BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140023.16 - phase: 0
(1060 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065920 114 1e-25
AV778226 61 1e-09
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 36 0.028
BP070484 33 0.31
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ... 32 0.69
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 32 0.69
BP067210 30 1.5
TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine ... 30 2.0
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 29 4.4
TC12274 similar to PIR|G88642|G88642 protein C54E4.4 [imported] ... 29 4.4
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 28 5.8
BP078454 28 5.8
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 28 5.8
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p... 28 5.8
BP039096 28 7.6
TC8419 homologue to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial ... 28 7.6
TC14329 weakly similar to UP|Q8LFK0 (Q8LFK0) Beta-N-acetylhexosa... 28 9.9
TC12816 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin l... 28 9.9
TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein (... 28 9.9
AV426492 28 9.9
>BP065920
Length = 509
Score = 114 bits (284), Expect = 1e-25
Identities = 55/68 (80%), Positives = 59/68 (85%)
Frame = -1
Query: 992 LADFVGAFNDSWLFQCKFPDGVVEETIASFASMPHTSSALALWLVKLDAIIAPYLDRVQT 1051
L DFVGA ++SWLFQC+FPDG+VEE IASFASMPHTSSALALWLVKLD IIAPYLDRV
Sbjct: 509 LTDFVGAIHESWLFQCQFPDGMVEEIIASFASMPHTSSALALWLVKLDTIIAPYLDRVYL 330
Query: 1052 QKSQGIGK 1059
QK Q I K
Sbjct: 329 QKKQ*ISK 306
>AV778226
Length = 523
Score = 60.8 bits (146), Expect = 1e-09
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 36/146 (24%)
Frame = +2
Query: 311 LVKFPPGDVKMKKPIHLQPWDSSPELVKKLFK---------------------------- 342
+V FPP VK+KKP +Q W +S + V L
Sbjct: 47 MVCFPPTSVKLKKPFAVQAWSNSEQNVGNLLMAWRFLITFADVLELWPFTLDEFVQAFHD 226
Query: 343 -DSMLLGQIHVALLTLLLSDIEVEL---SNGFCPHLNKSCN----FLALLHSVENQEYSL 394
DS LG++HVALL +++ DIE S G + N + N ++ + +
Sbjct: 227 YDSRWLGEVHVALLKVIIKDIEDVARTPSTGLGTNQNGAANPGGGHPEIVEGAYAWGFDI 406
Query: 395 DAWRRSLNPLTWIEILRQVLVAAGFG 420
W+++LN TW EI RQ+ ++AGFG
Sbjct: 407 RNWQKNLNQWTWPEIFRQLALSAGFG 484
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 36.2 bits (82), Expect = 0.028
Identities = 36/104 (34%), Positives = 48/104 (45%), Gaps = 11/104 (10%)
Frame = +3
Query: 492 YSTLSSDITLFEKISSSAYRLRMSTVAKD---DDDSQSDTEDSGSVDDELNDSD------ 542
+S+ SSD + E S S R K D S+SD+ DS S DE++
Sbjct: 549 WSSESSDFSGDESESRSEEERRRKRKQKKKLRDQVSRSDSSDSDSSADEVSKRKRQHKRH 728
Query: 543 --TCSSGDDFGSGSIHSNIRKLRRHNSRKAKHNKLKVYTEIDES 584
T SSG DF S +S +RK R H KH+K ++E ES
Sbjct: 729 RVTKSSGSDFSSDEENSPVRK-RSH----GKHHKRHRHSESSES 845
>BP070484
Length = 387
Score = 32.7 bits (73), Expect = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 443 LCPGTLKCELFKILSERGNNGCKVSELAKSMQIA 476
L PGT+K F +LS G+ G V ELA+ +Q++
Sbjct: 112 LTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQVS 213
>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
Length = 1127
Score = 31.6 bits (70), Expect = 0.69
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -2
Query: 725 IDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSM 784
+ P R S E G+W VI T +LCA L+ G R L+I ++E ++ C+++
Sbjct: 223 VKTPSGVRSTLASLESGNWTVI*TLSSLCAHLT----SG*RLELMIGTIEEKRRGWCKTL 56
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 31.6 bits (70), Expect = 0.69
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 EELESLIYSTLSSDITLFEKI--------SSSAYRLRMSTVAKDDDDSQSDTEDSGSVDD 536
EEL++L+ T+ +KI + A + + +DD+D D ++ D+
Sbjct: 650 EELQNLMEHDYDIGSTIRDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDE 829
Query: 537 ELNDSDTCSSGDDFGSGSIHS 557
E D D D+ G G S
Sbjct: 830 EEEDDDDDDEDDEEGEGKSKS 892
>BP067210
Length = 473
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Frame = +2
Query: 77 LPSGPKNYNSACQQDQEPVKRRKASKSAIQS---------HPNCNMKAPVERHGMGKGLA 127
LP N NS +R K S S I P+CN+ + +
Sbjct: 203 LPINMNNMNSPIPSQHLTNRRNKLSLSVITDLSILXPKAQQPHCNLNYKLYLENATRKHV 382
Query: 128 TNPNCKMKAPVKRH 141
+NP + KAP ++H
Sbjct: 383 SNPRARPKAPARKH 424
>TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine P1
{Caenolestes fuliginosus;} , partial (49%)
Length = 1266
Score = 30.0 bits (66), Expect = 2.0
Identities = 25/101 (24%), Positives = 46/101 (44%), Gaps = 10/101 (9%)
Frame = +1
Query: 514 MSTVAKDDDDSQSDTEDSGSVDDELNDSDT----CSSGDDFGSGSIHSNIRKLR------ 563
+ +++ DDD + D G VDD +D DT S DD S S S+ +L
Sbjct: 301 LPSISLFDDDFSDISSDDGDVDDLEDDDDTGNDSSSEFDDEPSASASSSFLRLDDFFFRV 480
Query: 564 RHNSRKAKHNKLKVYTEIDESHAGEVWLLGLMDSEYSDLKI 604
R ++ + ++ ++ T G+++ L + S S +K+
Sbjct: 481 RGTAQNDESSRSQIDTRHRSCSIGDIFSLAELASSDSVVKL 603
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 28.9 bits (63), Expect = 4.4
Identities = 14/47 (29%), Positives = 21/47 (43%)
Frame = +2
Query: 508 SAYRLRMSTVAKDDDDSQSDTEDSGSVDDELNDSDTCSSGDDFGSGS 554
S ++ S DDDD D +D DD+ +D D D +G+
Sbjct: 50 SGFKRLFSPKPDDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTGT 190
>TC12274 similar to PIR|G88642|G88642 protein C54E4.4 [imported] -
Caenorhabditis elegans {Caenorhabditis elegans;} ,
partial (11%)
Length = 589
Score = 28.9 bits (63), Expect = 4.4
Identities = 24/108 (22%), Positives = 48/108 (44%)
Frame = +3
Query: 482 STTEELESLIYSTLSSDITLFEKISSSAYRLRMSTVAKDDDDSQSDTEDSGSVDDELNDS 541
S + L S + + LSS ++L ++ V +DDD+ ++++ + +D+ S
Sbjct: 114 SIDDALSSALANFLSSSLSLESPKNTDTLPYEAPEVLNEDDDNH-ESDEVIAKNDKYGKS 290
Query: 542 DTCSSGDDFGSGSIHSNIRKLRRHNSRKAKHNKLKVYTEIDESHAGEV 589
D SS ++ S + N + + H +TE+ + A EV
Sbjct: 291 DVLSSDVNYISNELLDN----QTPSGLNITHEGSAAWTELTSASATEV 422
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 28.5 bits (62), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 519 KDDDDSQSDTEDSGSVDDELNDSDTCSSGDD 549
++DDD + D ED DD+ +D D DD
Sbjct: 258 EEDDDEEEDDEDEDDDDDDDDDDDGEEEEDD 350
>BP078454
Length = 385
Score = 28.5 bits (62), Expect = 5.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 520 DDDDSQSDT-EDSGSVDDELNDSDTCSSGDDFGSGSIHSNIRK-LRRHNSRKAKHNK 574
+ DD++S + +D S D D D+ SSG + GS RK R+ N +K K K
Sbjct: 362 EGDDAESQSDQDEDSATDPEEDGDS-SSGSETGSPVDKKAARKEARKENKKKVKEEK 195
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 28.5 bits (62), Expect = 5.8
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +3
Query: 478 LNLSSTTEELESLIYSTLSSDITLFEKISSSAYRLRMSTVAKDDDDSQSDTEDSGSVDDE 537
++ SS E LE ++ + + TL +K + KDDD ++D ++ DDE
Sbjct: 117 VDASSEAEALEQVLSA---EETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDDDE 287
Query: 538 LNDSDTCSSGDDFGS 552
+D + + G GS
Sbjct: 288 DDDKEDGALGGSEGS 332
>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial (85%)
Length = 1917
Score = 28.5 bits (62), Expect = 5.8
Identities = 19/68 (27%), Positives = 34/68 (49%)
Frame = -3
Query: 617 LLSSGSSIRMKDPVKVTADCSSSIQLRGSGAKIKRSVNPIEQMQCTKEVHMNSHACPVDS 676
L+SS +S+ ++D + C S ++ +G + +EQ+Q VH+ HAC S
Sbjct: 1648 LISSTASLLLRD-IPEDIHCLSHLRFQG--------LW*LEQVQNFSLVHLQQHACHFGS 1496
Query: 677 SLLVSKFH 684
+ + FH
Sbjct: 1495 VIRLQLFH 1472
>BP039096
Length = 492
Score = 28.1 bits (61), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 361 DIEVELSNGFCPHLNKSCNFLALLHS 386
D+ +E G CP K+CN A LHS
Sbjct: 230 DMSIEEVAGSCPFCRKNCNCNACLHS 307
>TC8419 homologue to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial (15%)
Length = 942
Score = 28.1 bits (61), Expect = 7.6
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = +1
Query: 460 GNNGCKVSELAKSMQIAELNLSSTTEELE--SLIYSTLSSDITLFEKISSSAYRLRMSTV 517
G + K+ EL + + N+ E ++ S + S L+ +++ + +S+A S+
Sbjct: 7 GQSTAKIEELL----LEDQNVKRRRERIQKQSSLLSKLTRQLSIHDNRASAA-----SSW 159
Query: 518 AKDDDDSQSDTEDSGSVDDELNDSDTCSSGDDFGSGSIHSNIRKLRRHNSRKAKH 572
+ +S S SG DD + D ++G SGS S RHNS A++
Sbjct: 160 SNGSAES-SPRSSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQN 321
>TC14329 weakly similar to UP|Q8LFK0 (Q8LFK0)
Beta-N-acetylhexosaminidase-like protein, partial (6%)
Length = 670
Score = 27.7 bits (60), Expect = 9.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 865 SFYLDLNVVKYGRRSYLDSLARCRSCHDL---YWRDERHCKICHMTFELDF 912
+F+L + V++ + SY+ SLA R C + +WR E + IC + L +
Sbjct: 503 TFFLRI*NVRF*QNSYMGSLAIFRKCTCIQ*QHWRCEYNVIICSLL*SLSY 655
>TC12816 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin like protein),
partial (14%)
Length = 419
Score = 27.7 bits (60), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 1032 ALWLVKLDAIIAPYLDRVQTQKSQGI 1057
A+W V ++A I PY D V K G+
Sbjct: 41 AVWGVNMEACITPYSDHVNRAKGSGL 118
>TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein
(At2g21180/F26H11.6), partial (66%)
Length = 824
Score = 27.7 bits (60), Expect = 9.9
Identities = 20/86 (23%), Positives = 38/86 (43%), Gaps = 5/86 (5%)
Frame = -1
Query: 72 SEFDSLPSGPKNYNSACQQDQEPVKRRKASKSAIQSHPNCN----MKAPVER-HGMGKGL 126
S S+ + + + +D + K + A ++HPNC+ + ER H + + +
Sbjct: 416 SRAHSMETNQRTNLCSSMEDSQRTKSISTTGVANRTHPNCS*AVSTTSSYERYHDIPRKM 237
Query: 127 ATNPNCKMKAPVKRHGMGKGLATNPN 152
K+ A + R G G+G NP+
Sbjct: 236 ------KISAKINRTGYGRGFRVNPS 177
>AV426492
Length = 431
Score = 27.7 bits (60), Expect = 9.9
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +3
Query: 54 TTGDIVNTVLLNDAPTLGSEFDSLPSGPKNYNSACQQDQEPVKRRKASKSAIQSHPNCNM 113
T+ +T L TLGS S P+ +N + RRK+ + PNC+
Sbjct: 153 TSSTSTSTSLFRATTTLGSAGGSNPNSTQNLHITSTWQIRRPNRRKSILNGKSRDPNCHG 332
Query: 114 KAPVERHG 121
+ HG
Sbjct: 333 IHDLPHHG 356
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,400,201
Number of Sequences: 28460
Number of extensions: 281210
Number of successful extensions: 1426
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of query: 1060
length of database: 4,897,600
effective HSP length: 100
effective length of query: 960
effective length of database: 2,051,600
effective search space: 1969536000
effective search space used: 1969536000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140023.16