TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137602.4 - phase: 0 
         (130 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c...    27  1.5
AV768810                                                               25  4.3
BP041617                                                               24  7.3

>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
          Length = 1907

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 14   ITERQTSLGLIDEIFGQVKNPYYAVRYNSEKGIREGTLISFVAEFVNYVMHPVSMMKRCP 73
            +TE QT+L     I   + +  YA   ++EK   E      VAE  N    P SMM +C 
Sbjct: 977  VTEFQTNLVPYPRIHFMLSS--YAPVISAEKAYHEQLS---VAEITNSAFEPSSMMAKCD 1141

Query: 74   MKQNFWM 80
             +   +M
Sbjct: 1142 PRHGKYM 1162


>AV768810 
          Length = 564

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 109 NNIKQIPLKDGSIPTMPV 126
           NN+  + L D SIPT P+
Sbjct: 378 NNVNNLILNDNSIPTSPI 431


>BP041617 
          Length = 518

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -2

Query: 82  RKRLSTRDCKNIIKEVV 98
           +K+ STR C N+IKE +
Sbjct: 391 QKQTSTRQCYNLIKECI 341


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,114,490
Number of Sequences: 28460
Number of extensions: 21924
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of query: 130
length of database: 4,897,600
effective HSP length: 80
effective length of query: 50
effective length of database: 2,620,800
effective search space: 131040000
effective search space used: 131040000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)