BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140027.12 + phase: 0 /pseudo
(526 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423990 45 2e-05
TC8147 similar to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrier... 30 0.97
BP033723 30 0.97
TC8396 homologue to UP|Q84UT1 (Q84UT1) ADP-glucose pyrophosphory... 30 1.3
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 30 1.3
BP048895 29 2.2
BP042198 28 2.8
TC8332 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich prot... 28 2.8
TC16003 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri... 28 3.7
TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter ... 28 3.7
BP064595 27 6.3
TC9278 27 6.3
TC14260 weakly similar to UP|AAR24673 (AAR24673) At5g62200, part... 27 6.3
BP056084 27 6.3
TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription facto... 27 6.3
TC15114 27 8.2
>AV423990
Length = 220
Score = 45.4 bits (106), Expect = 2e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 10 LKPLFHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYINGLQQTITG 64
L L HL + + + + + + D+T ALCP Q CS AIY+ G QQ + G
Sbjct: 55 LTGLSHLFVTMFLTGFGGVIAIPAITDITMAALCPGQDECSLAIYLTGFQQAMIG 219
>TC8147 similar to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein
of acetyl-CoA carboxylase, chloroplast precursor (BCCP)
, partial (42%)
Length = 731
Score = 30.0 bits (66), Expect = 0.97
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = +3
Query: 275 TGIHSVLLQIFSLLCHYYLTNFF**IP*YNRQSHNSYAVLFESCFWF 321
T S LL F L+ H+Y+ F**I + + S V+F SC F
Sbjct: 447 TAEKSYLLLFFFLIFHFYMIGMF**IFFWFQLSRKLMCVIFISCLLF 587
>BP033723
Length = 489
Score = 30.0 bits (66), Expect = 0.97
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -3
Query: 120 SHIISQGSIFCISVAYVADVVHESKRVAVF-SWITGLSSAAHVIANVFARFLPQNYIF 176
S + S G I CI++ +AD+VH+ + F S +T L+S + ++ +F + + Y+F
Sbjct: 175 SSLQSTGGILCINLGALADLVHQYMFLCPFQSCLTLLTSPSQPVSCLFWKHVFLFYLF 2
>TC8396 homologue to UP|Q84UT1 (Q84UT1) ADP-glucose pyrophosphorylase small
subunit PvAGPS1 , partial (67%)
Length = 1223
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -1
Query: 442 ATYGIISKASSSTNQGKAQTFIAGANSISGLLSPIVMSPLTSLFLSSDAPFEC----KGF 497
A GI SSS + TFIA S G + ++ P +S+F+ +A C K
Sbjct: 989 AIKGISFALSSSRPKMVVSTFIAFNCSPFGFSANSIIRPSSSIFIRPNAVARCSSIGKAA 810
Query: 498 SIICASVCMVSYLFLS 513
++I ASV + +++ S
Sbjct: 809 TVISASVSLCAWINFS 762
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Frame = +1
Query: 365 ALLASIAYAWLSGLAWAPWVSKIV----TFYINL---IQIYMFIWLAENFITYISIMKVI 417
A L ++ WL+G+ W K+ + Y+ L I IW+ I YI +
Sbjct: 502 ATLGALTVEWLTGITWQD-AGKVELVEGSSYLGLPLPFSITALIWIEVLVIGYIEFQRNA 678
Query: 418 EFNPLWQVPYLGGSF----GIIYILEKPAT 443
E +P ++ Y GGSF G+ EK AT
Sbjct: 679 ELDPEKRL-YPGGSFFDPLGLAADPEKKAT 765
>BP048895
Length = 449
Score = 28.9 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 505 CMVSYLFLSPIHHLVVFFFF 524
C+ SY+F I+HL FFFF
Sbjct: 113 CIYSYIFTYTINHLFFFFFF 172
>BP042198
Length = 481
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 354 PLVGEKVILCSALLASIAYAWLSGLAWAPWVSKIVTFYINLIQIYMFIWLA-ENFITY 410
P++ +V++ L AWL GL W + F+ N ++ W + N++ Y
Sbjct: 178 PMIRVQVLISG--LRVFCVAWLFGLLWLYEARRFAIFFCNFFFVFFLCWHSLNNYLFY 11
>TC8332 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (10%)
Length = 689
Score = 28.5 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +2
Query: 499 IICASV-CMVSYLFLSPIHHLVVFFFFM 525
I+C + C S +FL IHHL+ F FF+
Sbjct: 503 IVCKCLGCEDSLVFLQNIHHLLFFLFFI 586
>TC16003 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
factor 17 (WRKY DNA-binding protein 17), partial (20%)
Length = 446
Score = 28.1 bits (61), Expect = 3.7
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +3
Query: 4 WS---GFFELKPLFHLLLPLSIHWIAEAMTVSVLVDVTTTA---LCPQQSSCSKAIYING 57
WS GF LKPL LLL L + + +T +VL+ +T TA L S SK+
Sbjct: 96 WSISFGFSLLKPLLFLLLLLLL--LLPPITATVLISITLTAPKSLTSLSQSSSKSSIC*T 269
Query: 58 LQQTITGIFKMAVLPLLGQLSDEHGRKPLLLLTISTSI 95
+ T + K LPLL LLLL +S ++
Sbjct: 270 VPATRASV-KRRRLPLL-----------LLLLCLSLNL 347
>TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter - like
protein (UDP-galactose transporter-like protein),
partial (98%)
Length = 768
Score = 28.1 bits (61), Expect = 3.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 45 QQSSCSKAIYINGLQQTITGIFKMA--VLPLLGQLSDEHGRKPLLLLTISTSIIPFALLA 102
Q S CS + I+ ++ + + + LLG+ D H P+L + PF+ +
Sbjct: 416 QLSLCSYLVSISPSPSSLAQLLYLLHFICTLLGRCKDNHDFAPILTTHFCKDLFPFSFI- 592
Query: 103 WNQSKEFVYAYYV 115
S E++ YV
Sbjct: 593 ---SMEYILKLYV 622
>BP064595
Length = 474
Score = 27.3 bits (59), Expect = 6.3
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 472 LLSPIVMSPLTSLFLSSDAPFECKGFS-IICASVCMVSYLFLSPIHHLVVFFF 523
LLSP+ +S LTS L+S P FS + +S+C LF S +L FF
Sbjct: 323 LLSPLSISLLTSYPLASSPPLTLPPFSPPLASSICS---LFCSDNENLNASFF 472
>TC9278
Length = 743
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +1
Query: 361 ILCSALLAS-IAYAWLSGLAWAPWVSKIVTFYINLIQI-----YMFIWLAENFITYISIM 414
I C L +S + + L G++ WVS ++ INLI +F+ L E+ Y+ +M
Sbjct: 349 IYCFLLPSSFLVFLLLMGVSIEAWVSVLLFNIINLIAALSEK*LLFLSLCESLRVYVPLM 528
Query: 415 K 415
K
Sbjct: 529 K 531
>TC14260 weakly similar to UP|AAR24673 (AAR24673) At5g62200, partial (51%)
Length = 788
Score = 27.3 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -2
Query: 384 VSKIVTFYINLIQIYMFIWLAENFIT 409
+S +TF I I IY++I+L +F+T
Sbjct: 694 ISSYITFIIIYIYIYIYIYLFSSFLT 617
>BP056084
Length = 522
Score = 27.3 bits (59), Expect = 6.3
Identities = 13/42 (30%), Positives = 24/42 (56%)
Frame = -3
Query: 14 FHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYI 55
FH++ S+H + + S+L VTT +C Q +C K +++
Sbjct: 172 FHIIC--SVHGAGASTSYSLLEQVTTVLICIQ*CTCLK*LHV 53
>TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (62%)
Length = 1585
Score = 27.3 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +1
Query: 12 PLFHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYI 55
P LL PLS+ + + + + + T+ LC Q+ CS IY+
Sbjct: 952 PTVQLLEPLSLSQVMGSSSTH*VCPI*TSRLCLLQTCCSVEIYL 1083
>TC15114
Length = 464
Score = 26.9 bits (58), Expect = 8.2
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = +3
Query: 320 WFQQKSVLRTSDDGRNWFHLFSARFQIVLLPILNPLVGEKVILCSALL 367
W+ Q SV DGR ++ S +FQI+ LP+ V + LCS ++
Sbjct: 90 WYDQISV-----DGRIFW---SCKFQIMCLPLWENAVSSFLGLCSGMI 209
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.339 0.147 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,030,073
Number of Sequences: 28460
Number of extensions: 175661
Number of successful extensions: 1610
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of query: 526
length of database: 4,897,600
effective HSP length: 94
effective length of query: 432
effective length of database: 2,222,360
effective search space: 960059520
effective search space used: 960059520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140027.12