BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130802.4 + phase: 0
(634 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 195 6e-72
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 250 6e-67
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 214 3e-56
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 179 9e-46
AU089263 162 2e-40
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 129 1e-30
AU089161 73 2e-27
TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , pa... 116 1e-26
AI967495 112 1e-25
TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like... 112 2e-25
AV765593 107 6e-24
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 99 2e-21
BF177669 96 1e-20
AV426815 94 9e-20
BP033848 93 1e-19
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 93 1e-19
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 91 7e-19
BP050971 89 2e-18
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 88 5e-18
AU088824 73 1e-13
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 195 bits (495), Expect(2) = 6e-72
Identities = 94/186 (50%), Positives = 129/186 (68%)
Frame = +2
Query: 332 DGSGDFKTISEALAAIPQTYKGRYVVYVKEGVYDETVTVTKKMVNLTMYGDGGLKSIITG 391
DGSG++ T+ EA+ A P R+V+YVK+GVY+E + KK N+ M GDG ++I+G
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVISG 208
Query: 392 NKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAGAIKEQAVAARVQADCSIFVNCNFEG 451
N++F DG TF++A+F V G GF+ R + F+NTAG K QAVA R +D ++F C+ G
Sbjct: 209 NRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSITG 388
Query: 452 YQDTLYAQTHRQFYRDCVISGTIDFIFGHASAVFQNCQLVLRKPLDNQKNIITANGRIDS 511
YQD+LY T RQFY++C I+GT+DFIFG A+AVFQNC + RK L +QKN ITA GR D
Sbjct: 389 YQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKDP 568
Query: 512 KSNTAF 517
++ F
Sbjct: 569 GQSSGF 586
Score = 93.6 bits (231), Expect(2) = 6e-72
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = +3
Query: 520 QKCVIKGEDDL-PS--TTKNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFALKTL 576
Q C I + +L PS + + Y+GRPWKEYSRT+ M+S + ++ +GWL W F TL
Sbjct: 594 QYCNITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTL 770
Query: 577 YYGEYDNVGAGAKTDARVKWIGRKDIKRGEALTYTVEPFLDGS-WINGTGVPAHLGL 632
+YGEY N GAGA RVKW G + EA +TV F++G+ W+ TGV GL
Sbjct: 771 FYGEYLNYGAGAGVGNRVKWGGYHVLNDSEAGKFTVNQFIEGNLWLPSTGVAYTGGL 941
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 250 bits (638), Expect = 6e-67
Identities = 133/256 (51%), Positives = 159/256 (61%), Gaps = 10/256 (3%)
Frame = +2
Query: 386 KSIITGNKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAGAIKEQAVAARVQADCSIFV 445
K+IITG KNF DGV+T QTA+F GF+ + + F NTAG QAVA R Q D S FV
Sbjct: 11 KTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFV 190
Query: 446 NCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGHASAVFQNCQLVLRKPLDNQKNIITA 505
C+ GYQDTLY QT+RQFYR+CVISGTIDFIFG + + Q+ +V+RKP DNQ N +TA
Sbjct: 191 GCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTA 370
Query: 506 NGRIDSKSNTAFVLQKCVIKGEDDL---PSTTKNYIGRPWKEYSRTIIMESDIPALIQPE 562
+G T V+Q C I E L K+Y+GRPWKEYSRT++MES + I PE
Sbjct: 371 DGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPE 550
Query: 563 GWLPWEGDFALKTLYYGEYDNVGAGAKTDARVKWIG-RKDIKRGEALTYTVEPFLDG--- 618
GW PW G FAL TLYY E+ N G GA T R+KW G R I R EA +T FL
Sbjct: 551 GWFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAGPR 730
Query: 619 ---SWINGTGVPAHLG 631
WI VP +LG
Sbjct: 731 SGLDWIKALHVPHYLG 778
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 214 bits (546), Expect = 3e-56
Identities = 107/218 (49%), Positives = 144/218 (65%), Gaps = 6/218 (2%)
Frame = +1
Query: 332 DGSGDFKTISEALAAIPQTYK---GRYVVYVKEGVYDETVTVTKKMVNLTMYGDGGLKSI 388
+G+ ++ +I +A+AA P K G +++YV+EG Y+E V V K+ N+ + GDG K+I
Sbjct: 172 NGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTI 351
Query: 389 ITGNKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAGAIKEQAVAARVQADCSIFVNCN 448
ITGN + +DG TF +++F V G+ F D+ FRNTAG K QAVA R AD S F C+
Sbjct: 352 ITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNNADLSTFYRCS 531
Query: 449 FEGYQDTLYAQTHRQFYRDCVISGTIDFIFGHASAVFQNCQLVLRKPLDNQKNIITANGR 508
FEGYQDTLY + RQFYR+C I GT+DFIFG+A+ VFQNC + RKPL QKN +TA GR
Sbjct: 532 FEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPFQKNAVTAQGR 711
Query: 509 IDSKSNTAFVLQKCVIKGEDDLP---STTKNYIGRPWK 543
D NT +Q C I DL ++T +Y+GRPW+
Sbjct: 712 TDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWE 825
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 179 bits (455), Expect = 9e-46
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 3/201 (1%)
Frame = +3
Query: 429 KEQAVAARVQADCSIFVNCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGHASAVFQNC 488
K QAVA R +D S+F C+F+G+QDTLYA ++RQFYR+C I+GTIDFIFG+A+++FQNC
Sbjct: 6 KHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNC 185
Query: 489 QLVLRKPLDNQKNIITANGRIDSKSNTAFVLQKCVIKGEDDLPSTTKNYIGRPWKEYSRT 548
+++ R+P+ NQ ITA G+ D NT V+QK I + T Y+GRPWK++S T
Sbjct: 186 KIMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPLES-TYTAPTYLGRPWKDFSTT 362
Query: 549 IIMESDIPALIQPEGWLPWEGDF-ALKTLYYGEYDNVGAGAKTDARVKWIGRKDIKRGEA 607
+IM+S+I + ++P GW+ W + T++Y E+ N G G+ RVKW G K +
Sbjct: 363 LIMQSEIGSFLKPVGWVSWVANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTLTADD 542
Query: 608 L-TYTVEPFLDG-SWINGTGV 626
L +T+ F+ G W+ T V
Sbjct: 543 LGKFTLASFIQGPEWLPDTAV 605
>AU089263
Length = 494
Score = 162 bits (410), Expect = 2e-40
Identities = 75/162 (46%), Positives = 112/162 (68%)
Frame = +3
Query: 69 PERVDKYSRLVTMLCSHSEYKEKCVTTLKEALKKDPKLKEPKGLLMVFMLVAKNEINNAF 128
PE V ++V ++CS++ YK+KC L +A+K DPKL PK LL ++ A+ E+N AF
Sbjct: 6 PEHVQHSEKMVKLVCSNASYKDKCEGPLNKAVKDDPKLSNPKDLLKTYVKYAEEEVNKAF 185
Query: 129 NKTANLKFASKEEKGAYEDCKQLFEDAKEEMGFSITEVGQLDISKLASKEAELNNWLSAV 188
NKT + KF S+ KGA+EDCKQL DAK+++ SI+ +G++++SKL+S+ +LN+WL AV
Sbjct: 186 NKTNSFKFESEXXKGAFEDCKQLIRDAKDDLSTSIS*LGKIELSKLSSRSPDLNSWLXAV 365
Query: 189 ISYQDTCSDGFPEGELKKKMEMIFAESRQLLSNSLAVVSQVS 230
IS+ TC GFP G+L + +F + + + NSLA+VS VS
Sbjct: 366 ISFHQTCVXGFPXGKLNNDIXXLFHGTNEFIINSLAIVSXVS 491
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 129 bits (324), Expect = 1e-30
Identities = 98/345 (28%), Positives = 156/345 (44%), Gaps = 8/345 (2%)
Frame = +3
Query: 83 CSHSEYKEKCVTTLKEALK------KDPKLKEPKGLLMVFMLVAKNEINNAFNKTANLK- 135
C H+ C+ + E + KDPKL +L+ M + + I A KT +K
Sbjct: 243 CEHALDASSCLAHVSEVSQSPISATKDPKLN----ILISLMTKSTSHIQEAMVKTKAIKN 410
Query: 136 -FASKEEKGAYEDCKQLFEDAKEEMGFSITEVGQLDISKLASKEAELNNWLSAVISYQDT 194
+ E+ A DC+QL + + + + S+ + + + + + WLS V++ T
Sbjct: 411 RINNPREEAALSDCEQLMDLSIDRVWDSVMALTKDN----TDSHQDAHAWLSGVLTNHAT 578
Query: 195 CSDGFPEGELKKKMEMIFAESRQLLSNSLAVVSQVSQIVNAFQGGLSGFKLPWGKSDAHA 254
C DG EG + ME AE L+S S ++ + ++
Sbjct: 579 CLDGL-EGPSRALME---AEIEDLISRSKTSLALLVSVL--------------------- 683
Query: 255 PAPDADTDAVADDDEDLADAPDGAPDADQPIFEAPIGAPGAAPIGAPRVDAPPSWAAPAV 314
AP + + D+ D D P D+ + E+ +G A
Sbjct: 684 -APKGGNEQIIDEPLD-GDFPSWVTRKDRRLLESSVGDVNA------------------- 800
Query: 315 DLPGSTEKPTPNVTVAKDGSGDFKTISEALAAIPQTYKGRYVVYVKEGVYDETVTVTKKM 374
NV VAKDGSG FKT++EA+A+ P + K RYV+YVK+G Y E + + KK
Sbjct: 801 -----------NVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKENIEIGKKK 947
Query: 375 VNLTMYGDGGLKSIITGNKNFVDGVRTFQTASFVVLGDGFVGRDM 419
N+ + GDG +IITGN N +DG TF++A+ +GDGF+ +D+
Sbjct: 948 TNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDI 1082
>AU089161
Length = 400
Score = 72.8 bits (177), Expect(2) = 2e-27
Identities = 36/72 (50%), Positives = 48/72 (66%)
Frame = +1
Query: 367 TVTVTKKMVNLTMYGDGGLKSIITGNKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAG 426
T +T+K + G G K++ITGNKNFVDG +T ++A+F + F+ + MGF NTAG
Sbjct: 43 TFRLTRKNLIF*CTGXGPKKTVITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAG 222
Query: 427 AIKEQAVAARVQ 438
A K QAVA RVQ
Sbjct: 223 ASKHQAVALRVQ 258
Score = 67.0 bits (162), Expect(2) = 2e-27
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +2
Query: 438 QADCSIFVNCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGHAS 482
+ D S F +C GYQDTLYA HRQFYR+C ISGT+DFIFG+++
Sbjct: 257 KXDRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYST 391
Score = 37.0 bits (84), Expect = 0.010
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = +3
Query: 356 VVYVKEGVYDETVTVTKKMVNLTMYG 381
V+YVK GVYDE + + KK N+ MYG
Sbjct: 9 VIYVKAGVYDEYIQIDKKKPNILMYG 86
Score = 26.9 bits (58), Expect = 10.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 462 RQFYRDCVISGTIDFIFGHASAVF-QNCQL 490
R + DC ISG D ++ HA F +NC++
Sbjct: 266 RSAFFDCAISGYQDTLYAHAHRQFYRNCEI 355
>TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , partial (11%)
Length = 300
Score = 116 bits (290), Expect = 1e-26
Identities = 63/95 (66%), Positives = 68/95 (71%), Gaps = 4/95 (4%)
Frame = +3
Query: 296 APIGAPRVDAPPSWAAPAVD----LPGSTEKPTPNVTVAKDGSGDFKTISEALAAIPQTY 351
+P + D PSW VD L + +P PNVTVAKDGSGDFKTISEAL IP TY
Sbjct: 21 SPAASLDSDGFPSWVH--VDDRRLLKAADNRPKPNVTVAKDGSGDFKTISEALNKIPATY 194
Query: 352 KGRYVVYVKEGVYDETVTVTKKMVNLTMYGDGGLK 386
KGRYVVYVKEGVYDE VTVTKKM N+TMYGDG K
Sbjct: 195 KGRYVVYVKEGVYDEQVTVTKKMQNVTMYGDGSQK 299
>AI967495
Length = 390
Score = 112 bits (281), Expect = 1e-25
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 4/118 (3%)
Frame = +1
Query: 462 RQFYRDCVISGTIDFIFGHASAVFQNCQLVLRKPLDNQKNIITANGRIDSKSNTAFVLQK 521
RQFY+ C I GT+D IFG+A+ VFQNC++ +KPLD Q N+ITA GR D NT +
Sbjct: 28 RQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGITIHN 207
Query: 522 CVIKGEDDLPSTTKNY---IGRPWKEYSRTIIMESDIPALIQPEGWLPWEG-DFALKT 575
I+ DL + +GRPW++YSR +++++ + L+ P GW W+ DFAL T
Sbjct: 208 SEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDDTDFALDT 381
>TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like protein,
partial (18%)
Length = 532
Score = 112 bits (280), Expect = 2e-25
Identities = 52/116 (44%), Positives = 71/116 (60%), Gaps = 8/116 (6%)
Frame = +3
Query: 522 CVIKGEDDL-------PSTTKNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFALK 574
C+I G +D P KNY+GRPWKEYSRT+ + S + AL+ P+GW+PW G+FALK
Sbjct: 3 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 182
Query: 575 TLYYGEYDNVGAGAKTDARVKWIGRKDIKRGEALTYTVEPFLDG-SWINGTGVPAH 629
TLYYGE++N G G+ RV W + + LTY+ E F+ G WI + + H
Sbjct: 183 TLYYGEFENSGPGSDLSLRVSWSSK--VPAEHVLTYSAENFIQGDDWIPSSQLSKH 344
>AV765593
Length = 501
Score = 107 bits (267), Expect = 6e-24
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Frame = -1
Query: 514 NTAFVLQKCVIKGEDDLPST---TKNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGD 570
+T + C I+ DDL S+ T Y+GRPWKEYSRT+ M++ + +I GW W+G+
Sbjct: 498 DTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDGE 319
Query: 571 FALKTLYYGEYDNVGAGAKTDARVKWIGRKDIKRGEALTYTVEPFLDG-SWINGTGV 626
FAL TLYY E++N G G+ T+ RV W G I +A +TV FL G W+ TGV
Sbjct: 318 FALSTLYYAEFNNSGPGSNTNGRVTWQGYHVINATDAANFTVSNFLLGDDWLPQTGV 148
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 99.0 bits (245), Expect = 2e-21
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Frame = +2
Query: 537 YIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFALKTLYYGEYDNVGAGAKTDARVKW 596
Y+GRPWKEYSRT+ M+S I +I P GW W G+FAL TL Y EY G GA T RV W
Sbjct: 29 YLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQYPGPGAGTSKRVAW 208
Query: 597 IGRKDI-KRGEALTYTVEPFLDGS-WINGTGVPAHLGL 632
G K I EA +T F+ GS W+ TG P LGL
Sbjct: 209 KGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 322
>BF177669
Length = 336
Score = 96.3 bits (238), Expect = 1e-20
Identities = 45/95 (47%), Positives = 60/95 (62%)
Frame = +3
Query: 519 LQKCVIKGEDDLPSTTKNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFALKTLYY 578
+Q C I +L S + Y+GRPWK YS T++M+S + + I P GWLPW G+ A T++Y
Sbjct: 51 IQNCSISPFGNL-SYVQTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSAPDTIFY 227
Query: 579 GEYDNVGAGAKTDARVKWIGRKDIKRGEALTYTVE 613
EY NVG GA T RVKW G K I +A +TV+
Sbjct: 228 AEYQNVGQGASTKNRVKWKGLKTITSKQASKFTVK 332
>AV426815
Length = 391
Score = 93.6 bits (231), Expect = 9e-20
Identities = 53/110 (48%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +3
Query: 307 PSW--AAPAVDLPGSTEKPTPNVTVAKDGSGDFKTISEALAAIPQTYKGRYVVYVKEGVY 364
P W AA L T K +V VA DGSG+FKT+S A+AA P+ K RYV+ +K GVY
Sbjct: 66 PEWISAADRRLLQAGTVKA--DVVVAADGSGNFKTVSAAVAAAPEKSKTRYVIKIKAGVY 239
Query: 365 DETVTVTKKMVNLTMYGDGGLKSIITGNKNFVDGVRTFQTASFVVLGDGF 414
E V V KK N+ GDG +IITG++N VDG TF +A+ V+G F
Sbjct: 240 RENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGGNF 389
>BP033848
Length = 525
Score = 93.2 bits (230), Expect = 1e-19
Identities = 70/214 (32%), Positives = 101/214 (46%), Gaps = 6/214 (2%)
Frame = +2
Query: 170 DISKLASKEAELNNWLSAVISYQDTCSDGFPEGELKKK------MEMIFAESRQLLSNSL 223
+I + + + NWLSAV+SYQ +C +GF +G+ ++ E + +L +L
Sbjct: 8 NIQAVHEQTPDFRNWLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGIAL 187
Query: 224 AVVSQVSQIVNAFQGGLSGFKLPWGKSDAHAPAPDADTDAVADDDEDLADAPDGAPDADQ 283
+VS +S+I+ F KL PA +A D E L P AD+
Sbjct: 188 DIVSDLSRILQTFD-----LKLDLN------PASRRLLEAEEVDHEGL---PSWFSGADR 325
Query: 284 PIFEAPIGAPGAAPIGAPRVDAPPSWAAPAVDLPGSTEKPTPNVTVAKDGSGDFKTISEA 343
+ G G K TPN VAKDGSG FKTI+ A
Sbjct: 326 KLL-------GKMKKGG---------------------KVTPNAVVAKDGSGKFKTIASA 421
Query: 344 LAAIPQTYKGRYVVYVKEGVYDETVTVTKKMVNL 377
+A+ P+ +KGRY++YV+ GVYDE +TV K+ VNL
Sbjct: 422 IASYPKGFKGRYIIYVRAGVYDEYITVPKQAVNL 523
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 93.2 bits (230), Expect = 1e-19
Identities = 50/97 (51%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Frame = +3
Query: 535 KNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEG---DFALKTLYYGEYDNVGAGAKTD 591
K Y+GRPWK+YSRTI+++S I + I P GW W+ DF L+TLYYGEY N GAGA T
Sbjct: 15 KTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDF-LQTLYYGEYLNSGAGAGTG 191
Query: 592 ARVKWIGRKDIK-RGEALTYTVEPFLDGS-WINGTGV 626
RV W G IK EA +TV + G+ W+ G GV
Sbjct: 192 KRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGV 302
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 90.5 bits (223), Expect = 7e-19
Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +1
Query: 543 KEYSRTIIMESDIPALIQPEGWLPWEGDFALKTLYYGEYDNVGAGAKTDARVKWIGRKDI 602
K YSRT+ ++S + LI P GWL W FAL TLYYGEY N G G+ ARVKW G + I
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNPSARVKWGGYRVI 180
Query: 603 KRG-EALTYTVEPFLDGS-WINGTGVPAHLGL 632
EA +TV F+ GS W+N TG+P + L
Sbjct: 181 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNL 276
>BP050971
Length = 477
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/98 (43%), Positives = 57/98 (57%), Gaps = 2/98 (2%)
Frame = -1
Query: 537 YIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFAL-KTLYYGEYDNVGAGAKTDARVK 595
++GRPWK +SRT+ MES + +I PEGWL WE L++GEY N G G+ RVK
Sbjct: 438 FLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETYTTYDDPLFFGEYPNKGPGSGVANRVK 259
Query: 596 WIGRKDIKRGEALTYTVEPFLDGS-WINGTGVPAHLGL 632
W G + A+ +TV PF+ G W+ GV H GL
Sbjct: 258 WRGYHVLNNSPAMDFTVNPFIKGDLWLPSPGVSYHAGL 145
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 87.8 bits (216), Expect = 5e-18
Identities = 48/100 (48%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +3
Query: 535 KNYIGRPWKEYSRTIIMESDIPALIQPEGWLPWEGDFALKTLYYGEYDNVGAGAKTDARV 594
+ Y+GRPWK YSRT+ M S I + GWL W FAL TLYYGEY N G GA RV
Sbjct: 27 ETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRV 206
Query: 595 KWIGRKDIKRG-EALTYTVEPFLDG-SWINGTGVPAHLGL 632
W G + I EA +TV F+ G +W+ TGV GL
Sbjct: 207 NWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 326
>AU088824
Length = 421
Score = 73.2 bits (178), Expect = 1e-13
Identities = 40/95 (42%), Positives = 50/95 (52%)
Frame = +1
Query: 376 NLTMYGDGGLKSIITGNKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAGAIKEQAVAA 435
N+ MYGDG K+IITG KNF DGV+T QTA+F GF+ + + F NTAG +
Sbjct: 10 NILMYGDGPTKTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPTVTKLWH* 189
Query: 436 RVQADCSIFVNCNFEGYQDTLYAQTHRQFYRDCVI 470
+ S F G L QT QFYR C +
Sbjct: 190 XTKGXQSAFRWAAHLGLPKXLLVQTTXQFYRXCFL 294
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,579,365
Number of Sequences: 28460
Number of extensions: 123083
Number of successful extensions: 767
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of query: 634
length of database: 4,897,600
effective HSP length: 96
effective length of query: 538
effective length of database: 2,165,440
effective search space: 1165006720
effective search space used: 1165006720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC130802.4