BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130803.10 - phase: 0
(289 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW428883 96 9e-21
TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 90 4e-19
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 87 3e-18
TC15728 similar to AAS09986 (AAS09986) MYB transcription factor,... 86 7e-18
TC12162 similar to AAS09999 (AAS09999) MYB transcription factor,... 85 1e-17
TC9473 similar to AAS09986 (AAS09986) MYB transcription factor, ... 83 5e-17
TC14128 similar to AAS09980 (AAS09980) MYB transcription factor,... 75 1e-14
TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription fa... 45 1e-05
TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 42 2e-04
AV413379 37 0.005
AV408163 36 0.007
TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%) 35 0.015
TC20215 similar to AAS10104 (AAS10104) MYB transcription factor,... 35 0.019
TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%) 34 0.025
AV417320 34 0.033
TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete 33 0.057
NP675423 transcription factor MYB101 [Lotus japonicus] 33 0.074
NP675421 transcription factor MYB103 [Lotus japonicus] 33 0.074
TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, ... 32 0.13
CB828977 32 0.13
>AW428883
Length = 430
Score = 95.5 bits (236), Expect = 9e-21
Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
Frame = +1
Query: 78 NSNENNLIQAESVPEESHAPRKG-HWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPT 136
NS N+ +A +E RKG WTE+EH+LFL GL K+GKG W+ IS+ FVVT+TPT
Sbjct: 73 NSESNHGTKASRSDQER---RKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPT 243
Query: 137 QIASHAQKYFIHQNVKDIEKKEKKRKSIHD-TTLNKND 173
Q+ASHAQKYFI N + K+++R SIHD T++N D
Sbjct: 244 QVASHAQKYFIRLNSMN---KDRRRSSIHDITSVNNGD 348
>TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(40%)
Length = 601
Score = 90.1 bits (222), Expect = 4e-19
Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Frame = +3
Query: 68 NSNDNSVETLNSNENNLIQAESVPEESHAPRKGH--WTEDEHKLFLKGLKKHGKGCWKDI 125
++N+N+ NSN ++I A+ ++ AP WTE+EHKLFL GL+K GKG W+ I
Sbjct: 243 DANNNN----NSNNKDVIAADYASADNAAPPSSGVPWTEEEHKLFLVGLQKVGKGDWRGI 410
Query: 126 SKEFVVTKTPTQIASHAQKYFIHQNVKDIEKKEKKRKSIHDTTLNKNDTLVTVAVEQ 182
S+ +V T+TPTQ+ASHAQKYF+ ++ + + ++R S+ D T DT+ + VE+
Sbjct: 411 SRNYVKTRTPTQVASHAQKYFLRRSNLN---RRRRRSSLFDIT---TDTVSAIQVEE 563
>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(44%)
Length = 1500
Score = 87.0 bits (214), Expect = 3e-18
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 12/127 (9%)
Frame = +2
Query: 68 NSNDNSVETLNSNENNLIQAESVPEESHAP------------RKGHWTEDEHKLFLKGLK 115
++N+N+ NSN ++I A+ ++ AP R WTE+EHKLFL GL+
Sbjct: 245 DANNNN----NSNNKDVIAADYASADNAAPPSSGKQRDRERKRGVPWTEEEHKLFLVGLQ 412
Query: 116 KHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQNVKDIEKKEKKRKSIHDTTLNKNDTL 175
K GKG W+ IS+ +V T+TPTQ+ASHAQKYF+ ++ + + ++R S+ D T DT+
Sbjct: 413 KVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLN---RRRRRSSLFDIT---TDTV 574
Query: 176 VTVAVEQ 182
+ VE+
Sbjct: 575 SAIQVEE 595
>TC15728 similar to AAS09986 (AAS09986) MYB transcription factor, partial
(34%)
Length = 1207
Score = 85.9 bits (211), Expect = 7e-18
Identities = 43/96 (44%), Positives = 62/96 (63%)
Frame = +1
Query: 102 WTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQNVKDIEKKEKKR 161
WTE+EHKLFL GL K GKG W+ IS+ FV T+TPTQ+ASHAQKYF+ ++ + ++R
Sbjct: 463 WTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRH---NHNRRRRR 633
Query: 162 KSIHDTTLNKNDTLVTVAVEQRDEIPSVELQSVIPP 197
S+ D T + T+ E++D+ Q ++PP
Sbjct: 634 SSLFDITTDTVMESSTIMEEEQDQ------QEMVPP 723
>TC12162 similar to AAS09999 (AAS09999) MYB transcription factor, partial
(56%)
Length = 751
Score = 85.1 bits (209), Expect = 1e-17
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +1
Query: 91 PEESHAPRKGHWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQ 149
P E + WTE+EH+LFL GLKK+GKG W++IS+ FV T+TPTQ+ASHAQKYFI Q
Sbjct: 547 PSEQERKKGVPWTEEEHRLFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQ 723
>TC9473 similar to AAS09986 (AAS09986) MYB transcription factor, partial
(50%)
Length = 887
Score = 83.2 bits (204), Expect = 5e-17
Identities = 59/180 (32%), Positives = 93/180 (50%), Gaps = 7/180 (3%)
Frame = +3
Query: 60 SGHAVAILNSNDNSVETLN--SNENNLIQAESVPEESHAPRKGH----WTEDEHKLFLKG 113
SG + N+ D+ ET + + + + VP S + R+ WTE+EH++FL G
Sbjct: 336 SGPLLGGSNNPDSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGTPWTEEEHRMFLLG 515
Query: 114 LKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQ-NVKDIEKKEKKRKSIHDTTLNKN 172
L+K GKG W+ I++ +V+++TPTQ+ASHAQKYFI Q NV + K+R S+ D
Sbjct: 516 LQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNV----SRRKRRSSLFD------ 665
Query: 173 DTLVTVAVEQRDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPISSTIPSVQQQNEL 232
+ + + P VE + Q QT+T+ N +P+ PI S+ N +
Sbjct: 666 -----IVADDASDTPMVEQDFLSANQ--LQTETEGN--NPLPAPPPIDEECESMDSTNSI 818
>TC14128 similar to AAS09980 (AAS09980) MYB transcription factor, partial
(36%)
Length = 423
Score = 75.1 bits (183), Expect = 1e-14
Identities = 33/48 (68%), Positives = 40/48 (82%)
Frame = +1
Query: 102 WTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQ 149
WTE+EHKLFL GL+K GKG W+ ISK FV T+T TQ+ASHAQKYF+ +
Sbjct: 265 WTEEEHKLFLLGLQKVGKGDWRGISKNFVKTRTSTQVASHAQKYFLRR 408
>TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription factor,
partial (32%)
Length = 664
Score = 45.4 bits (106), Expect = 1e-05
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +3
Query: 102 WTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFI----HQNVKDIEKK 157
WTE EH FL+ L+ + WK I + F+ +KT QI SHAQKYF+ + + +
Sbjct: 249 WTEQEHDKFLEALQLFDRD-WKKI-EAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPP 422
Query: 158 EKKRKSIH 165
KRK+ H
Sbjct: 423 RPKRKAAH 446
>TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(21%)
Length = 556
Score = 41.6 bits (96), Expect = 2e-04
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +2
Query: 102 WTEDEHKLFLKGLKKHGKGCWKDI 125
WTE+EHKLFL GL+K GKG W+ I
Sbjct: 485 WTEEEHKLFLVGLQKVGKGDWRGI 556
>AV413379
Length = 416
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Frame = +3
Query: 81 ENNLIQAESVP--EESHAPRKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
E LI P E++H KG WT++E + ++ HG+GCW+ + K
Sbjct: 84 EEKLINMGRSPCCEKAHT-NKGAWTKEEDDRLIAYIRAHGEGCWRSLPK 227
>AV408163
Length = 425
Score = 36.2 bits (82), Expect = 0.007
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 92 EESHAPRKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
E++H KG WT++E + ++ HG+GCW+ + K
Sbjct: 98 EKAHI-NKGAWTKEEDDRLISYIRAHGEGCWRSLPK 202
>TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%)
Length = 442
Score = 35.0 bits (79), Expect = 0.015
Identities = 14/19 (73%), Positives = 17/19 (88%)
Frame = +2
Query: 102 WTEDEHKLFLKGLKKHGKG 120
WTE+EH+LFL GL+K GKG
Sbjct: 383 WTEEEHRLFLIGLQKLGKG 439
>TC20215 similar to AAS10104 (AAS10104) MYB transcription factor, partial
(35%)
Length = 464
Score = 34.7 bits (78), Expect = 0.019
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = +2
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
++G W+E+E K+ +K++G+G WK + K
Sbjct: 65 KRGRWSEEEDKILTDFIKQNGEGSWKSLPK 154
>TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%)
Length = 532
Score = 34.3 bits (77), Expect = 0.025
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 2/43 (4%)
Frame = +3
Query: 94 SHAP--RKGHWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKT 134
SH P RKG WT +E + + + HG+G W ++K + +T
Sbjct: 90 SHDPEVRKGPWTIEEDLILINYIANHGEGVWNTLAKSAGLKRT 218
>AV417320
Length = 369
Score = 33.9 bits (76), Expect = 0.033
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
+KG WT +E ++ + ++KHG G W+ + K
Sbjct: 114 KKGPWTSEEDQILISYIQKHGHGNWRALPK 203
>TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete
Length = 1281
Score = 33.1 bits (74), Expect = 0.057
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
+KG WT +E + ++ ++KHG G W+ + K
Sbjct: 103 KKGPWTPEEDQKLVEHIQKHGHGSWRALPK 192
>NP675423 transcription factor MYB101 [Lotus japonicus]
Length = 1047
Score = 32.7 bits (73), Expect = 0.074
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISK 127
+KG WT +E + + ++KHG G W+ + K
Sbjct: 37 KKGPWTPEEDAILVDYIQKHGHGSWRALPK 126
>NP675421 transcription factor MYB103 [Lotus japonicus]
Length = 924
Score = 32.7 bits (73), Expect = 0.074
Identities = 10/26 (38%), Positives = 19/26 (72%)
Frame = +1
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWK 123
+KG W+++E K+ + ++KHG G W+
Sbjct: 37 KKGPWSQEEDKVLVDYIQKHGHGSWR 114
>TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, partial
(30%)
Length = 1353
Score = 32.0 bits (71), Expect = 0.13
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = +1
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISKE 128
+K WT +E +G++K+G G WK+I K+
Sbjct: 109 QKQKWTAEEEDALHRGVQKYGAGKWKNILKD 201
>CB828977
Length = 528
Score = 32.0 bits (71), Expect = 0.13
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = +1
Query: 98 RKGHWTEDEHKLFLKGLKKHGKGCWKDISKE 128
+K WT +E +G++K+G G WK+I K+
Sbjct: 61 QKQKWTAEEEDALHRGVQKYGAGKWKNILKD 153
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.126 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,348,892
Number of Sequences: 28460
Number of extensions: 52403
Number of successful extensions: 283
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of query: 289
length of database: 4,897,600
effective HSP length: 89
effective length of query: 200
effective length of database: 2,364,660
effective search space: 472932000
effective search space used: 472932000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC130803.10