TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139709.19 + phase: 0 
         (353 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16445 UP|AAQ67339 (AAQ67339) Photosystem II thylakoid membrane...   717  0.0
TC14174 UP|PSBC_LOTJA (Q9BBT1) Photosystem II 44 kDa reaction ce...   163  4e-41
TC14683 homologue to GB|AAA84544.1|343028|PEACPHD psbA peptide {...    38  0.003
BP032478                                                               30  0.47
TC8387 similar to UP|BCA2_ARATH (Q9M439) Branched-chain amino ac...    29  1.0
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-...    27  4.0
TC9737 similar to UP|Q9LRT1 (Q9LRT1) Receptor protein kinase, pa...    26  8.8

>TC16445 UP|AAQ67339 (AAQ67339) Photosystem II thylakoid membrane protein,
           complete
          Length = 1162

 Score =  717 bits (1852), Expect = 0.0
 Identities = 351/353 (99%), Positives = 352/353 (99%)
 Frame = +2

Query: 1   MTAILERRDSENLWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERR+SENLW RFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 56  MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 235

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 236 DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 415

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 416 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 595

Query: 181 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240
           NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 596 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 775

Query: 241 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300
           QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
Sbjct: 776 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 955

Query: 301 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING 353
           NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING
Sbjct: 956 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING 1114


>TC14174 UP|PSBC_LOTJA (Q9BBT1) Photosystem II 44 kDa reaction center
           protein (P6 protein) (CP43), complete
          Length = 3406

 Score =  163 bits (413), Expect = 4e-41
 Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 3/298 (1%)
 Frame = +3

Query: 8   RDSENLWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
           +D  +L+    +W+   +  +++GW G+L+ P    A   +             G+    
Sbjct: 531 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 695

Query: 68  SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
           + S L G N ++ A+   + ++      +W   +  +   W   GG +  + LH   G+ 
Sbjct: 696 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 875

Query: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
            +M R++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F F++
Sbjct: 876 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 1055

Query: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
            FQ  HN  ++PFHM+GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EE
Sbjct: 1056FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 1232

Query: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
           TY++V A+ ++ ++     +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 1233TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 1400


>TC14683 homologue to GB|AAA84544.1|343028|PEACPHD psbA peptide {Pisum
           sativum;} , partial (67%)
          Length = 619

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 335 NAHNFPLDLAAVEAPSING 353
           +AHN PLDLAAVEAPSING
Sbjct: 212 DAHNSPLDLAAVEAPSING 268


>BP032478 
          Length = 509

 Score = 30.4 bits (67), Expect = 0.47
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 225 RETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAA 277
           RETT+ ES  +  +  +E + +N    +GY   L   Y    +SR LH F+++
Sbjct: 433 RETTQEES*QKWIQEEEEIKGFNWTTVYGYVRSLCGCYNDLLSSRCLHNFVSS 275


>TC8387 similar to UP|BCA2_ARATH (Q9M439) Branched-chain amino acid
            aminotransferase 2, chloroplast precursor  (Atbcat-2) ,
            partial (84%)
          Length = 1883

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 13/21 (61%), Positives = 15/21 (70%)
 Frame = +3

Query: 32   WFGVLMIPTLLTATSVFIIAF 52
            WF  LMI TLLTATSV+   +
Sbjct: 1704 WFDGLMISTLLTATSVYFCIY 1766


>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
           protein TSDC, partial (11%)
          Length = 494

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 246 YNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTM 293
           Y ++A   +  +L   +A F N    +F + AW V   WF  L +  +
Sbjct: 175 YALLARRPFRTKLTSIFALFQNPFQNYFHVQAWHVHNFWFDCLHLXVI 32


>TC9737 similar to UP|Q9LRT1 (Q9LRT1) Receptor protein kinase, partial
           (11%)
          Length = 563

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 13  LWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP 56
           LW ++C +  S++++   GW     +   L    +FI   I  P
Sbjct: 279 LWQKWCKFFRSSKHQFLKGWMRHASLFN*LQVQKIFITVEIVIP 410


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,596,265
Number of Sequences: 28460
Number of extensions: 93304
Number of successful extensions: 581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of query: 353
length of database: 4,897,600
effective HSP length: 91
effective length of query: 262
effective length of database: 2,307,740
effective search space: 604627880
effective search space used: 604627880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)