TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136138.6 - phase: 0 /pseudo
         (339 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP053808                                                               30  0.58
BP084469                                                               28  2.2
TC11538                                                                28  2.9
TC16656 UP|RR19_LOTJA (Q9BBP7) Chloroplast 30S ribosomal protein...    27  3.8
BP032526                                                               27  4.9

>BP053808 
          Length = 462

 Score = 30.0 bits (66), Expect = 0.58
 Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
 Frame = +2

Query: 186 WLRDELGSTIFIQQ-DNARTHINPNDPEF 213
           W  D +  TI+ +     +T+INPNDPEF
Sbjct: 86  WDTDNIPYTIYFENASKEKTNINPNDPEF 172


>BP084469 
          Length = 485

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -1

Query: 251 HYKEAPKTIDELVNAVVKSFENY 273
           HY+E P+ I ELV  V + F +Y
Sbjct: 341 HYRELPQEIQELVGPVPEGFNDY 273


>TC11538 
          Length = 542

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 54  LSMLEGIPHDPMFKSMYNIIHIDEKW 79
           L+ + G PH P+ K +Y IIH+   W
Sbjct: 256 LNSVPGTPHLPLGKILYRIIHLLVDW 333


>TC16656 UP|RR19_LOTJA (Q9BBP7) Chloroplast 30S ribosomal protein S19,
           complete
          Length = 473

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 59  GIPHDPMFKSMYNIIHIDEKWF 80
           G+P+DP+ KS+  + H + +W+
Sbjct: 205 GLPYDPLHKSVNALFHCE*QWY 140


>BP032526 
          Length = 516

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 1/55 (1%)
 Frame = +1

Query: 153 VAGTMETKAITSINRDLIRSFLIEKVLPATKEVWLRD-ELGSTIFIQQDNARTHI 206
           +AG    KA   + RDL R   +   +PAT  V  R+ E G+ + +     R  I
Sbjct: 178 IAGIRLPKAANELRRDLRRGIKVRVAIPATGPVHSREREPGAAVRVLHGKQRRKI 342


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,234,225
Number of Sequences: 28460
Number of extensions: 67091
Number of successful extensions: 403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of query: 339
length of database: 4,897,600
effective HSP length: 91
effective length of query: 248
effective length of database: 2,307,740
effective search space: 572319520
effective search space used: 572319520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)