCSFY 782
>TC14780
Length = 671
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +3
Query: 170 DTIVETLSKVKFCLFPFLGFGDFYVYVCC 198
+ IV T S+VKFC+ P+L +Y+ C
Sbjct: 231 ELIVVTHSQVKFCVLPYL------IYLSC 299
>BP035660
Length = 480
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 2/28 (7%)
Frame = +2
Query: 179 VKFCLFPFLGFGDFYVYV--CCYCCLFY 204
VK L + FY YV CC+ C FY
Sbjct: 203 VKIWLLKMMILCSFYCYVISCCFLCSFY 286
>AU251967
Length = 380
Score = 25.4 bits (54), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 183 LFPFLGFGDFYVYVCCYCC 201
LFPF F + CCYCC
Sbjct: 171 LFPFFFFPP--THCCCYCC 221
>TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%)
Length = 557
Score = 25.4 bits (54), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 183 LFPFLGFGDFYVYVCCYCC 201
LFPF F + CCYCC
Sbjct: 378 LFPFFFFPP--THCCCYCC 328
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.143 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,520,880
Number of Sequences: 28460
Number of extensions: 68529
Number of successful extensions: 838
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of query: 208
length of database: 4,897,600
effective HSP length: 86
effective length of query: 122
effective length of database: 2,450,040
effective search space: 298904880
effective search space used: 298904880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC141109.13