BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.5 - phase: 0
(814 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15463 similar to PIR|T01259|T01259 AMP deaminase homolog F16M1... 44 1e-04
AV781245 41 7e-04
TC13827 34 0.081
BP042272 33 0.24
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 32 0.40
BI420016 31 0.69
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 31 0.90
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 31 0.90
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 31 0.90
BU494118 30 1.2
BP030058 30 1.5
BP028844 30 1.5
TC11304 similar to PIR|T04669|T04669 serine O-acetyltransferase ... 30 1.5
TC20194 weakly similar to UP|Q8LA49 (Q8LA49) Globulin-like prote... 30 2.0
AW719739 30 2.0
TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partia... 30 2.0
TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (E... 29 2.6
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 29 2.6
TC9623 homologue to UP|Q8H1K8 (Q8H1K8) Stromal ascorbate peroxid... 29 2.6
TC15245 29 3.4
>TC15463 similar to PIR|T01259|T01259 AMP deaminase homolog F16M14.21 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(4%)
Length = 665
Score = 43.9 bits (102), Expect = 1e-04
Identities = 17/21 (80%), Positives = 21/21 (99%)
Frame = +2
Query: 794 NGNDIHRTNVPHIRLEFRDTV 814
+GNDIH+TNVPHIRLEFR+T+
Sbjct: 2 DGNDIHKTNVPHIRLEFRETI 64
>AV781245
Length = 523
Score = 41.2 bits (95), Expect = 7e-04
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -3
Query: 793 PNGNDIHRTNVPHIRLEFRDTV 814
P+G DIH+TNVPH+RL FRDT+
Sbjct: 521 PDGYDIHQTNVPHLRLGFRDTI 456
>TC13827
Length = 517
Score = 34.3 bits (77), Expect = 0.081
Identities = 21/58 (36%), Positives = 29/58 (49%)
Frame = -3
Query: 17 SIVAVSAYYMHRKTLTELLEFARTVEPEGDSDGGERRRGGSKRRNGGGGGYRRGSGSL 74
SI + S +Y+ R+ + E EG+ DGGE R GG GGGG G+ S+
Sbjct: 293 SIRSKSFFYLQRQVAVLIFELR-----EGNGDGGECREGGFGGGGHGGGGGVAGNDSV 135
>BP042272
Length = 471
Score = 32.7 bits (73), Expect = 0.24
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 27/65 (41%)
Frame = +1
Query: 46 DSDGGERRRGGSK---------------------------RRNGGGGGYRRGSGSLPDVT 78
D DGG RR GGS+ RR GGG YRRG GS
Sbjct: 235 DRDGGSRRGGGSRDRRGGFKSSRGGWGGGRDSDDGFGDQYRRGGGGDQYRRGGGSSSSRN 414
Query: 79 AIAGG 83
+ GG
Sbjct: 415 SRTGG 429
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 32.0 bits (71), Expect = 0.40
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -1
Query: 42 EPEGDSDGGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNGLMHDEGIPVGLPR 101
E +G GG ++GG +GGGGGY G G G G G+ G P P
Sbjct: 215 EYQGRGRGGPSQQGGRGGYSGGGGGYGGGGG-----RGGGGMGSGRGVSPSHGGPPSRPP 51
Query: 102 LQTLRE 107
L +
Sbjct: 50 APELHQ 33
>BI420016
Length = 559
Score = 31.2 bits (69), Expect = 0.69
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 45 GDSDGGERRRGGSKRRNGGGGGYRRG 70
G G R GG + + GGGGG RRG
Sbjct: 484 GGRGRGRREEGGRRGQRGGGGGQRRG 407
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 30.8 bits (68), Expect = 0.90
Identities = 22/54 (40%), Positives = 25/54 (45%)
Frame = -2
Query: 41 VEPEGDSDGGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNGLMHDEG 94
VE G GG GG +NGGGGG G G P +T G +G G D G
Sbjct: 830 VEIGGLPGGGNN--GGKGGKNGGGGG-GGGGGVKPGITIGGKGNKGEGGCFDGG 678
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 30.8 bits (68), Expect = 0.90
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 45 GDSDGGERRRGGSKRRNGGGGGYRRGSG 72
G +GG GGS+ GGGGGY G G
Sbjct: 376 GRREGGYGGGGGSRGYGGGGGGYGGGGG 459
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 30.8 bits (68), Expect = 0.90
Identities = 20/53 (37%), Positives = 26/53 (48%)
Frame = -2
Query: 35 LEFARTVEPEGDSDGGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGN 87
+E R EG++ E G R GGGGG G + P+V AGGV G+
Sbjct: 396 VELDRRRRHEGETSAVEEHNEGKGRGGGGGGG---GKEAEPEV---AGGVHGD 256
>BU494118
Length = 222
Score = 30.4 bits (67), Expect = 1.2
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = -2
Query: 44 EGDSDGGERRRGGSKRRNGGGGGYRRGSG 72
EG+ D G G +R GGGGG R SG
Sbjct: 191 EGEEDSGGLEAGPRRRCGGGGGGGGRSSG 105
>BP030058
Length = 455
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +1
Query: 44 EGDSDGGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNG 88
EG GG GG GGGGG GSG GG EG+G
Sbjct: 286 EGYFGGGGEGGGGGGGDGGGGGGDGHGSG--------GGGGEGDG 396
>BP028844
Length = 179
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = -3
Query: 50 GERRRGGSKRRNGGGGGYRRGSGSLPDVTAI 80
GE G + RR GGGGG G+GSL + +
Sbjct: 150 GEYAMGATWRREGGGGGGVDGNGSLRETRCV 58
>TC11304 similar to PIR|T04669|T04669 serine O-acetyltransferase F8D20.150
- Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (24%)
Length = 775
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/60 (38%), Positives = 27/60 (44%), Gaps = 7/60 (11%)
Frame = -1
Query: 47 SDGGERRR----GG---SKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNGLMHDEGIPVGL 99
S GG RRR GG +R GGGGG RR + + GG G G + VGL
Sbjct: 493 SRGGRRRRE*GGGGRVQERRFGGGGGGGRRRRACWGERASYGGGSGGGGGGSHKPCEVGL 314
>TC20194 weakly similar to UP|Q8LA49 (Q8LA49) Globulin-like protein, partial
(7%)
Length = 491
Score = 29.6 bits (65), Expect = 2.0
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 5/88 (5%)
Frame = +3
Query: 684 SPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNP-----LPVFFLRGLNVSLSTDDPLQIH 738
+P +Q +Y G N L LD H +P FF+ + +
Sbjct: 54 NPAVQLIYIARGSGKIEIVGLNGKLALDSHVEAGHLLLVPKFFVVAQIAGEEGMESYTMV 233
Query: 739 LTKEPLVEEYSIAASVWKLSSCDLCEIA 766
TK+PL EE+S SVW S ++ E++
Sbjct: 234 TTKKPLFEEFSGKTSVWGSLSPEVQEVS 317
>AW719739
Length = 576
Score = 29.6 bits (65), Expect = 2.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 160 TNGNVGGEGKNPYETLPNHVNTNG-EQMAITASSMIRSHSISGDLHGVQPD 209
T + G +N +P+H++ + E + IR+HS GD+HG + D
Sbjct: 143 TLSTISGCSQNLCFFIPSHLHLSKLESQNFQCAQSIRNHSYPGDIHGSESD 295
>TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partial (8%)
Length = 638
Score = 29.6 bits (65), Expect = 2.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 160 TNGNVGGEGKNPYETLPNHVNTNG-EQMAITASSMIRSHSISGDLHGVQPD 209
T + G +N +P+H++ + E + IR+HS GD+HG + D
Sbjct: 119 TLSTISGCSQNLCFFIPSHLHLSKLESQNFQCAQSIRNHSYPGDIHGSESD 271
>TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (EP-C1)
{Phaseolus vulgaris;} , partial (29%)
Length = 472
Score = 29.3 bits (64), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +3
Query: 509 RISIYGRKQSEWDQLASWIVNNDLYSENVVW 539
R SIYGR+ W + SW N ++S N +W
Sbjct: 93 RGSIYGRRSGLWHSIESWSSNCGIWS-NSIW 182
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/44 (38%), Positives = 19/44 (42%)
Frame = +2
Query: 45 GDSDGGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNG 88
G +GG GGS+ GGGGGY G G EG G
Sbjct: 635 GRREGGYGGGGGSRYSGGGGGGYGGSGGG-----GYGGRREGGG 751
Score = 27.3 bits (59), Expect = 9.9
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +2
Query: 45 GDSDGGERRRGGSKRRNGGGGGY---RRGSG 72
G GG G RR GGGGGY R G G
Sbjct: 692 GGGYGGSGGGGYGGRREGGGGGYGGSREGGG 784
>TC9623 homologue to UP|Q8H1K8 (Q8H1K8) Stromal ascorbate peroxidase,
partial (42%)
Length = 640
Score = 29.3 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 20/46 (42%)
Frame = -3
Query: 49 GGERRRGGSKRRNGGGGGYRRGSGSLPDVTAIAGGVEGNGLMHDEG 94
G + GG+ R GGGG G+G + GG G G H G
Sbjct: 212 GAQALEGGTGRGGGGGGE*EEGTGGV*GGRE*EGGSGGGGRNHASG 75
>TC15245
Length = 531
Score = 28.9 bits (63), Expect = 3.4
Identities = 14/30 (46%), Positives = 16/30 (52%), Gaps = 4/30 (13%)
Frame = -2
Query: 275 STPKPNLEPFFYAP----EGKSDHYFEMQD 300
STP P PFFYAP +S H+F D
Sbjct: 293 STPWPRHHPFFYAPPVFKHRRSTHFFRNHD 204
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,823,345
Number of Sequences: 28460
Number of extensions: 200275
Number of successful extensions: 1593
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of query: 814
length of database: 4,897,600
effective HSP length: 98
effective length of query: 716
effective length of database: 2,108,520
effective search space: 1509700320
effective search space used: 1509700320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140721.5