BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.7 + phase: 1 /pseudo
(478 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071273 69 2e-12
TC18819 32 0.17
BI420505 31 0.39
AV408916 28 2.5
BP050522 27 7.3
BP039044 27 9.6
TC15618 27 9.6
TC14101 homologue to UP|Q39640 (Q39640) Glycolate oxidase , com... 27 9.6
TC12137 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partia... 27 9.6
TC11484 similar to PIR|JC5965|JC5965 cytochrome P450 CYP86A1 - A... 27 9.6
TC8315 similar to UP|Q949G4 (Q949G4) N3 like protein, partial (16%) 27 9.6
>BP071273
Length = 133
Score = 68.6 bits (166), Expect = 2e-12
Identities = 33/43 (76%), Positives = 35/43 (80%)
Frame = +3
Query: 351 EVQTARVLLYLRVIPTLIECLRGPVFGDMVAPTMFLYMEHPNG 393
EVQTARVL YLRVIPT IE L VF + +APTMFLYMEHPNG
Sbjct: 3 EVQTARVLFYLRVIPTFIEFLPSLVFSNAIAPTMFLYMEHPNG 131
>TC18819
Length = 571
Score = 32.3 bits (72), Expect = 0.17
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 126 CVTLGMTRTISFSSHSSLFVCLGLSLLTRILPLPRLYESVFELSPSSGGLK 176
C+ + T T S + C G++++ R +P ++ V + PSSGGLK
Sbjct: 469 CLDVCWTHTPKHVSREAP*CCYGVNMMLRTT*IPNMH*LVSSMQPSSGGLK 317
>BI420505
Length = 474
Score = 31.2 bits (69), Expect = 0.39
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Frame = +2
Query: 13 WWASRSCCSWTYGSLFV*LGCVEFDQFQ---------IFGQSGCFCES 51
WW + C W G+ FV GC FD F + G GC CE+
Sbjct: 14 WWGNCWDCDWVCGAAFV--GCFCFDSFVQEQEW*ED*VCG*CGC*CEA 151
>AV408916
Length = 427
Score = 28.5 bits (62), Expect = 2.5
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +3
Query: 11 G*WWASRSCCSW 22
G WWA+ CCSW
Sbjct: 300 GRWWATEECCSW 335
>BP050522
Length = 562
Score = 26.9 bits (58), Expect = 7.3
Identities = 8/18 (44%), Positives = 15/18 (82%)
Frame = +2
Query: 459 FYCIHSLVEKANQLCSEV 476
+Y IH++++K N LCS++
Sbjct: 167 YYQIHNIIDKQNYLCSQI 220
>BP039044
Length = 442
Score = 26.6 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 216 NLIWEYYRDIYFGHRKVVMDL---KGKEDELLTNFEKTAE 252
+L W+YY Y + M +G D+++TNF KTA+
Sbjct: 190 SLEWDYY--YYLSDPVIEMSSFVKRGSVDDIITNFPKTAD 77
>TC15618
Length = 720
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 2 GLFVWNLGKG*WWASRSCCSWTYG 25
GLF KG W A CC W G
Sbjct: 301 GLFFNQ*AKGSWLAENLCCRWCLG 372
>TC14101 homologue to UP|Q39640 (Q39640) Glycolate oxidase , complete
Length = 1680
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 379 MVAPTMFLYMEHPNGKVARA 398
M+APT F M HP G+ A A
Sbjct: 519 MIAPTAFQKMAHPEGEYATA 578
>TC12137 similar to UP|Q8L7W3 (Q8L7W3) At2g29210/F16P2.41, partial (9%)
Length = 579
Score = 26.6 bits (57), Expect = 9.6
Identities = 22/69 (31%), Positives = 35/69 (49%)
Frame = -2
Query: 100 LVSDLVSRTLRFRNLGNDLQDRVLLQCVTLGMTRTISFSSHSSLFVCLGLSLLTRILPLP 159
+++ +V +L F + N V+ + L + T F S SSLF L LLT++L LP
Sbjct: 236 IITGMVIHSLSFLII*N-----VVCFTLQLQLLCTTFFPSVSSLFTASTLLLLTQLLLLP 72
Query: 160 RLYESVFEL 168
L +F +
Sbjct: 71 FLPLGLFPI 45
>TC11484 similar to PIR|JC5965|JC5965 cytochrome P450 CYP86A1 - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (43%)
Length = 752
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/64 (23%), Positives = 29/64 (44%)
Frame = -3
Query: 374 PVFGDMVAPTMFLYMEHPNGKVARASHSVFTAFISMGKESEKIDSLIEGEARFLSLSIII 433
PVF V P E P+G++ R S ++ ++ E + ++EG S +++
Sbjct: 516 PVFDGPVHPPGHGLAERPSGELERGSFALDKPGFAVAVEDSVAEEVVEGGLPPGSFRVVV 337
Query: 434 LPNT 437
P +
Sbjct: 336 KPRS 325
>TC8315 similar to UP|Q949G4 (Q949G4) N3 like protein, partial (16%)
Length = 674
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 432 IILPNTLGMASGVVGMVRHL 451
I LPNTLG G++ MV +L
Sbjct: 32 IALPNTLGFVFGIIQMVMYL 91
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,336,854
Number of Sequences: 28460
Number of extensions: 117349
Number of successful extensions: 785
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of query: 478
length of database: 4,897,600
effective HSP length: 94
effective length of query: 384
effective length of database: 2,222,360
effective search space: 853386240
effective search space used: 853386240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC139344.7