TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141106.11 + phase: 0 /pseudo
         (333 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV421223                                                               40  2e-07
TC15639 weakly similar to UP|BAD05341 (BAD05341) Membrane protei...    51  3e-07
TC15952 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Ar...    41  3e-04
AV413701                                                               30  0.43
AV778804                                                               28  2.1
TC17199                                                                27  4.8

>AV421223 
          Length = 414

 Score = 40.0 bits (92), Expect(2) = 2e-07
 Identities = 18/26 (69%), Positives = 19/26 (72%)
 Frame = +2

Query: 65 FTGISVNAFLKGVNTWKKETLTKKVA 90
          F G S  AFLKGV TWKKET+ KK A
Sbjct: 5  FIGTSTKAFLKGVETWKKETIMKKEA 82



 Score = 30.8 bits (68), Expect(2) = 2e-07
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 122 KALFLLSRMFIGRNLDFFSLFGS*YLHYR 150
           + LFL  +M+ GR+LDF  LFG   LHY+
Sbjct: 180 RCLFL--KMYTGRSLDFLHLFGFHSLHYK 260


>TC15639 weakly similar to UP|BAD05341 (BAD05341) Membrane protein-like,
           partial (25%)
          Length = 556

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 49/116 (42%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = +2

Query: 221 DLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESL 280
           +LE  LR QV  PLL+*H  HL L +NIT *  F   ML TL     L H   N+   SL
Sbjct: 20  NLELHLRLQVPQPLLE*HSQHLYLLYNITS*IDFLCLMLSTLPSWQPLRHTEDNL---SL 190

Query: 281 LPY*---EEHQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVTYVRTRL 333
           +  *   +E   S+   PSQ+L V  + VE+A Q *L   K  +TWDL T+    L
Sbjct: 191 ISS*ICFKELL*SYLPWPSQYLLVQLYWVEKAYQT*LGRFKGVNTWDLRTFASMML 358


>TC15952 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
           thaliana;}, partial (19%)
          Length = 535

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 34/69 (49%), Positives = 37/69 (53%)
 Frame = +3

Query: 241 HLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PSQFL* 300
           HLCL  N T *NVFQF ML T      L   L +I *E L  Y  EH  S   *P+Q+L 
Sbjct: 3   HLCLL*NTTC*NVFQFLMLVTSHWWLQLQPWLDSIL*EGLSSYSGEHLSSSLF*PAQYLS 182

Query: 301 VVYH*VEQA 309
           V   *VE A
Sbjct: 183 VQSP*VELA 209


>AV413701 
          Length = 416

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = -2

Query: 58  TTLLIIFFTGISVNAFLKGVNTWKKET 84
           TT +++FF  IS N  + G+++W K T
Sbjct: 127 TTTILVFFESISFNFSISGISSWFKST 47


>AV778804 
          Length = 573

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (46%)
 Frame = -1

Query: 227 RWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL 262
           +W     L   HF HL  WWN        +H++F+L
Sbjct: 276 KWLSCSSLCGLHFFHLLFWWN--------WHLIFSL 193


>TC17199 
          Length = 540

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = +2

Query: 238 HFLHLCLWWNITF*NVFQFHMLFTL*L*PLL 268
           +F+HLC+WW      +F F  +  L + PL+
Sbjct: 293 NFVHLCIWW------IFNFFPVLLLRIFPLV 367


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.171    0.620 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,647,941
Number of Sequences: 28460
Number of extensions: 84055
Number of successful extensions: 1050
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of query: 333
length of database: 4,897,600
effective HSP length: 91
effective length of query: 242
effective length of database: 2,307,740
effective search space: 558473080
effective search space used: 558473080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 55 (25.8 bits)