TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130803.17 + phase: 0 
         (532 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partia...    29  1.7
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot...    29  2.2
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,...    28  2.8
TC18660                                                                27  6.3
TC11869                                                                27  8.2
TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2...    27  8.2
TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activati...    27  8.2

>TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partial (39%)
          Length = 751

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 11/89 (12%)
 Frame = -2

Query: 348 SKPINLATS---------PEFFFYTNAPTGQRKAFMDAWSKVRRKSVKHLGVRSGVAHEA 398
           S P++ +TS         P  +  T +   Q+KAF + WS V       +    GV H  
Sbjct: 456 SNPLSFSTSSSVVASVPKPNAWILT*SVRFQQKAFPNIWSTVSETPSSTMPTTDGVEHVR 277

Query: 399 YTQWVIDRAEEIGM--PYPAMRYVSSSTP 425
           +  +    +       P+P  R   SSTP
Sbjct: 276 WFSFSFSFSHAFAFDDPFPRERTRRSSTP 190


>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
          Length = 1794

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 40/138 (28%), Positives = 57/138 (40%), Gaps = 6/138 (4%)
 Frame = +1

Query: 379  KVRRKSVKHLGVRSGVAH-----EAYTQWVIDRAEEIG-MPYPAMRYVSSSTPSIPLPLL 432
            ++R    K LG  +G A      EAY +   DR +  G +  PA  Y  S+   I     
Sbjct: 1312 RLRNLEGKELGRFAGSAKGKPKIEAYDK---DRKKGAGGLITPAKTYNPSADAVISQKSD 1482

Query: 433  PATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKEL 492
             A  +   E  A +  EK+  K +  + E   + L   DE    E  ++KKE  K RKE 
Sbjct: 1483 SAMDEDTHEPSADKKKEKKEKKKKKEKNEEKDVPLLA-DEDGDEEKEVVKKEKKKKRKES 1659

Query: 493  EEKDELLLRDSKRAKGRR 510
             E  EL   D    K ++
Sbjct: 1660 TENVELQNGDDAGEKKKK 1713


>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
           (74%)
          Length = 1591

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 252 RTLKG-RGYILCCISLLYRWFISHLP 276
           R LK  RG++ CC    + WF+S LP
Sbjct: 42  RVLKSKRGFLCCCCWEFFSWFLSPLP 119


>TC18660 
          Length = 893

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = +2

Query: 408 EEIGMPYPAMRYVSSSTPSIPLP 430
           E   MP P+M ++S +TP + LP
Sbjct: 800 EAFDMPTPSMEWISGTTPHLKLP 868


>TC11869 
          Length = 753

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (45%)
 Frame = +1

Query: 209 LLIYGLILFPNLDNFVDMNAIEVFHSKNPVPTLLADTYHAIHD 251
           LL+ G  +      FV    ++V H    +PTLLA    A+ D
Sbjct: 7   LLLPGQSVLVETSGFVIQQTLQVAHMVTVIPTLLASRVAAVSD 135


>TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2  , partial
           (15%)
          Length = 472

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 15/51 (29%), Positives = 21/51 (40%)
 Frame = +1

Query: 220 LDNFVDMNAIEVFHSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRW 270
           L  FV    + +F      P L    YH IH   L+    +L   S+L+ W
Sbjct: 172 LKGFVRCFFLPLFQLITEPPLLQNSEYHRIHFEMLRCSQDVLALFSILWNW 324


>TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activation domain
            interacting protein PTIP, partial (3%)
          Length = 1502

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -1

Query: 467  LDGRDEQKTHENLMLKKELAKARKELEEK 495
            L  +DEQ TH+NL   K ++   +E+  K
Sbjct: 1193 LSPKDEQTTHQNLNFSKHVSHLAREITTK 1107


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,380,575
Number of Sequences: 28460
Number of extensions: 114430
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of query: 532
length of database: 4,897,600
effective HSP length: 95
effective length of query: 437
effective length of database: 2,193,900
effective search space: 958734300
effective search space used: 958734300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)