BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.1 + phase: 0
(368 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12908 similar to UP|Q9FG54 (Q9FG54) Root cap protein 2-like pr... 108 1e-24
TC18296 similar to UP|Q9FZL4 (Q9FZL4) MGDG synthase type A, part... 39 0.002
TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12... 39 0.002
BP030058 37 0.004
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 37 0.005
TC12416 similar to GB|AAH56066.1|33417132|BC056066 sop-prov prot... 37 0.007
AV423531 37 0.007
BP034485 36 0.012
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 35 0.026
TC11068 similar to GB|AAA28385.1|156990|DROBCD segmentation prot... 35 0.026
AW719960 34 0.034
TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, parti... 33 0.075
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 32 0.13
BI419973 32 0.22
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 32 0.22
TC14280 weakly similar to UP|Q94IC5 (Q94IC5) BURP domain-contain... 32 0.22
AW719782 31 0.29
AV406469 31 0.29
TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, par... 31 0.37
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 30 0.49
>TC12908 similar to UP|Q9FG54 (Q9FG54) Root cap protein 2-like protein,
partial (28%)
Length = 419
Score = 108 bits (270), Expect = 1e-24
Identities = 48/96 (50%), Positives = 67/96 (69%)
Frame = +2
Query: 267 EMDIRVRPIGEKENKAHNYQLPSDDAFAHLETQFKFKNPTDSIEGVLGQTYRPSYVSPVK 326
E+ I V P+ ++++K HNYQ+P DD FAHLE QFKF + ++GVLG+TY+P + +P K
Sbjct: 53 EISINVVPVTKEDSKIHNYQIPDDDCFAHLEVQFKFYGLSSKVDGVLGRTYQPDFQNPAK 232
Query: 327 RGVAMPMMGGEDKYQTPSLFSTTCKLCRFQRPSTSQ 362
GVAMP++GGED+Y+T SL S C C F S+
Sbjct: 233 LGVAMPVVGGEDRYRTSSLLSADCGDCVFAPGQASE 340
>TC18296 similar to UP|Q9FZL4 (Q9FZL4) MGDG synthase type A, partial (7%)
Length = 552
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 3 AAIAQGQGNGNGNGNNGNGKGNGNGNGNNGNGKG-NDKEEGKEKGKEKEKAPKK 55
A++ G+G+GNG G+ G G G G+GNG G+G + E G+ G + ++ PKK
Sbjct: 377 ASLRVGEGDGNGGGD-GVGSGAGDGNGVGEGGRGVVEDERGQLSGADGDR-PKK 532
>TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12470
{Arabidopsis thaliana;}, partial (18%)
Length = 507
Score = 38.5 bits (88), Expect = 0.002
Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 8/58 (13%)
Frame = +3
Query: 12 GNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGK--------EKGKEKEKAPKKKKAPKE 61
GNG G G G G G G G G+G+ D++ + E GK E P A E
Sbjct: 225 GNGGGGTGGGDGGGGGGGGGGDGESEDRDRNRGEALLVLAEVGKPLEYLPADLAAAME 398
>BP030058
Length = 455
Score = 37.4 bits (85), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +1
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGN 37
G G+G G G +G+G G G G G+ G G G+
Sbjct: 325 GGGDGGGGGGDGHGSGGGGGEGDGGGGGGS 414
Score = 35.0 bits (79), Expect = 0.020
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKGKE 48
G G G+G G G+G G+G G G G G + +G +
Sbjct: 319 GGGGGDGGGGGGDGHGSGGGGGEGDGGGGGGSPQVSPQGHD 441
Score = 34.7 bits (78), Expect = 0.026
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = +1
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGN 37
G+G G G G+ G G G+G+G+G G G+G+
Sbjct: 307 GEGGGGGGGDGGGGGGDGHGSG-GGGGEGD 393
Score = 33.1 bits (74), Expect = 0.075
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 7 QGQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKG 46
+G G G G G G G+G G G +G+G G EG G
Sbjct: 286 EGYFGGGGEGGGGGG-GDGGGGGGDGHGSGGGGGEGDGGG 402
Score = 32.3 bits (72), Expect = 0.13
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKG 46
GQ G G G G G G+G G G+G G+ G+ G
Sbjct: 280 GQEGYFGGGGEGGGGGGGDGGGGGGDGHGSGGGGGEGDG 396
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 37.0 bits (84), Expect = 0.005
Identities = 19/49 (38%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = -3
Query: 5 IAQGQGNGNGNGNNGN-GKGNGNGNGNNGNGKGNDKEEGKEKGKEKEKA 52
+ +G G+G G G G G+G G+G G+G D EEG+E+ +E+ +A
Sbjct: 268 VEEGSGDGRWEGRGGACGGGSGGGDGGGNEGEG*D-EEGEEEEEEEAEA 125
>TC12416 similar to GB|AAH56066.1|33417132|BC056066 sop-prov protein
{Xenopus laevis;} , partial (32%)
Length = 416
Score = 36.6 bits (83), Expect = 0.007
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 6 AQGQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKGKEKEKAPKKK 56
A+G G+G G G G G+G G G G G G+G + + G +KE P K
Sbjct: 117 AEGFGDGFGRGR-GEGRGRGEGRGR-GRGRGRGRRGRRGDGDKKEWVPVTK 263
>AV423531
Length = 265
Score = 36.6 bits (83), Expect = 0.007
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 94 CPAECKTRKPKKNKKDKGCFIDCSS-KCEATCKFRRANC 131
CP EC + P + K K C+IDCSS C+ CK + +C
Sbjct: 152 CPYECPLKSPS-DPKAKVCYIDCSSPTCQTYCKRYKPDC 265
>BP034485
Length = 485
Score = 35.8 bits (81), Expect = 0.012
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKGKEKEKAP 53
G+G G G N NG +G+G G N NG G + + G + P
Sbjct: 324 GKGGGGGGKGNKNGHDHGHGIGGNMNGNGGHMDPMSQLGSMGQMGP 461
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 34.7 bits (78), Expect = 0.026
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 12 GNGNGNNGNGKGNGNGNGNNGNGKGNDKEE 41
GN + NNG G G+G G G+ G+G G+D +E
Sbjct: 285 GNDDNNNG-GDGSGGGGGDEGSGGGDDGDE 371
Score = 26.6 bits (57), Expect = 7.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 11 NGNGNGNNGNGKGNGNGNGNNGN 33
N G+G+ G G G+G G++G+
Sbjct: 300 NNGGDGSGGGGGDEGSGGGDDGD 368
>TC11068 similar to GB|AAA28385.1|156990|DROBCD segmentation protein PRD 4
{Drosophila melanogaster;} , partial (53%)
Length = 588
Score = 34.7 bits (78), Expect = 0.026
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 15 NGNNGNGKGNGNGNGNNGNGKGNDKEE 41
NG NG+G GNG G+G NGNG G + E
Sbjct: 58 NGANGHGDGNGYGDG-NGNGDGYEHHE 135
Score = 30.4 bits (67), Expect = 0.49
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 11 NGNGNGNNGNGKGNGNGNGNNGNGKG 36
NG+G+GN G G GNGNG+G + G
Sbjct: 67 NGHGDGN-GYGDGNGNGDGYEHHESG 141
Score = 28.9 bits (63), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 11 NGNGNGNNGNGKGNGNGNGN 30
NG +GNG G+GNGNG+
Sbjct: 58 NGANGHGDGNGYGDGNGNGD 117
>AW719960
Length = 449
Score = 34.3 bits (77), Expect = 0.034
Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 2/45 (4%)
Frame = +3
Query: 10 GNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKE--KGKEKEKA 52
G G G G+ G+G GK K+EGKE KGKE +KA
Sbjct: 303 GGAPGYGTPGHSAGSGKEGKKGKEGKDGKKKEGKEGKKGKEGKKA 437
Score = 30.0 bits (66), Expect = 0.64
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Frame = +3
Query: 4 AIAQGQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEK-GKEKEKAPKKKKA 58
A A G G G+ G+G G KG + ++GK+K GKE +K + KKA
Sbjct: 273 APAAGYPGAPGGAPGYGTPGHSAGSGKEGK-KGKEGKDGKKKEGKEGKKGKEGKKA 437
>TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, partial (11%)
Length = 690
Score = 33.1 bits (74), Expect = 0.075
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Frame = +2
Query: 17 NNGNGKGNGNGNGNNGNGK-----------GNDKEEGKEKGKEKEKAPKKKKAPKEES 63
N+G+G G G+G G+ G G GN G K KEKEK ++K EE+
Sbjct: 56 NSGSGSGLGSGTGSEGGGYSPMEFMGSEQIGNGYFGGGLKEKEKEKETEQKTEVVEEA 229
Score = 33.1 bits (74), Expect = 0.075
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = +2
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKGKEKEKAPKKKKAPKEESSNYQ 67
G G G+G G+ G G G+ G G KEK KEKE K + + E++
Sbjct: 68 GSGLGSGTGSEGGGYSPMEFMGSEQIGNGYFGGGLKEKEKEKETEQKTEVVEEAEAAAKN 247
Query: 68 QLQTL 72
++Q L
Sbjct: 248 EVQEL 262
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 32.3 bits (72), Expect = 0.13
Identities = 14/36 (38%), Positives = 17/36 (46%), Gaps = 6/36 (16%)
Frame = +1
Query: 7 QGQGNGNGNGNN------GNGKGNGNGNGNNGNGKG 36
+G G G G G G G+G G G G G G+G
Sbjct: 100 RGDGGGRGGGRGTPFKARGGGRGGGGGRGGRGGGRG 207
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = +1
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGK 35
G+G G G G G G+G G G G G +
Sbjct: 160 GRGGGGGRGGRGGGRG-GRGGGMKGGSR 240
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 QGQGNGNG-NGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKG 46
+G+G G G G G+G G+G G G K G +G
Sbjct: 46 RGRGGGGGFRGRGDRGRGRGDGGGRGGGRGTPFKARGGGRG 168
>BI419973
Length = 551
Score = 31.6 bits (70), Expect = 0.22
Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = +2
Query: 9 QGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEK-GKEKEKAPKKKKAPKEES 63
+G G GN +N KGNG+G GN +EGK+K G + + KKK K+++
Sbjct: 38 KGKG-GNFSNEGKKGNGDG--------GNKSKEGKQKGGGGGDSSSDKKKKTKDKN 178
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 31.6 bits (70), Expect = 0.22
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = +3
Query: 7 QGQGNGNGNGNNGNGKGNG-NGNGNNGNGKGNDKEEG 42
QG+ G+G G G+G G G G G + G D+E G
Sbjct: 981 QGERGGDGGGGRGSGGGEGAAGGGGGAHDMGGDEECG 1091
>TC14280 weakly similar to UP|Q94IC5 (Q94IC5) BURP domain-containing protein
(Fragment), partial (54%)
Length = 723
Score = 31.6 bits (70), Expect = 0.22
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 8 GQGNGNGNGNNGNGKGNGNGNGNNGNGKG 36
G+G N N G+G G+G N N G GKG
Sbjct: 260 GKGGVNVNAGKGSGGGHGGTNVNVGGGKG 346
>AW719782
Length = 428
Score = 31.2 bits (69), Expect = 0.29
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Frame = +3
Query: 5 IAQGQGNGNGNGNNGNGKGNGNGNGNNGN-GKGNDKEEGKEKGKEKEKAPKKKKAPKEE 62
+ G G G + G G G G+G++GN GK + E G+ E P A +E
Sbjct: 237 VLHSTAGGGGGGGSFGGHGGGGGDGDSGNDGKRDAIMVLAEAGRSLESVPSDLAAAIKE 413
>AV406469
Length = 147
Score = 31.2 bits (69), Expect = 0.29
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 1 MEAAIAQGQGNGNGNG 16
ME AIAQGQG G+GNG
Sbjct: 98 MEGAIAQGQGKGDGNG 145
>TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, partial (51%)
Length = 749
Score = 30.8 bits (68), Expect = 0.37
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = +3
Query: 1 MEAAIAQGQGNGNGNGNNGNGKGNGNGNGNN 31
+ + A+ +GN G G G+G G G G G++
Sbjct: 219 LSSGAAEMEGNSGGGGGGGSGGGGGGGGGSD 311
Score = 29.6 bits (65), Expect = 0.83
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 10 GNGNGNGNNGNGKGNGNGNGNNGNGKGNDKE 40
G GN+G G G G+G G G G G+D E
Sbjct: 228 GAAEMEGNSGGGGGGGSGGGGGGGG-GSDVE 317
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 30.4 bits (67), Expect = 0.49
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Frame = -2
Query: 8 GQGNGNGNGNNGNGK-----GNGNGNGNNGNGKGNDKEEGKEK 45
G G GN + N N K G G G G NG+ + E+G+++
Sbjct: 527 GAGYGNNSNNKSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQ 399
Score = 26.9 bits (58), Expect = 5.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -2
Query: 9 QGNGNGNGNNGNGKGNGNGNGNNGNGKGNDKEEGKEKGKEKEKAPKKKKAPKEESSN 65
+G+ + +G+ G+G + + +G G GN+ K E P P+E +
Sbjct: 596 EGDEDDDGDGPFGEGEEDLSSEDGAGYGNNSNNKSNSKKAPEGGPGAGAGPEENGED 426
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,666,505
Number of Sequences: 28460
Number of extensions: 102022
Number of successful extensions: 985
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of query: 368
length of database: 4,897,600
effective HSP length: 92
effective length of query: 276
effective length of database: 2,279,280
effective search space: 629081280
effective search space used: 629081280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC139344.1