TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137824.11 - phase: 0 
         (316 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089235                                                              192  5e-50
BG662437                                                              156  6e-45
TC15239 UP|Q852R1 (Q852R1) Serine palmitoyltransferase, partial ...    64  3e-19
AW719984                                                               30  0.41
BP042597                                                               27  3.5
TC12928                                                                26  7.7

>AU089235 
          Length = 407

 Score =  192 bits (489), Expect = 5e-50
 Identities = 92/123 (74%), Positives = 106/123 (85%)
 Frame = +1

Query: 1   MASSFINFVNTTIDLVTYALHAPSARAVVFGFNIGGHLFIEVLLLVVILFLLSQKSYKPP 60
           MA++ ++FVNT +  + +A+ APSARAVVFG NIGGHLF+EV LLVVILFLLSQKSYKPP
Sbjct: 19  MAATVVDFVNTALGWLRFAVDAPSARAVVFGVNIGGHLFLEVFLLVVILFLLSQKSYKPP 198

Query: 61  KRPLSNKEIDELCDEWVPQPLIPSLNDEMPYEPPVLESAAGPHTIVNGKEVVNFASANYL 120
           KRPL+NKEIDELCDEW P  LIPSLN+ M YEPP L SAAGPHTI NGK+VVNF+S NYL
Sbjct: 199 KRPLTNKEIDELCDEWAPXSLIPSLNEXMLYEPPXLXSAAGPHTIXNGKDVVNFSSXNYL 378

Query: 121 GLI 123
           GL+
Sbjct: 379 GLV 387


>BG662437 
          Length = 313

 Score =  156 bits (395), Expect(2) = 6e-45
 Identities = 72/79 (91%), Positives = 77/79 (97%)
 Frame = +1

Query: 99  AAGPHTIVNGKEVVNFASANYLGLIGHQKLLDSCSSALEKYGVGSCGPRGFYGTIDVHLD 158
           AAGPHTIVNGK+VVNF+SANYLGL+GHQKLLDSC+SALEKYGVGSCGPRGFYGTIDVHLD
Sbjct: 16  AAGPHTIVNGKDVVNFSSANYLGLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLD 195

Query: 159 CEGRISKFLGTPDSILYSY 177
           CE RI+KFLGTPD ILYSY
Sbjct: 196 CEARIAKFLGTPD*ILYSY 252



 Score = 40.8 bits (94), Expect(2) = 6e-45
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +2

Query: 178 GLSTMFSAIPAFSKKGDIIV 197
           GLSTM+SAIPAFSKKGDIIV
Sbjct: 254 GLSTMYSAIPAFSKKGDIIV 313


>TC15239 UP|Q852R1 (Q852R1) Serine palmitoyltransferase, partial (81%)
          Length = 1896

 Score = 63.5 bits (153), Expect(2) = 3e-19
 Identities = 39/126 (30%), Positives = 62/126 (48%), Gaps = 5/126 (3%)
 Frame = +1

Query: 112 VNFASANYLGLIGHQ-----KLLDSCSSALEKYGVGSCGPRGFYGTIDVHLDCEGRISKF 166
           +N  S NYLG          +++DS    L+KY   +C  R   GT D+H + E  ++ F
Sbjct: 28  LNLGSYNYLGFAASDEYCTPRVIDS----LKKYSPSTCSARVDGGTTDLHNELEECVASF 195

Query: 167 LGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNNMD 226
           +  P ++++  G  T  + +P    KG +I++D   H  I NG   S +T+  F+HN   
Sbjct: 196 VRKPAALVFGMGYVTNSAILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNMPS 375

Query: 227 SLRETL 232
            L E L
Sbjct: 376 HLEEVL 393



 Score = 47.4 bits (111), Expect(2) = 3e-19
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +2

Query: 249 IVIEALYQNSGQIAPLDEIIKLKEKYCFRILLDESNSFGVLGSSGRGLTEHYGV 302
           +++E +Y   G++  L EII + +KY     LDE++S G +G +GRG+ E  GV
Sbjct: 452 VIVEGIYSMEGELCKLPEIIAICKKYKAYTYLDEAHSIGAVGKTGRGVRELLGV 613


>AW719984 
          Length = 437

 Score = 30.4 bits (67), Expect = 0.41
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 109 KEVVNFASANYLGLIGHQKLLDSCSSALEKYGVGSCGPRGFYGTIDVHLDCEGRISKFLG 168
           K+++ F+  +YLGL  H  +  + + A +++G+G  G     G  + H   E  ++    
Sbjct: 233 KKLILFSGNDYLGLSSHPTIGRAAAKAAQEHGMGPRGSALICGYTNYHRLXESSLADLKN 412

Query: 169 TPDSIL 174
             D +L
Sbjct: 413 KEDCLL 430


>BP042597 
          Length = 414

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 12/41 (29%), Positives = 21/41 (50%)
 Frame = -2

Query: 70  DELCDEWVPQPLIPSLNDEMPYEPPVLESAAGPHTIVNGKE 110
           +E C  W      P + + + + PP L   A P+T++ G+E
Sbjct: 410 EENCCRWAKDVDTPCVCELLVHLPPFLVKPAHPYTLIVGEE 288


>TC12928 
          Length = 755

 Score = 26.2 bits (56), Expect = 7.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 32  FNIGGHLFIEVLLLVVILFL-LSQKSYKPPKRPLSNKEIDELCDEWV 77
           +++G H  I V+    I+ L L Q     PK P ++ +I  LC+EW+
Sbjct: 200 WHLGSHFQIFVIDRS*IMSLPLLQIKQVHPKCPCTSIDIKPLCNEWI 60


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,759,168
Number of Sequences: 28460
Number of extensions: 85984
Number of successful extensions: 389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of query: 316
length of database: 4,897,600
effective HSP length: 90
effective length of query: 226
effective length of database: 2,336,200
effective search space: 527981200
effective search space used: 527981200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)