TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136450.2 + phase: 0 /pseudo
         (198 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV407714                                                               30  0.28
TC15731 similar to UP|Q07526 (Q07526) Protein kinase PSPK-5  (Pr...    25  6.8
BP042623                                                               25  6.8
BP028730                                                               25  8.9
AV766642                                                               25  8.9

>AV407714 
          Length = 424

 Score = 30.0 bits (66), Expect = 0.28
 Identities = 14/30 (46%), Positives = 19/30 (62%)
 Frame = -2

Query: 41  WDILEGGIGDLVVDEEGADVDRRKHTPAQK 70
           +D   GG GDL+VD +GAD +R  H  + K
Sbjct: 111 FDGASGGWGDLIVDLDGADNEREIHVSSIK 22


>TC15731 similar to UP|Q07526 (Q07526) Protein kinase PSPK-5  (Probable
           serine/threonine-protein kinase PK5) , partial (17%)
          Length = 940

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -3

Query: 61  DRRKHTPAQKKLYKKHHTI 79
           D+ K TP+  KL   HHTI
Sbjct: 488 DKNKFTPSMGKLETSHHTI 432


>BP042623 
          Length = 518

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 159 KKSCVASDHVSKILRSLPARWRPKVTAIEETKD 191
           KK  +AS HV+     L    RP++  + ET D
Sbjct: 277 KKQVIASFHVALNCTELDPELRPRMRTVSETLD 179


>BP028730 
          Length = 454

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 37  DEELWDILEGGIGDLVVDE 55
           D   WD ++GG+G+  VD+
Sbjct: 278 DASEWDFVDGGMGEYYVDD 222


>AV766642 
          Length = 342

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 61  DRRKHTPAQKKLYKKHHTIRG-ALVKAIPK 89
           DRR+ T + +  +++HH  RG  LV + PK
Sbjct: 209 DRRQDTESDEYSHRRHHGDRG*LLVSSYPK 120


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,963,153
Number of Sequences: 28460
Number of extensions: 32892
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of query: 198
length of database: 4,897,600
effective HSP length: 86
effective length of query: 112
effective length of database: 2,450,040
effective search space: 274404480
effective search space used: 274404480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)