TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140104.6 - phase: 0 
         (216 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform ...    28  1.6
AW719448                                                               28  1.6
AV426241                                                               27  2.1
BI420024                                                               27  2.7
TC10646 weakly similar to UP|AAS55083 (AAS55083) UDP-glucose glu...    27  2.7
TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, ...    27  2.7
AV422430                                                               27  2.7
TC7968 similar to UP|Q39360 (Q39360) (Clone PIS63-1), partial (15%)    27  2.7
BI417655                                                               27  3.6
AW719590                                                               25  7.9

>TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform 3  ,
            complete
          Length = 2779

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = +1

Query: 50   WEEIRDEYNKRANKNYTQKQLKNRMDTLRGEWTIWKQL 87
            W++I     +R ++ YT K   +R+ TL G +  WK +
Sbjct: 2281 WDKISQGGLQRIHEKYTWKIYSDRLLTLTGVYGFWKHV 2394


>AW719448 
          Length = 552

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 13/53 (24%), Positives = 25/53 (46%)
 Frame = +3

Query: 10  SSENLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKRAN 62
           SSE+ G  +W ++     L  C   +  CG +G+  + ++  E    Y K ++
Sbjct: 126 SSEDKGVGEWKSWGNSCSLHCCYPGVLNCGGVGVGRQCEQGSEGEAHYPKTSS 284


>AV426241 
          Length = 429

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (52%)
 Frame = -1

Query: 61  ANKNYTQKQLKNRMDTLRGEWTIWKQLLGKET 92
           AN+ + Q Q  + M     +WT+WK ++   T
Sbjct: 177 ANQQHIQNQFSHGMQLWT*QWTLWKDMILNRT 82


>BI420024 
          Length = 490

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 20/60 (33%), Positives = 27/60 (44%), Gaps = 8/60 (13%)
 Frame = +2

Query: 130 CDELEFIFGEIV--------ATSQCACAPAMGVPLESTGKNTTADVAREIIESDDELNID 181
           C +L F F +I+        AT+    APA G     TGKN   DV    +  DD + +D
Sbjct: 128 CKKLVFYFHDIIYNGHNAKNATAAIVGAPAWGNTTVLTGKNHFGDV----VVFDDPITMD 295


>TC10646 weakly similar to UP|AAS55083 (AAS55083) UDP-glucose
           glucosyltransferase, partial (8%)
          Length = 501

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 10/29 (34%), Positives = 16/29 (54%), Gaps = 4/29 (13%)
 Frame = -3

Query: 90  KETGLGWNHHIGNI----DADSAWWDAKI 114
           K+ G GWN H G++        AWW +++
Sbjct: 358 KKIGRGWNKHNGSVILMARQTQAWWQSEV 272


>TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, partial
           (29%)
          Length = 1104

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = +3

Query: 83  IWKQLLGKETGLGWNHHIGNIDADSAW 109
           +W     K T   +NH IGNI+  S+W
Sbjct: 453 VWWFSXWKNTCCSYNHDIGNINGCSSW 533


>AV422430 
          Length = 415

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 150 PAMGVPLESTG-KNTTADVAREIIESDDELNIDELSPMENTQSKNKRKVS 198
           P + +P E  G +++  D   E  +SDDE  +DEL P +        K+S
Sbjct: 266 PQLKLPEEQFGDEDSPDDDLDESSDSDDETELDELPPFKALTKAQVEKLS 415


>TC7968 similar to UP|Q39360 (Q39360) (Clone PIS63-1), partial (15%)
          Length = 1193

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 47  NKKWEEIRDEYNKRANKNYTQKQLKN 72
           N K+ E  ++YN R N+NY QK   N
Sbjct: 523 NTKFTEGGNKYNPRENQNYNQKFFYN 600


>BI417655 
          Length = 509

 Score = 26.6 bits (57), Expect = 3.6
 Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 3/36 (8%)
 Frame = +2

Query: 46  RNKKWEEIRDEYNKRANKN---YTQKQLKNRMDTLR 78
           + + WEE+    + RAN      TQ Q KN++++++
Sbjct: 224 KGQDWEEVAKHVSSRANNTKSPKTQTQCKNKIESMK 331


>AW719590 
          Length = 496

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
 Frame = -1

Query: 96  WNHH----IGNIDADSAWWDAK 113
           WNH     I NID   A+WD K
Sbjct: 199 WNHEPPHFISNIDCKMAFWDLK 134


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,577,003
Number of Sequences: 28460
Number of extensions: 45244
Number of successful extensions: 243
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of query: 216
length of database: 4,897,600
effective HSP length: 86
effective length of query: 130
effective length of database: 2,450,040
effective search space: 318505200
effective search space used: 318505200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)