TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134322.23 + phase: 0 
         (150 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8077 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloroplast...   211  4e-56
TC8076 similar to UP|FER2_ARATH (O04090) Ferredoxin 2, chloropla...   204  4e-54
TC17737 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloro...   154  5e-39
TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precur...    32  0.036
AU240099                                                               27  2.0
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1...    25  4.3
AV779044                                                               25  4.3
TC13062 similar to UP|Q889K7 (Q889K7) MaoC-like domain protein, ...    25  5.7
TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger pro...    25  5.7
AV774800                                                               24  9.7
BP043877                                                               24  9.7
TC12524 similar to UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kina...    24  9.7
BP029811                                                               24  9.7

>TC8077 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloroplast
           precursor, partial (81%)
          Length = 703

 Score =  211 bits (537), Expect = 4e-56
 Identities = 112/154 (72%), Positives = 120/154 (77%), Gaps = 4/154 (2%)
 Frame = +1

Query: 1   MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSG----FGLKSKTGKRGDLAVAMATY 56
           MATTPAL GT V+TSFLRRQP+        KAFP+     FGLKS  G R    V MA Y
Sbjct: 76  MATTPALSGTMVNTSFLRRQPL--------KAFPNVGQALFGLKSGCGGR----VTMAAY 219

Query: 57  KVKLVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSF 116
           KVKL+TPEG  EF+CP DVYILDHAEE GID+PYSCRAGSCSSCAGKV  G VDQSDGSF
Sbjct: 220 KVKLITPEGPFEFECPDDVYILDHAEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSF 399

Query: 117 LDDDQIEEGWVLTCVAYPTSDVTIETHKEEELTA 150
           LDDDQI+ G+VLTCVAYP SDV IETHKEEELTA
Sbjct: 400 LDDDQIDAGFVLTCVAYPQSDVVIETHKEEELTA 501


>TC8076 similar to UP|FER2_ARATH (O04090) Ferredoxin 2, chloroplast
           precursor, partial (78%)
          Length = 717

 Score =  204 bits (520), Expect = 4e-54
 Identities = 109/153 (71%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
 Frame = +2

Query: 1   MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSG----FGLKSKTGKRGDLAVAMATY 56
           MAT PA  G  VSTSFLRRQP+         AFP+     FG+K   G RG   V MA Y
Sbjct: 32  MATAPAFSGATVSTSFLRRQPVA--------AFPNVGQVMFGVKG--GSRGG-RVTMAAY 178

Query: 57  KVKLVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSF 116
           KVKL+TPEG QEF+CP DVYILD AEEVGID+PYSCRAGSCSSCAGKV  GAVDQSDGSF
Sbjct: 179 KVKLITPEGPQEFECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSF 358

Query: 117 LDDDQIEEGWVLTCVAYPTSDVTIETHKEEELT 149
           LDDDQ+E G+VLTCVAYP SDV IETHKEEELT
Sbjct: 359 LDDDQVEGGFVLTCVAYPKSDVVIETHKEEELT 457


>TC17737 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
           precursor (Fd III), partial (72%)
          Length = 736

 Score =  154 bits (390), Expect = 5e-39
 Identities = 76/127 (59%), Positives = 96/127 (74%), Gaps = 1/127 (0%)
 Frame = +2

Query: 23  PVSISTTTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHA 81
           P+S  +  K+    FGLKS T  R     AMA YK+KLV P+G + EF+   DVYILD A
Sbjct: 149 PISFGSV-KSVSRSFGLKSSTPSR---VTAMAAYKIKLVGPDGKENEFEAEDDVYILDAA 316

Query: 82  EEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIE 141
           E  G++LPYSCRAG+CS+CAGK+  G+VDQSDGSFLDD+Q+++G+VLTCV+YPT+D  IE
Sbjct: 317 ENAGVELPYSCRAGACSTCAGKIVTGSVDQSDGSFLDDNQLKDGFVLTCVSYPTADCVIE 496

Query: 142 THKEEEL 148
           THKE EL
Sbjct: 497 THKEGEL 517


>TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precursor ,
           partial (92%)
          Length = 1416

 Score = 32.3 bits (72), Expect = 0.036
 Identities = 18/42 (42%), Positives = 24/42 (56%)
 Frame = +2

Query: 87  DLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVL 128
           D PY+ R G+C     K+AA   + S GS LD+DQI    V+
Sbjct: 716 DYPYTGRDGTCKFDKSKIAASVANFSVGS-LDEDQIAANLVM 838


>AU240099 
          Length = 300

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 14/44 (31%), Positives = 17/44 (37%)
 Frame = +2

Query: 71  CPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDG 114
           C   VY++D     GI  PY      CS C G +        DG
Sbjct: 149 CDKTVYVVDLLTLEGI--PYHKSCFKCSHCKGNLTMSTYSSMDG 274


>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
           (AT3g17100/K14A17_22_), partial (43%)
          Length = 1108

 Score = 25.4 bits (54), Expect = 4.3
 Identities = 15/47 (31%), Positives = 21/47 (43%), Gaps = 2/47 (4%)
 Frame = +2

Query: 95  GSC--SSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVT 139
           G C  SSC+G     AV+  D    D DQI+E         P ++ +
Sbjct: 551 GCC**SSCSGGEGEDAVEHGDSHQPD*DQIQEAAAAAAEEAPAAEAS 691


>AV779044 
          Length = 533

 Score = 25.4 bits (54), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 64  EGTQEFDCPSDVYILDHAEEVGI 86
           E TQEF   SDV+ LD +  VG+
Sbjct: 191 ENTQEFFGSSDVFFLDVSSFVGV 123


>TC13062 similar to UP|Q889K7 (Q889K7) MaoC-like domain protein, partial
           (5%)
          Length = 390

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (71%)
 Frame = -1

Query: 120 DQIEEGWVLTCVAYPTSD 137
           D I  GW+L+C+ YP ++
Sbjct: 114 DVII*GWILSCIQYPQNE 61


>TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger protein 282
           (HTLV-I U5RE binding protein 1) (HUB-1), partial (3%)
          Length = 810

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 13/31 (41%), Positives = 15/31 (47%)
 Frame = +2

Query: 7   LYGTAVSTSFLRRQPMPVSISTTTKAFPSGF 37
           LY TAV +  L   PMP    T  K  P G+
Sbjct: 179 LYITAVESRKLDETPMPAVNGTDEKCAPCGY 271


>AV774800 
          Length = 452

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 71  CPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDD 120
           C + V +L +  +    LPY  R+ S    A  VAA  +D S  S  D+D
Sbjct: 240 CDNGVVVLTNNAK----LPYQIRSASFRISASIVAAVNLDDSGTSESDED 103


>BP043877 
          Length = 526

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 11  AVSTSFLRRQPMPVSISTTTKAFPSGF 37
           AVS  F+   P     STTT+ F  GF
Sbjct: 250 AVSNPFMSLHPAQPVPSTTTRGFSCGF 170


>TC12524 similar to UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kinase 1,
           partial (27%)
          Length = 834

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 83  EVGIDLPYSCRAGSCSSCAGK 103
           E G   P  CR GSC S  GK
Sbjct: 68  E*GYRSPEGCRLGSCCSSRGK 6


>BP029811 
          Length = 481

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 13/47 (27%), Positives = 24/47 (50%)
 Frame = -3

Query: 102 GKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
           GK+    +D ++G+F+DD ++  G     V  P S  ++ T  +  L
Sbjct: 353 GKLLVTDLDSTNGTFIDDKRLRPG-----VISPVSSGSLVTFGDTHL 228


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,510,052
Number of Sequences: 28460
Number of extensions: 32729
Number of successful extensions: 122
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of query: 150
length of database: 4,897,600
effective HSP length: 82
effective length of query: 68
effective length of database: 2,563,880
effective search space: 174343840
effective search space used: 174343840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)