BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC131249.9 - phase: 0 /pseudo
(421 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI418928 36 0.014
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 35 0.023
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 35 0.030
AV780663 32 0.26
BP085186 31 0.34
BP049555 31 0.34
TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%) 30 0.57
BF177499 30 0.57
BP031757 30 0.57
AV415023 29 1.3
AV413583 29 1.3
TC18970 weakly similar to UP|Q8I8F0 (Q8I8F0) Chromosome scaffold... 29 1.3
BP038960 29 1.3
TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY ... 28 2.2
TC12570 28 2.2
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 28 2.2
TC17342 similar to PIR|JC7226|JC7226 endo-1,3(4)-beta-glucanase ... 28 2.2
TC9438 weakly similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-ind... 28 2.2
AV777167 28 2.8
TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-l... 28 2.8
>BI418928
Length = 496
Score = 35.8 bits (81), Expect = 0.014
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERK 263
+RRS+ RK+ + RK+KKR RKR++RK
Sbjct: 289 RRRSRRRNRKLTIKSRKKKKRNPMRKRRKRK 381
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 35.0 bits (79), Expect = 0.023
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 14/53 (26%)
Frame = +1
Query: 235 RSKENERKICARKRKRKK--------------RKRNRKRKERKFHGKKRRNKK 273
+ K N+RK +KRKR+K RK RK+K RK KKRR +K
Sbjct: 31 KRKRNQRKKNPKKRKRRKMSQRVKNPRKKRRRRKSPRKKKRRKMKRKKRRKRK 189
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 234 RRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+R K +K RK RKK++R KRK+R+ K++ N+
Sbjct: 91 QRVKNPRKKRRRRKSPRKKKRRKMKRKKRR---KRKSNQ 198
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRK 260
KRR +++ RK RK KRKKR++ + +
Sbjct: 115 KRRRRKSPRKKKRRKMKRKKRRKRKSNQ 198
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 34.7 bits (78), Expect = 0.030
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +2
Query: 219 WEKNYSCTIES**CKRRSKENERKICARKRKRK-KRKRNRKRKERKFHGKKRR 270
W + T +S K+ K+ RK RKRKR+ K+K+ +K+K+RK+ K+RR
Sbjct: 176 WRLRFKSTKKS--KKK*RKKWRRKKKRRKRKRRVKKKKKKKKKKRKWKRKRRR 328
Score = 32.3 bits (72), Expect = 0.15
Identities = 14/39 (35%), Positives = 26/39 (65%)
Frame = +2
Query: 235 RSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
+S + +K +K +RKK++R RKR+ +K KK++ +K
Sbjct: 191 KSTKKSKKK*RKKWRRKKKRRKRKRRVKKKKKKKKKKRK 307
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKER 262
K+R K R +K+K+KKRK RKR+ +
Sbjct: 242 KKRRKRKRRVKKKKKKKKKKRKWKRKRRRK 331
>AV780663
Length = 568
Score = 31.6 bits (70), Expect = 0.26
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 246 RKRKRKKRKRNRKRKERKFHGKKR 269
R+R+RK+RKR +R ER+ GK+R
Sbjct: 124 RRRRRKRRKRGVRRSEREEKGKRR 53
>BP085186
Length = 388
Score = 31.2 bits (69), Expect = 0.34
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 246 RKRKRKKRKRNRKRKERKFHGKKRRNKKC 274
R+R+R++R+R R+R+ + G+K KC
Sbjct: 248 RRRRRRRRRRRRRRRRSRTRGRKE*RGKC 162
>BP049555
Length = 555
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = +3
Query: 233 KRRSKENER-KICARKRKRKKRKRN-------RKRKERKFHGKKRRNKKCHCHQAAPIF 283
+++++ N R K RKR+RKK+++ RKR+ RK K+RR KK HQ F
Sbjct: 231 RKQNRNNLRLKPSQRKRQRKKQRKKQRKSLQLRKRRRRKSQ-KRRRRKKSLNHQLHVFF 404
>TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%)
Length = 5664
Score = 30.4 bits (67), Expect = 0.57
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKR-RNKK 273
K++ + + + RK KRK KR K K+++ GKK RN++
Sbjct: 2191 KKKERIKKLGLYGRKSKRKSEKRRGKNKKKRKRGKKTYRNRR 2316
>BF177499
Length = 316
Score = 30.4 bits (67), Expect = 0.57
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -2
Query: 233 KRRSKENERK---ICARKRKRKKRKRNRKRKERK 263
K R +E ERK + R+RKRK+RK+ RKR K
Sbjct: 132 KIRERERERKKIRLV*RERKRKERKKERKRSFSK 31
Score = 28.5 bits (62), Expect = 2.2
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 234 RRSKENERKICARKRKRKKRK---RNRKRKERKFHGKKRRNK 272
RR + E KI R+R+RKK + R RKRKERK K+ +K
Sbjct: 153 RRGRAIE-KIRERERERKKIRLV*RERKRKERKKERKRSFSK 31
>BP031757
Length = 507
Score = 30.4 bits (67), Expect = 0.57
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRK 260
KRR + + RKRK+KK KRNR R+
Sbjct: 207 KRRRRRRKSPGRRRKRKKKKNKRNRNRR 290
>AV415023
Length = 385
Score = 29.3 bits (64), Expect = 1.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 232 CKRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
C+RR + RKI +R RK K+ R+ +E + K++R ++
Sbjct: 177 CQRRPSRDRRKIQSRGRKHKRSMIYRRIREME*MKKRQRERE 52
>AV413583
Length = 429
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 4/41 (9%)
Frame = -1
Query: 234 RRSKENERK-ICARKR---KRKKRKRNRKRKERKFHGKKRR 270
RRS E +RK + A +R + KKR R+ R++ + GK+RR
Sbjct: 165 RRSAETKRKKVMAAERMTSEEKKRPRDESRRDGRRRGKRRR 43
>TC18970 weakly similar to UP|Q8I8F0 (Q8I8F0) Chromosome scaffold protein
p85, partial (4%)
Length = 562
Score = 29.3 bits (64), Expect = 1.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 234 RRSKENERKICARK---RKRKKRKRNRKRKERKFHGKKRRNKKCH 275
R+ + RK RK R RKK R RK+K R+ KKR++ C+
Sbjct: 118 RQGSQK*RKSRTRKKW*RTRKKW*RRRKKKPRRKRVKKRKSDVCN 252
>BP038960
Length = 524
Score = 29.3 bits (64), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 244 CARKRKRKKRKRNRKRKER 262
C R R+R+KRKR R+R+ R
Sbjct: 167 CCRWRRRRKRKRKRRRRRR 223
>TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY PROTEIN,
partial (5%)
Length = 528
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = +3
Query: 234 RRSKENERKICARKRKRKKRKRNRKRKERKFHGKKR 269
RRSK +R+ C R +R++ KR R+ R HG KR
Sbjct: 129 RRSKR*KRRGCLRWSRRRRSKRRRRV*SR--HGGKR 230
>TC12570
Length = 718
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 246 RKRKRKKRKRNRKRK 260
R +KRKKRKR RKRK
Sbjct: 523 RNKKRKKRKRKRKRK 567
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 247 KRKRKKRKRNRKRKERKFHGKKRRNKK 273
+RKR++RKR R ++ K+H + RR K
Sbjct: 80 RRKRRRRKRRRTKRMVKWHLQMRRKLK 160
>TC17342 similar to PIR|JC7226|JC7226 endo-1,3(4)-beta-glucanase - garden
pea {Pisum sativum;} , partial (24%)
Length = 499
Score = 28.5 bits (62), Expect = 2.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 241 RKICARKRKRKKRKRNRKR 259
++ C R++K KKRKR RKR
Sbjct: 100 KRSCNREKKEKKRKRKRKR 44
>TC9438 weakly similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-inducing
like, partial (95%)
Length = 788
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 239 NERKICARKRKRKKRKRNRKRKERK-----FHGKKRRNKKCHC 276
N IC +R +++ KR R RKE+K + ++R++ C C
Sbjct: 136 NS*NICHAERMKREAKRTRPRKEKKPIAR*WSCRRRKSGCCSC 8
>AV777167
Length = 475
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 16/17 (93%)
Frame = -2
Query: 245 ARKRKRKKRKRNRKRKE 261
+RK+KRK++KR ++RKE
Sbjct: 459 SRKKKRKRKKREKRRKE 409
>TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-like,
partial (44%)
Length = 722
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 245 ARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
ARK R++ +RK + G + ++KCH H A
Sbjct: 312 ARKGSRRETPHRERRKNLERKGSNQ*SQKCHSHYPA 205
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.385 0.173 0.749
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,339,078
Number of Sequences: 28460
Number of extensions: 98420
Number of successful extensions: 2586
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 1671
length of query: 421
length of database: 4,897,600
effective HSP length: 93
effective length of query: 328
effective length of database: 2,250,820
effective search space: 738268960
effective search space used: 738268960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC131249.9