BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134242.10 + phase: 0
(164 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 262 2e-71
BI419822 193 1e-50
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 182 3e-47
AV773507 116 2e-27
TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding p... 111 5e-26
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ... 98 7e-23
TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprote... 93 3e-20
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 91 1e-19
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote... 89 4e-19
TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotei... 86 4e-18
TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, parti... 80 1e-16
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%) 78 7e-16
AV409413 76 3e-15
TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding pr... 76 3e-15
TC19017 similar to UP|Q8S2X6 (Q8S2X6) Glycine-rich RNA binding p... 72 4e-14
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 68 7e-13
BP047377 64 1e-11
TC11829 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, p... 64 1e-11
BP066300 64 1e-11
TC15582 weakly similar to GB|AAO23575.1|27764908|BT003010 At5g60... 63 2e-11
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 262 bits (669), Expect = 2e-71
Identities = 128/169 (75%), Positives = 138/169 (80%), Gaps = 6/169 (3%)
Frame = +1
Query: 2 ASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKS 61
A ADVEYRCFVGGLAW TDS LE+AFS YGEIIDSK++NDRETGRSRGFGFVTF E++
Sbjct: 64 AMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEA 243
Query: 62 MRDAIEGMNGQDMDGRNITVNEAQSR-GSGGGGGRGGGGYGGGG----GGYGGGGRREGG 116
MR AIEGMNG ++DGRNITVNEAQ+R G GGGGGRGGGGYGGGG GGYGGGG G
Sbjct: 244 MRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRG- 420
Query: 117 YNRSSGGGGGYGGGGGGGYGGGRDRGY-GDDGGSRYSRGGGGDGGSWRS 164
GGGGGYGGGGGGGYGG R+ GY GD GGSRY GGGG GG+WRS
Sbjct: 421 ---YGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS 558
>BI419822
Length = 380
Score = 193 bits (491), Expect = 1e-50
Identities = 91/111 (81%), Positives = 103/111 (91%)
Frame = +2
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MASA++E+RCFVGGLAWATD+EALEKAFS YGEI++SK+INDRETGRSRGFGFVTFA E+
Sbjct: 56 MASAEIEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQ 235
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGG 111
+M+DAIE MNGQ++DGRNITVNEAQSRGS GGGGR YGGGGGGYGGGG
Sbjct: 236 AMKDAIEAMNGQNLDGRNITVNEAQSRGSSGGGGR----YGGGGGGYGGGG 376
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 182 bits (462), Expect = 3e-47
Identities = 94/132 (71%), Positives = 103/132 (77%), Gaps = 6/132 (4%)
Frame = +2
Query: 38 KIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGG 97
+++NDRETGRSRGFGFVTFA E+SM+DAIEGMNGQD+DGRN+TVNEAQ+RG GGGG GG
Sbjct: 446 QVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQARGRGGGG--GG 619
Query: 98 GGYGGG--GGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGG 155
GGYGGG GGYGGG GG S GGGGGYGG GGGGYGG R+ G G GGSR GG
Sbjct: 620 GGYGGGRREGGYGGG----GGSRYSGGGGGGYGGSGGGGYGGRREGGGGGYGGSR--EGG 781
Query: 156 GG----DGGSWR 163
GG GGSWR
Sbjct: 782 GGSRYSSGGSWR 817
Score = 77.0 bits (188), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKI 39
MASADVEYRCFVGGLAWATDSE LEKAFS YGEI+DSK+
Sbjct: 53 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKV 169
>AV773507
Length = 496
Score = 116 bits (290), Expect = 2e-27
Identities = 71/164 (43%), Positives = 94/164 (57%), Gaps = 14/164 (8%)
Frame = +2
Query: 6 VEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDA 65
+EYR GGL+W LE AF + G+I++ +I+ +R+TGR RGFGF+TFAD + M DA
Sbjct: 14 IEYR---GGLSWDVTERQLEHAFDRDGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 184
Query: 66 IEGMNGQDMDGRNITVNEAQSRGSGGGGGRG--GGGYGGGGGGYGGGGRREGGYNRSSGG 123
I+ M+G+++ R I+VN+AQ + G +G GGGY GG G G G R G + G
Sbjct: 185 IKEMHGREIGDRIISVNKAQPKMGGDDADQGYRGGGYSSGGRGSYGAGDRVGQDDCFECG 364
Query: 124 GGGY--------GGGGGGGYGGG----RDRGYGDDGGSRYSRGG 155
G+ GGGGG G GGG R R YG GG GG
Sbjct: 365 RPGHRARDCPLAGGGGGRGRGGGSLSSRPR-YGGSGGHGDRLGG 493
>TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (88%)
Length = 683
Score = 111 bits (278), Expect = 5e-26
Identities = 57/116 (49%), Positives = 80/116 (68%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ D ++LE AFS +G + ++++I DR+TGRSRGFGFV+F E+S A+
Sbjct: 187 KLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSS 366
Query: 69 MNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGG 124
M+GQD++GRNI V+ A R + G RGGGGY G GGGYG +R+SGGG
Sbjct: 367 MDGQDLNGRNIRVSYANDRPA---GPRGGGGY-GTGGGYG---------DRNSGGG 495
>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(58%)
Length = 881
Score = 97.8 bits (242), Expect(2) = 7e-23
Identities = 53/124 (42%), Positives = 76/124 (60%)
Frame = +2
Query: 16 AWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMD 75
AW+T L+ AF ++G++ ++K++ D+ +GRSRGFGFVTF D+K+M +AI+ MNG D+D
Sbjct: 80 AWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLD 259
Query: 76 GRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGY 135
GR ITV++AQ +GS G Y G G R+ RS G GG G GG +
Sbjct: 260 GRTITVDKAQPQGSSRDRD-DGDRYRERGRDRDDRGDRD----RSRGYGGSRGSNGGECF 424
Query: 136 GGGR 139
G+
Sbjct: 425 KCGK 436
Score = 42.0 bits (97), Expect = 5e-05
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 93 GGRGGGGYGG-----GGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G RGGG YGG GGGYG + +RSSGG GG G G DR + D
Sbjct: 471 GKRGGGRYGGRESRXSGGGYG----PDRNADRSSGGRSSRDGGSHG--DSGSDRYHRDRS 632
Query: 148 GSRYSRGGGG 157
G RG G
Sbjct: 633 GPYERRGSSG 662
Score = 38.1 bits (87), Expect = 8e-04
Identities = 27/67 (40%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +3
Query: 87 RGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGY--- 143
RG G GGR GGG G R GG RSS GG +G G Y R Y
Sbjct: 477 RGGGRYGGRESRXSGGGYGPDRNADRSSGG--RSSRDGGSHGDSGSDRYHRDRSGPYERR 650
Query: 144 GDDGGSR 150
G GG R
Sbjct: 651 GSSGGYR 671
Score = 32.0 bits (71), Expect = 0.055
Identities = 23/48 (47%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Frame = +3
Query: 128 GGGGGGGYGGGRDR----GYGDD------GGSRYSRGGG--GDGGSWR 163
G GGG YGG R GYG D G R SR GG GD GS R
Sbjct: 471 GKRGGGRYGGRESRXSGGGYGPDRNADRSSGGRSSRDGGSHGDSGSDR 614
Score = 24.3 bits (51), Expect(2) = 7e-23
Identities = 8/9 (88%), Positives = 9/9 (99%)
Frame = +3
Query: 7 EYRCFVGGL 15
EYRCF+GGL
Sbjct: 54 EYRCFIGGL 80
>TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprotein,
chloroplast precursor (28RNP), partial (34%)
Length = 637
Score = 92.8 bits (229), Expect = 3e-20
Identities = 40/84 (47%), Positives = 59/84 (69%)
Frame = +1
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A +R +VG L W D+ LE+ FS++G+++ ++++ DRETGRSRGFGFVT +DE +
Sbjct: 28 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 207
Query: 64 DAIEGMNGQDMDGRNITVNEAQSR 87
DAI ++GQ + GR I VN A+ R
Sbjct: 208 DAIAALDGQSLGGRTIRVNVAEDR 279
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 90.5 bits (223), Expect = 1e-19
Identities = 57/136 (41%), Positives = 66/136 (47%), Gaps = 25/136 (18%)
Frame = +3
Query: 49 RGFGFVT--------FADEKSMR----------DAIEGMNGQDMDGRNITVNEAQSRGSG 90
+GFGF+T F + ++ + +E + D DGR + G
Sbjct: 81 KGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRAKAIEVTGPNGQA 260
Query: 91 GGGGRGGGGYGGGG---GGYGGGGRREGGYNRSSGGGGGYGGGGG----GGYGGGRDRGY 143
G R GGG GGGG GGYGGGG GGY GGGGYGGGGG GGYGGG G
Sbjct: 261 VQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGG 440
Query: 144 GDDGGSRYSRGGGGDG 159
G GG RGGGG G
Sbjct: 441 GGRGG---GRGGGGGG 479
Score = 84.0 bits (206), Expect = 1e-17
Identities = 61/149 (40%), Positives = 68/149 (44%), Gaps = 2/149 (1%)
Frame = +3
Query: 14 GLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIE--GMNG 71
G + T + + F EI K R G F+ +D AIE G NG
Sbjct: 84 GFGFITPDDGGDDLFVHQSEI---KSEGFRCLGEGEDVEFIVASDPDGRAKAIEVTGPNG 254
Query: 72 QDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGG 131
Q + G + G GGGGRGGGGYGGGG YGGGG GGGG GGG
Sbjct: 255 QAVQG-------TRRGGGAGGGGRGGGGYGGGG--YGGGGY---------GGGGRGGGGY 380
Query: 132 GGGYGGGRDRGYGDDGGSRYSRGGGGDGG 160
GGG G G GYG GG GGGG GG
Sbjct: 381 GGGGGYGGSGGYGGGGG----YGGGGRGG 455
>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1602
Score = 89.0 bits (219), Expect = 4e-19
Identities = 41/86 (47%), Positives = 59/86 (67%)
Frame = +3
Query: 2 ASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKS 61
+S+ E R VG LAW D+ ALE F + G ++D+K+I DRE+GRSRGFGFVTF+
Sbjct: 720 SSSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDE 899
Query: 62 MRDAIEGMNGQDMDGRNITVNEAQSR 87
+ AI ++G D++GR I V++A S+
Sbjct: 900 VNSAIRSLDGADLNGRAIKVSQADSK 977
Score = 72.8 bits (177), Expect = 3e-14
Identities = 43/140 (30%), Positives = 64/140 (45%)
Frame = +3
Query: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
+++ FVG L ++ DS L + F G + ++I D+ TG SRGF FVT + A
Sbjct: 342 DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEAAA 521
Query: 67 EGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGG 126
+ N +++GR + VN SG G+ + GG + GG G
Sbjct: 522 QQFNNYELEGRALRVN------SGPPPKNENRGF-NENPRFRNNSFNRGGSDSYRGGSDG 680
Query: 127 YGGGGGGGYGGGRDRGYGDD 146
Y GGG GY GG Y ++
Sbjct: 681 YRGGGSDGYRGGGSSSYSEN 740
>TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotein,
chloroplast precursor, partial (28%)
Length = 717
Score = 85.5 bits (210), Expect = 4e-18
Identities = 39/88 (44%), Positives = 57/88 (64%)
Frame = +3
Query: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSM 62
S D +VG L W+ D+ LE+ F ++G + +++I+ DRETGRSRGFGFVT + E +
Sbjct: 63 SRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADI 242
Query: 63 RDAIEGMNGQDMDGRNITVNEAQSRGSG 90
AI ++GQ +DGR I V+ A+ R G
Sbjct: 243 NGAIAALDGQSLDGRTIRVSVAEGRSGG 326
>TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, partial (39%)
Length = 688
Score = 80.5 bits (197), Expect = 1e-16
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 14/117 (11%)
Frame = -1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFAD-EKSMRDAIE 67
+ FVGGLAW T E ++K F Q+G+I+++ +I D+ TGRS+G+GFVTF + E +MR ++
Sbjct: 358 KVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVD 179
Query: 68 GMNGQDMDGRNITVNEA-----QSRGS----GGGGGRG----GGGYGGGGGGYGGGG 111
+DGR N A +S+ S GG GR GGGGG+GG G
Sbjct: 178 A--APVIDGRRANCNLASLGVQRSKPSTPKQHGGAGRNFRVMSSFQTGGGGGFGGVG 14
>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
Length = 562
Score = 78.2 bits (191), Expect = 7e-16
Identities = 48/116 (41%), Positives = 64/116 (54%)
Frame = +2
Query: 45 TGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGG 104
+G +GF ++ F+D S+ A+E ++ D+ G + V+EA+ R + G GGR GGG GG
Sbjct: 2 SGNXKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGG- 175
Query: 105 GGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGG 160
G GGR + G GG G +G GG GG GGR GGS GGGG GG
Sbjct: 176 ---GRGGRFDSG---RGGGRGRFGSGGRGGDRGGR-------GGS----GGGGRGG 292
>AV409413
Length = 422
Score = 76.3 bits (186), Expect = 3e-15
Identities = 44/135 (32%), Positives = 65/135 (47%), Gaps = 15/135 (11%)
Frame = +2
Query: 12 VGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNG 71
VGG+ + + L+ FS+YG++++ +II D T RSRGFGF+ F +EK + + N
Sbjct: 2 VGGIPTSVSEDELKGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDTILTDGNM 181
Query: 72 QDMDGRNITVNEAQSRGSGGGG--------------GRGGGGYGGGGGGYGGGGRREGGY 117
DM G + + +A+ + S G G G+ G +G GG G Y
Sbjct: 182 IDMAGTQVEIKKAEPKKSSNSGSLPPFASDSRPRSYNDGFSGFADSYGSFGSGGYGPGSY 361
Query: 118 NRSSGGG-GGYGGGG 131
GG G YGG G
Sbjct: 362 RSLYGGRLGDYGGYG 406
>TC16457 similar to UP|Q41124 (Q41124) Chloroplast RNA binding protein
precursor, partial (30%)
Length = 655
Score = 76.3 bits (186), Expect = 3e-15
Identities = 32/87 (36%), Positives = 57/87 (64%)
Frame = +2
Query: 5 DVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRD 64
+ E++ FVG L+W SE+L + F +YG ++ ++++ D ETGRSRG+GFV ++ +
Sbjct: 5 ETEHKLFVGNLSWTVTSESLIQVFPEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 184
Query: 65 AIEGMNGQDMDGRNITVNEAQSRGSGG 91
A+ +N +++GR I V+ A+ + S G
Sbjct: 185ALISLNNVELEGRAIRVSLAEGKRS*G 265
>TC19017 similar to UP|Q8S2X6 (Q8S2X6) Glycine-rich RNA binding protein
(Fragment), partial (26%)
Length = 320
Score = 72.4 bits (176), Expect = 4e-14
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Frame = +2
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQY----GEIIDSKIINDRETGRSRGFGFVTFADE 59
+D R FVG L+W T E++ AF G ++DSK+I DRETGRSRGFGFVTF+
Sbjct: 92 SDPGCRLFVGNLSWNTTDESMRMAFEDGAGVPGSVLDSKVILDRETGRSRGFGFVTFSSP 271
Query: 60 KSMRDAIEGMNGQDMD 75
AI MNG D+D
Sbjct: 272 DLASAAIAKMNGMDVD 319
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 68.2 bits (165), Expect = 7e-13
Identities = 44/95 (46%), Positives = 46/95 (48%), Gaps = 28/95 (29%)
Frame = -1
Query: 87 RGSGGG--GGRGGGGYGGGGGGYGGGGR-------------------------REGGYNR 119
RG GG GGRGGG GGGG GYGGGGR ++GG
Sbjct: 341 RGYGGPPQGGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGG 162
Query: 120 SSGGGGGYGGGGGGGYGG-GRDRGYGDDGGSRYSR 153
SGGGGGYGGGGG G GG G RG G SR
Sbjct: 161 YSGGGGGYGGGGGRGGGGMGSGRGVSPSHGGPPSR 57
Score = 64.7 bits (156), Expect = 8e-12
Identities = 45/96 (46%), Positives = 47/96 (48%), Gaps = 19/96 (19%)
Frame = -1
Query: 84 AQSRGSGGGGGRGGGGYGGG-----GGGYGGGGRREGGYNRSSGGGGGYGGGGGGG---- 134
A + G GG G +GG GYGG GGGYGGGG G GYGGGG GG
Sbjct: 383 AAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGG------------GPGYGGGGRGGHGVP 240
Query: 135 ---YGG-----GRDRGYGDDGGSR--YSRGGGGDGG 160
YGG GR RG G R YS GGGG GG
Sbjct: 239 QQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGG 132
>BP047377
Length = 564
Score = 64.3 bits (155), Expect = 1e-11
Identities = 32/103 (31%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Frame = +3
Query: 1 MASADVEYRC-FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADE 59
MAS+ ++RC FVG + + E L + + G ++ +++ DRETG+ +G+GF + DE
Sbjct: 105 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 284
Query: 60 KSMRDAIEGMNGQDMDGRNITVNEAQS-RGSGGGGGRGGGGYG 101
++ A + G +++GR + V+ A++ +G+ +G GG G
Sbjct: 285 ETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 413
>TC11829 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, partial (4%)
Length = 738
Score = 63.9 bits (154), Expect = 1e-11
Identities = 31/74 (41%), Positives = 46/74 (61%)
Frame = +1
Query: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
++G L + + L + F Q+GEI+ +K+I DR TG S+G+GFV +AD +AI MN
Sbjct: 226 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 405
Query: 71 GQDMDGRNITVNEA 84
G ++GR I V A
Sbjct: 406 GYRLEGRTIAVRVA 447
Score = 31.6 bits (70), Expect = 0.071
Identities = 21/44 (47%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Frame = -2
Query: 103 GGGG-----YGGGGRREGGYNRSSGGGGG---YGGGGGGGYGGG 138
GGGG G G GGY GGGG YGGG GG +G G
Sbjct: 737 GGGG**TP*GGIG*PCIGGYIVDPGGGGA*GAYGGGTGGAHGTG 606
Score = 27.3 bits (59), Expect = 1.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 92 GGGRGGGGYGGGGGGYGGGG 111
GGG G YGGG GG G G
Sbjct: 665 GGGGA*GAYGGGTGGAHGTG 606
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Frame = -2
Query: 125 GGY-----GGGGGGGYGGGRDRGYG 144
GGY GGG G YGGG +G
Sbjct: 686 GGYIVDPGGGGA*GAYGGGTGGAHG 612
>BP066300
Length = 420
Score = 63.9 bits (154), Expect = 1e-11
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = -3
Query: 14 GLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQD 73
GL++ T E+L F +G+++D ++ D+ R RGF F+ +A E+ + AIEGM+G+
Sbjct: 415 GLSFRTTEESLRNCFKNFGQLVDVXLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKF 236
Query: 74 MDGRNITVNEAQSR 87
+DGR I V A+ R
Sbjct: 235 LDGRVIFVEVAKPR 194
>TC15582 weakly similar to GB|AAO23575.1|27764908|BT003010
At5g60980/MSL3_100 {Arabidopsis thaliana;}, partial
(16%)
Length = 1053
Score = 63.2 bits (152), Expect = 2e-11
Identities = 47/157 (29%), Positives = 67/157 (41%)
Frame = +3
Query: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSM 62
+A + FV L E LE+AF ++G I + I + FGFV F SM
Sbjct: 228 NAGKAHAIFVANLPMNATVEQLERAFVEFGPIKTNGIQVRSNKQQGSCFGFVEFESAASM 407
Query: 63 RDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG 122
+ A+E +D R +++ E ++ G GGY R + R +
Sbjct: 408 QSALEA--AVILDNRRLSIEERRANNDRARYPSGRGGYRND--------RNDSFRGRGNF 557
Query: 123 GGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDG 159
GGG +GGG GGGY G D ++ R RGG G
Sbjct: 558 GGGNFGGGRGGGYNGRNDFERRNEFSGR-PRGGNNMG 665
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.144 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,502,313
Number of Sequences: 28460
Number of extensions: 58738
Number of successful extensions: 11314
Number of sequences better than 10.0: 999
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5741
length of query: 164
length of database: 4,897,600
effective HSP length: 83
effective length of query: 81
effective length of database: 2,535,420
effective search space: 205369020
effective search space used: 205369020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC134242.10