TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137509.6 - phase: 0 /pseudo
         (85 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP054462                                                               67  6e-13
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        62  1e-11
BP046863                                                               50  9e-08
TC16686 similar to UP|Q93Z54 (Q93Z54) AT3g15460/MJK13_12, partia...    27  0.65
BP085845                                                               25  1.9
TC15734                                                                25  2.5
TC13302                                                                24  5.5
AV780082                                                               24  5.5
TC19035 UP|Q84LL5 (Q84LL5) Cullin 4, partial (14%)                     24  5.5
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra...    23  7.2
TC14981 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (11%)     23  7.2
TC8310 UP|Q9SPM8 (Q9SPM8) Nod factor binding lectin-nucleotide p...    23  7.2
AV770385                                                               23  7.2
AU251888                                                               23  9.4
TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, ...    23  9.4

>BP054462 
          Length = 422

 Score = 67.0 bits (162), Expect = 6e-13
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
 Frame = +1

Query: 4   SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGV 62
           SQ   ++Y +K+R+D++YQ+GD VFL++ P      A K   K +P + GP+ ++ K+G 
Sbjct: 172 SQDMMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGA 351

Query: 63  VAYRIALPPSLSNLHDVF 80
           VAYR+ L P+ S +H VF
Sbjct: 352 VAYRLEL-PAHSRVHPVF 402


>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 30/51 (58%), Positives = 39/51 (75%)
 Frame = +3

Query: 30 RVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
          RV+PM GV R  K  K +P F+GPF+V+E+VG V+YR+ALPP LS +H VF
Sbjct: 3  RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVF 155


>BP046863 
          Length = 580

 Score = 49.7 bits (117), Expect = 9e-08
 Identities = 31/78 (39%), Positives = 48/78 (60%), Gaps = 1/78 (1%)
 Frame = +1

Query: 4   SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRA-LKCRKSTPCFVGPFDVIEKVGV 62
           +Q + ++  +K R+ ++YQVG+ VFL++ P      A  K +K +P F GPF V+E+V  
Sbjct: 328 AQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQKLSPRFYGPFKVLERVVQ 507

Query: 63  VAYRIALPPSLSNLHDVF 80
           VAY + L  S S +H VF
Sbjct: 508 VAY*LDL-XSESRVHPVF 558


>TC16686 similar to UP|Q93Z54 (Q93Z54) AT3g15460/MJK13_12, partial (11%)
          Length = 417

 Score = 26.9 bits (58), Expect = 0.65
 Identities = 8/11 (72%), Positives = 11/11 (99%)
 Frame = +3

Query: 47  TPCFVGPFDVI 57
           +PCF+GPFDV+
Sbjct: 195 SPCFIGPFDVV 227


>BP085845 
          Length = 464

 Score = 25.4 bits (54), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 42  KCRKSTPCFVGPFDVIEKVGVVAY 65
           K RK+    +GPF ++E V ++AY
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY 350


>TC15734 
          Length = 656

 Score = 25.0 bits (53), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 5   QSRQKSYHDKRRKDIEYQVGDHVFL 29
           +++++  H+K RK+IEY  G  V L
Sbjct: 572 ENKKEPKHNKERKNIEYNQGRSVVL 498


>TC13302 
          Length = 533

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 21/71 (29%), Positives = 30/71 (41%), Gaps = 11/71 (15%)
 Frame = -2

Query: 4   SQSRQKSYHDKRRKDIEYQVGDHV-----------FLRVNPMTGVGRALKCRKSTPCFVG 52
           +Q RQ+  H   R+DI+  VGD V           + RVN            K  P F G
Sbjct: 262 NQMRQQVRH---RRDIQLHVGDMV*SNNPTL*TRAYQRVN-----------HKLCPRFYG 125

Query: 53  PFDVIEKVGVV 63
             +++EK+  V
Sbjct: 124 THEMVEKINPV 92


>AV780082 
          Length = 548

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 43 CRKSTPCFVGPFDV 56
          CR+STP + G FDV
Sbjct: 49 CRESTPIYQGCFDV 8


>TC19035 UP|Q84LL5 (Q84LL5) Cullin 4, partial (14%)
          Length = 305

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 22 QVGDHVFLRVNPMT 35
          Q+GDH FLRVN  T
Sbjct: 67 QLGDHRFLRVNRST 26


>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
           partial (89%)
          Length = 973

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = +2

Query: 29  LRVNPMTGVGRALKCRKSTPCF 50
           LR+    GV R L+CR+  P F
Sbjct: 188 LRLLVQAGVDRRLRCRQVQPAF 253


>TC14981 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (11%)
          Length = 677

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 30 RVNPMTGVGRALKCRKSTPCF 50
          R +  + +G  + CR STP F
Sbjct: 66 RTSASSSLGHTISCRHSTPAF 128


>TC8310 UP|Q9SPM8 (Q9SPM8) Nod factor binding lectin-nucleotide
           phosphohydrolase, complete
          Length = 1489

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = +1

Query: 46  STPCFVGPFDVIEKVGVVAYRIALPPSLSNLH 77
           + PC +  FD         Y+++ P S SNL+
Sbjct: 835 ANPCILAGFDGAYTYSGAEYKVSAPASGSNLN 930


>AV770385 
          Length = 635

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (70%)
 Frame = +3

Query: 12  HDKRRKDIEYQVGDHVFLRVN 32
           H++RRK ++Y +    FLR+N
Sbjct: 90  HNERRKAVKYVILPTRFLRIN 152


>AU251888 
          Length = 324

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 49  CFVGPFDVIEKVGVVAY 65
           C+ GP+ V+ KVG   Y
Sbjct: 246 CYPGPWKVLRKVGSTKY 296


>TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, partial
           (37%)
          Length = 555

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 13/45 (28%), Positives = 19/45 (41%)
 Frame = -1

Query: 11  YHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFD 55
           +H   +K   Y+ G+     + P  GVG  +    S  CFV   D
Sbjct: 216 FHSAHQKHPHYKTGNLCLKLLWPH*GVGLQVPSIGSVHCFVAHHD 82


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,451,097
Number of Sequences: 28460
Number of extensions: 15995
Number of successful extensions: 69
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 85
length of database: 4,897,600
effective HSP length: 61
effective length of query: 24
effective length of database: 3,161,540
effective search space: 75876960
effective search space used: 75876960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)