TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140022.1 + phase: 0 /pseudo
         (583 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia...    54  5e-08
TC8525 similar to UP|MDHP_PEA (P21528) Malate dehydrogenase [NAD...    32  0.37

>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
          Length = 739

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -2

Query: 316 RRSMQVIF*RNLRWSIQSQFPRRLK-KS*S*QEKAMVKG*TQLITKV*LEV*DI*LQQGQ 374
           R+ M +IF*RN R  IQS FP+ L  K      +   +G  QLITKV*L V*DI*+Q  Q
Sbjct: 738 RKYMLMIF*RNSR*QIQSTFPQLLXGKKLKLAGEMEARGLIQLITKV*LGV*DI*IQ*DQ 559

Query: 375 I*YMELVYLANTWRIRVLVTCKEPRGFFVILKVL*PKEF 413
           I*++E     ++W   ++++ KE R    I KVL*  E+
Sbjct: 558 I*FVE*DCALDSWSHEIVIS-KEHRDLSDISKVL*RMEY 445


>TC8525 similar to UP|MDHP_PEA (P21528) Malate dehydrogenase [NADP],
           chloroplast precursor  (NADP-MDH) , partial (38%)
          Length = 963

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 15/32 (46%), Positives = 22/32 (67%)
 Frame = -3

Query: 230 LILILFKTVFRDVHSSTHSTSNSLILEMFLLC 261
           L+L+L KT     H++ +STS S+IL  +LLC
Sbjct: 634 LVLLLSKTFVALFHNNHYSTSISVILSQYLLC 539


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.164    0.579 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,646,895
Number of Sequences: 28460
Number of extensions: 130203
Number of successful extensions: 1752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 1091
length of query: 583
length of database: 4,897,600
effective HSP length: 95
effective length of query: 488
effective length of database: 2,193,900
effective search space: 1070623200
effective search space used: 1070623200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 58 (26.9 bits)