BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.5 + phase: 0
(250 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan pro... 364 e-102
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 183 2e-47
TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan prot... 141 9e-35
TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-li... 139 5e-34
TC15809 weakly similar to PIR|JN0747|JN0747 histone H1-I - Volvo... 103 3e-23
TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like arabinogalac... 97 3e-21
AV413145 89 7e-19
TC14679 similar to UP|FLA7_ARATH (Q9SJ81) Fasciclin-like arabino... 88 2e-18
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like... 87 4e-18
AV771016 86 8e-18
TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellu... 84 2e-17
TC14342 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan pro... 83 5e-17
TC13019 82 9e-17
TC14428 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan pro... 81 1e-16
AI967375 78 2e-15
TC14429 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan pro... 64 2e-11
TC17034 59 8e-10
TC14341 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabino... 47 4e-06
AV768218 42 1e-04
TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored p... 38 0.002
>TC14324 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan protein-like,
partial (63%)
Length = 1172
Score = 364 bits (935), Expect = e-102
Identities = 192/249 (77%), Positives = 219/249 (87%), Gaps = 1/249 (0%)
Frame = +3
Query: 2 VMMKHPFLSFTLL-LIVFFSSTTTLAQKSPAPAPSTDTAPTDIIRILKKAGGFTTLIRLL 60
V+MKH + LL L+ FF STTTLA SPAPAPS+ +PTDIIRILKKAGG+TTLIRLL
Sbjct: 96 VIMKHQLFTLPLLALMFFFHSTTTLAASSPAPAPSS--SPTDIIRILKKAGGYTTLIRLL 269
Query: 61 QTTQVSTQINSQLLNSNGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVS 120
QTTQV+TQIN+QL+NSN GLT FAPNDN+FS+LKPGFLNSL+D+QKN+LIQFHLLPTFVS
Sbjct: 270 QTTQVATQINAQLINSNAGLTFFAPNDNAFSNLKPGFLNSLNDQQKNELIQFHLLPTFVS 449
Query: 121 MSNFDTLSNPVRTQAGDDPYRLGLNVTSSGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVD 180
MSNFDTLSNPVRTQAG++P RL LNVTSSGN VNMTTGIVNVTVGG+VY+D+QLAVYQVD
Sbjct: 450 MSNFDTLSNPVRTQAGENPDRLALNVTSSGNTVNMTTGIVNVTVGGSVYSDNQLAVYQVD 629
Query: 181 KVLLPRDFFVAKPPAPAPAPEKTKSSKKKSSDSDGGVAGDDDSGAVNVKQRRLMLVPVAV 240
KVLLPRDFFVAKPPAPAPAPEK K+SKKKS+D G AG DDS AV+VKQ RL+ P+ V
Sbjct: 630 KVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEGPAG-DDSAAVSVKQ-RLVWGPLPV 803
Query: 241 ATIIVAIYS 249
A ++VA +S
Sbjct: 804 AMVVVAAFS 830
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 183 bits (465), Expect = 2e-47
Identities = 104/223 (46%), Positives = 142/223 (63%), Gaps = 16/223 (7%)
Frame = +3
Query: 13 LLLIVFFSSTTTLAQ-KSPAPAPSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINS 71
L+L+ F S + Q ++PAPAPS P ++ IL+KAG +TTLIRLL+ +Q TQI S
Sbjct: 42 LILLTFLSLFASKIQAQAPAPAPS---GPVNLTAILEKAGQYTTLIRLLKESQQLTQIES 212
Query: 72 QLLNSNGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPV 131
QL ++ G TLFAP DN+F +LK G +N L+D+QK KLI +H+ P + S+S+ T+SNPV
Sbjct: 213 QLNSTTQGFTLFAPTDNAFQNLKSGAINDLTDDQKVKLILYHVTPKYYSLSDLQTVSNPV 392
Query: 132 RTQAGDDPYRLGLNVTSSGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFVA 191
RTQA + GLN GNQVN+TTG+V ++ + LA+YQVD+VLLP + F A
Sbjct: 393 RTQASEKEGSWGLNFKGQGNQVNVTTGVVTTSINNDLRQQFPLAIYQVDRVLLPLELFGA 572
Query: 192 KPPAPAPAP--------EKTKSSKKK-------SSDSDGGVAG 219
K P+ AP+P ++T SS KK +S D GVAG
Sbjct: 573 KSPSSAPSPKSSETTPSDETPSSGKKGGAPSPAASQKDNGVAG 701
>TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan protein-like,
partial (24%)
Length = 605
Score = 141 bits (356), Expect = 9e-35
Identities = 75/140 (53%), Positives = 97/140 (68%), Gaps = 11/140 (7%)
Frame = +1
Query: 26 AQKSPAPA----------PSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLN 75
A +PAPA PS+D++ DII+IL+KA F TLIRLL+TTQ+ Q+N+QL+
Sbjct: 184 ASLAPAPAKPLVPSLPQSPSSDSSGQDIIKILRKAKSFNTLIRLLKTTQIINQVNAQLVT 363
Query: 76 S-NGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPVRTQ 134
+ NGGLT+ AP+D +FS LK G+ NSL Q+ +LIQFH+LP +VS SNFD LSNPV T
Sbjct: 364 TKNGGLTILAPDDGAFSQLKAGYFNSLDGRQQKELIQFHVLPQYVSSSNFDALSNPVLTL 543
Query: 135 AGDDPYRLGLNVTSSGNQVN 154
A D P +NVT+ GN VN
Sbjct: 544 ASDSPKGYQINVTAYGNSVN 603
>TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like, partial
(42%)
Length = 436
Score = 139 bits (350), Expect = 5e-34
Identities = 73/129 (56%), Positives = 95/129 (73%)
Frame = +3
Query: 9 LSFTLLLIVFFSSTTTLAQKSPAPAPSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQ 68
L LL + F T AQ + APAP+ PT+I +IL+KAG FTT I++L+ TQV+ +
Sbjct: 36 LPLLLLNMFLFLFQTISAQTAAAPAPA---GPTNITQILEKAGQFTTFIKILKATQVADR 206
Query: 69 INSQLLNSNGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLS 128
INSQL NSN GLT+FAP DN+FSSLKPG LNS++ + + +LIQFH+LPT SMS F+T S
Sbjct: 207 INSQLNNSNQGLTIFAPTDNAFSSLKPGTLNSINTQDQLQLIQFHILPTLYSMSQFETAS 386
Query: 129 NPVRTQAGD 137
NP+ TQAG+
Sbjct: 387 NPLHTQAGN 413
>TC15809 weakly similar to PIR|JN0747|JN0747 histone H1-I - Volvox carteri
{Volvox carteri;}, partial (10%)
Length = 526
Score = 103 bits (257), Expect = 3e-23
Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 29/146 (19%)
Frame = +2
Query: 3 MMKHPFLSFTLLLIVFFSSTTTL------AQKSPAPAP---------------------- 34
MMK L L + FSST + A KSPA P
Sbjct: 89 MMKQVVLFSFSLFFLLFSSTIAISPAPAAAPKSPAKTPPTPKATAPSPKPLVPTLPQSPD 268
Query: 35 STDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLNS-NGGLTLFAPNDNSFSSL 93
S+D+ P DI +IL+KA F+ LIRLL+TT++ INSQL+ + NGG+T+ AP+D++FS L
Sbjct: 269 SSDSTPDDITKILRKAKIFSVLIRLLKTTEIMNNINSQLITAKNGGITILAPDDSAFSHL 448
Query: 94 KPGFLNSLSDEQKNKLIQFHLLPTFV 119
K GFLNSL++ QK +L QFH+LP +V
Sbjct: 449 KAGFLNSLNENQKIELCQFHILPQYV 526
>TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (69%)
Length = 1527
Score = 97.1 bits (240), Expect = 3e-21
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Frame = +1
Query: 31 APAPSTDTAPTDIIRILKKAG--GFTTLIRLLQTTQVSTQINSQLLNSNGGLTLFAPNDN 88
A AP+ + D+I I+ K G F L+R + + N NGGLT+F P D+
Sbjct: 598 AEAPTAAPSDIDVISIMSKQGCKAFADLLRTSKALPTFKE------NVNGGLTVFCPTDS 759
Query: 89 SFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPVRTQAGDDPYRLGLNVTS 148
+ + P + N L+D QK L+ +H +P + S+ + + + T A + + V +
Sbjct: 760 AVNGFLPKYKN-LTDSQKVSLLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQN 936
Query: 149 SGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFF-------VAKPPAPAPAPE 201
G VN+ T + + GT+ VY++ KVL+PR+ F V+ +P PA +
Sbjct: 937 DGEDVNLETKVNTAGIIGTLIDQDPFVVYKISKVLMPRELFKGVTEKTVSPAESPKPAKK 1116
Query: 202 KTKSSKKKSS---------------DSDGGVAGDDDSGAVNVKQ 230
K+KS+KK ++ DSD A DD+SG + Q
Sbjct: 1117KSKSTKKGNADDDAADSPADGPADDDSDNQTAADDNSGVTGLNQ 1248
Score = 30.4 bits (67), Expect = 0.30
Identities = 26/114 (22%), Positives = 48/114 (41%)
Frame = +1
Query: 16 IVFFSSTTTLAQKSPAPAPSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLN 75
+VFF T++ S A + +I RIL K F+T L T ++ +IN +
Sbjct: 70 LVFFFLIATISLPSSTTAAAAANGSHNITRILAKHPDFSTFNHYLTLTHLAGEINHRQT- 246
Query: 76 SNGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSN 129
+T+ A ++ + SSL L+ ++ H+L + ++N
Sbjct: 247 ----ITILAIDNAAMSSLLD---KHLTLSTLKNVLSLHVLVDYFGAKKLHQITN 387
>AV413145
Length = 397
Score = 89.0 bits (219), Expect = 7e-19
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 32/131 (24%)
Frame = +1
Query: 1 MVMMKHPFLSFTLLLIV-FFSSTTTLAQKSPAPAP------------------------- 34
M+M K LS +L L+V STTTLAQ SPA AP
Sbjct: 4 MMMSKQSLLSLSLALLVSLLYSTTTLAQLSPASAPLQPAPPVPTTPASAPKPLVPSLPES 183
Query: 35 -----STDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLN-SNGGLTLFAPNDN 88
+ DTA DI+ IL+KA F LIRL++TTQ+ Q+NSQLL GGLT+ AP+D+
Sbjct: 184 PSDSTAPDTAAVDIVGILRKAKSFNVLIRLMKTTQLINQLNSQLLTIKTGGLTILAPDDS 363
Query: 89 SFSSLKPGFLN 99
+FS LK GFLN
Sbjct: 364 AFSELKAGFLN 396
>TC14679 similar to UP|FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan
protein 7 precursor, partial (50%)
Length = 724
Score = 87.8 bits (216), Expect = 2e-18
Identities = 56/157 (35%), Positives = 81/157 (50%), Gaps = 10/157 (6%)
Frame = +2
Query: 79 GLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPVRTQAGDD 138
G+T+F P D+SFS+LK L+ L+ +Q ++I FH LP + S+++F LS Q G
Sbjct: 8 GITIFVPKDSSFSALKKPSLSKLTSDQLKQVILFHALPKYYSLADFKNLS-----QTGST 172
Query: 139 PYRLG----LNVTSSGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFF---VA 191
P G LN T V++ +G V V++ +A+Y+V KVLLP F +
Sbjct: 173 PTFAGGSYSLNFTDDSGTVHINSGWSKTKVTSAVHSTDPVAIYEVGKVLLPEAVFGTDIP 352
Query: 192 KPPAPAPAPE---KTKSSKKKSSDSDGGVAGDDDSGA 225
PAPAPAPE S +KS+DS D +
Sbjct: 353 PTPAPAPAPEIAPAADSPIEKSADSKASSPSSPDGSS 463
>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
partial (61%)
Length = 989
Score = 86.7 bits (213), Expect = 4e-18
Identities = 53/171 (30%), Positives = 94/171 (53%)
Frame = +2
Query: 31 APAPSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLNSNGGLTLFAPNDNSF 90
AP PS+ ++ +++KAG T +L + T ++ ++ GLT+FAP+D +F
Sbjct: 38 APPPSSSV---NLTALIEKAGCKTFASLVLSNGLIKTFQSA----ADKGLTIFAPSDEAF 196
Query: 91 SSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPVRTQAGDDPYRLGLNVTSSG 150
+ L+ L++ + L+Q+H + ++ + + T +P+ T A + + V+ +G
Sbjct: 197 KARGVPDLSKLTNAEVVSLLQYHAVAKYLPVGSLKTTKDPISTLATNGAGKFEYTVSVAG 376
Query: 151 NQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFVAKPPAPAPAPE 201
+ V + TG+ + V TV L++Y VD VLLP + F AK P+PAPAPE
Sbjct: 377 DSVTLHTGVDSSRVADTVLDSTPLSIYSVDSVLLPPELF-AKSPSPAPAPE 526
>AV771016
Length = 506
Score = 85.5 bits (210), Expect = 8e-18
Identities = 41/52 (78%), Positives = 45/52 (85%)
Frame = -3
Query: 168 VYTDHQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKTKSSKKKSSDSDGGVAG 219
VY+D+QL VY VDKVLLPRDFFVAKPPAPAPAPEK K+SKKKS+D G AG
Sbjct: 504 VYSDNQLPVYLVDKVLLPRDFFVAKPPAPAPAPEKAKASKKKSADDTEGPAG 349
>TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellular tumor
antigen {Homo sapiens;} , partial (6%)
Length = 468
Score = 84.0 bits (206), Expect = 2e-17
Identities = 55/133 (41%), Positives = 69/133 (51%), Gaps = 35/133 (26%)
Frame = +1
Query: 3 MMKHPFLSFTLLLIVFFSSTTTLAQK-------------------SPAPAPSTDTAPT-- 41
MMK SF L +F S TTLAQ +PAPAPS P
Sbjct: 76 MMKQILFSFLFLAPIF--SITTLAQSPAAAPKPPAKPAPTKPSPATPAPAPSKPLVPALP 249
Query: 42 -------------DIIRILKKAGGFTTLIRLLQTTQVSTQINSQLL-NSNGGLTLFAPND 87
D+++IL+KA F TLIRLL+TTQ+ Q+N+QL+ NGGLT+ AP+D
Sbjct: 250 QSPMVNPDSSGNQDVVKILRKAKSFNTLIRLLKTTQIINQVNAQLVATKNGGLTILAPDD 429
Query: 88 NSFSSLKPGFLNS 100
+FS LK GF NS
Sbjct: 430 GAFSQLKAGFFNS 468
>TC14342 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like,
partial (27%)
Length = 724
Score = 82.8 bits (203), Expect = 5e-17
Identities = 47/88 (53%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Frame = +2
Query: 135 AGDDPYRLGLNVTSSGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFVAKP- 193
+GD Y L NVT+SGNQV++TTG+V TV T+Y+D LAVYQV+KVLLP F P
Sbjct: 17 SGDGEYPL--NVTTSGNQVHITTGVVETTVSNTIYSDKTLAVYQVEKVLLPLALFGQAPT 190
Query: 194 PAPAPAPEKTKSSKK-KSSDSDGGVAGD 220
PAPA AP T+ K ++SDS G + D
Sbjct: 191 PAPAEAPAPTQPEKNVRASDSPSGSSSD 274
>TC13019
Length = 565
Score = 82.0 bits (201), Expect = 9e-17
Identities = 42/81 (51%), Positives = 56/81 (68%)
Frame = +1
Query: 144 LNVTSSGNQVNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKT 203
LNVT+ GN VN++TG+V+VT+ G VY D LA+Y+VDKVL+P DF KP APAPA K
Sbjct: 7 LNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPALAKA 186
Query: 204 KSSKKKSSDSDGGVAGDDDSG 224
+ K++S ++ DDD G
Sbjct: 187 PKADKENSSAE----DDDDQG 237
>TC14428 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan protein
Pop14A9, partial (15%)
Length = 573
Score = 81.3 bits (199), Expect = 1e-16
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Frame = +1
Query: 141 RLGLNVTSSGNQ-VNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFV-AKPPAPAP 198
RL LNV + GN VN++TG+VN ++ G VY+D LAVY VDKVLLP DFF+ AK PA AP
Sbjct: 1 RLPLNVNALGNSIVNISTGVVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAP 180
Query: 199 -----APEKTKSSKKKSSDSDGGVAGDDDSGAVNVKQRRLMLVPVAVATI 243
AP+ K + + + D+ SGAV++ + M + VA+ I
Sbjct: 181 SLSAKAPKAAKENSSAEDEDETNQDQDNKSGAVSLVKTTFMSLGVALVAI 330
>AI967375
Length = 397
Score = 77.8 bits (190), Expect = 2e-15
Identities = 46/106 (43%), Positives = 64/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 29 SPAPAPSTDTAPTDIIRILKKAGGFTTLIRLLQTTQVSTQINSQLLNS-NGGLTLFAPND 87
S +PS+D++ DII+IL+KA F TLIRLL+TTQ+ Q+ +QL+ + NGGLT+ AP+D
Sbjct: 67 SATQSPSSDSSGQDIIKILRKAKSFNTLIRLLKTTQIINQVXAQLVTTKNGGLTILAPDD 246
Query: 88 NSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMSNFDTLSNPVRT 133
+F S K G S K L + NFD L++PV T
Sbjct: 247 GAFHSSKLGTQLSGRSPTKGTDTVPMFLHNMCQVPNFDGLNHPVLT 384
>TC14429 weakly similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like,
partial (19%)
Length = 530
Score = 63.9 bits (154), Expect = 2e-11
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = +2
Query: 153 VNMTTGIVNVTVGGTVYTDHQLAVYQVDKVLLPRDFFV-AKPPAPAPAPE--KTKSSKKK 209
VN++TG+VN ++ G VY+D LAVY VDKVLLP DFF+ AK PA AP+ K++K+
Sbjct: 5 VNISTGVVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAPSLSA*APKAAKEN 184
Query: 210 SSDSDGGVAGDD 221
SS D D
Sbjct: 185 SSAEDEDETNQD 220
>TC17034
Length = 519
Score = 58.9 bits (141), Expect = 8e-10
Identities = 37/80 (46%), Positives = 44/80 (54%), Gaps = 4/80 (5%)
Frame = +2
Query: 163 TVGGTVYTDHQLAVYQVDKVLLPRDFFVAKPPAPAP----APEKTKSSKKKSSDSDGGVA 218
T+ G VY+D LA+Y VD+VL+P DF K PAPAP APE S K SSD DG
Sbjct: 5 TLTGIVYSDKTLAIYHVDQVLVPLDFSKPKSPAPAPTLANAPE---SDKDNSSDEDG--- 166
Query: 219 GDDDSGAVNVKQRRLMLVPV 238
DD GA + L+ V
Sbjct: 167 --DDQGAKKATSGAIQLISV 220
>TC14341 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (9%)
Length = 636
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/67 (38%), Positives = 35/67 (51%), Gaps = 8/67 (11%)
Frame = -1
Query: 167 TVYTDHQLAVYQVDKVLLPRDFF-VAKPPAPAPAPE-------KTKSSKKKSSDSDGGVA 218
T+ + LA++ +DKVLLP++ F A+ P+PAPAPE K KKK
Sbjct: 636 TLIDEQPLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAP 457
Query: 219 GDDDSGA 225
DD S A
Sbjct: 456 ADDSSDA 436
>AV768218
Length = 424
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 175 AVYQVDKVLLPRDFF-VAKPPAPAPAPEKTKSSKKKSSDSDGGVAGDDDSGAVNVKQRRL 233
A+Y+V KVLLP DFF VAK PA AP+ S++ +D + + DD S + + +
Sbjct: 422 AIYKVGKVLLPMDFFAVAKAPAKAPSSAPEPSAEAPKADKE-KPSSDDSSDSSQISSTSM 246
Query: 234 MLVPVAVAT 242
V + T
Sbjct: 245 KSSSVKITT 219
>TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored protein
{Arabidopsis thaliana;} , partial (34%)
Length = 862
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Frame = +2
Query: 63 TQVSTQINSQLLNSNGGLTLFAPNDNSFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSMS 122
T ++T++ +L++ LT+ APND + + L L+ ++ +I +H++P + +
Sbjct: 11 TSLATEMG-RLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQ--IIYYHIIPEYQTE- 178
Query: 123 NFDTLSNPVRT--QAGDDPYRLGLNVTSSGNQVNMTTGIVNVTV---GGTVYTDHQLAVY 177
+++ N VR + D RL V + + ++ G +V+ +YTD +++V
Sbjct: 179 --ESMYNAVRRFGKVRYDTLRLPHKVVAQESDGSVKFGHADVSAYLFDPDIYTDGRISVQ 352
Query: 178 QVDKVLLP 185
+D VLLP
Sbjct: 353 GIDGVLLP 376
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,706,956
Number of Sequences: 28460
Number of extensions: 51819
Number of successful extensions: 810
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of query: 250
length of database: 4,897,600
effective HSP length: 88
effective length of query: 162
effective length of database: 2,393,120
effective search space: 387685440
effective search space used: 387685440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139344.5