TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126784.7 - phase: 0 
         (339 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial...    31  0.34
AV421795                                                               30  0.58
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin...    29  0.99
AV414324                                                               29  0.99
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete          28  2.2
BP045724                                                               27  4.9
TC7938 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein,...    27  4.9
TC8473 similar to UP|BAD11591 (BAD11591) 27k vesicle-associated ...    27  4.9
TC8635 similar to UP|Q8VYT9 (Q8VYT9) ER1-like receptor kinase (F...    27  6.4
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG...    27  6.4
TC14261 weakly similar to UP|Q05929 (Q05929) EDGP precursor (Fra...    27  6.4
TC9358 weakly similar to GB|AAH10781.1|14789753|BC010781 RIO kin...    26  8.4
BU494440                                                               26  8.4
BP041751                                                               26  8.4
TC13216 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%)     26  8.4
TC8691 similar to UP|Q940T5 (Q940T5) AT5g59550/f2o15_210, partia...    26  8.4
TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein red...    26  8.4

>TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial (60%)
          Length = 453

 Score = 30.8 bits (68), Expect = 0.34
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 169 TSVKWA-SPVEFATGGYGFGLHWWDQRKPGGPVSQFKGNWDKNLNSGIVHSIDIHPSRKH 227
           T V+++ S    AT  +   +  WD   PG  +  F G+      S  V S+D HP+++ 
Sbjct: 98  TDVRFSPSMPRLATSSFDKTVKVWDVDNPGYSLRTFTGH------SASVMSLDFHPNKED 259

Query: 228 TCLAAGSLGTVLAWDL 243
              +  S G +  W +
Sbjct: 260 LICSCDSDGEIRYWSI 307


>AV421795 
          Length = 267

 Score = 30.0 bits (66), Expect = 0.58
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 50  IHSFKPNPLSFEFQSSWTSPSP--ISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARL 107
           +H  +P P S+EF    T PSP  +SSI             + SS +L F F+ S    L
Sbjct: 45  LHLLQPIPSSYEFPDPATVPSP*LLSSING--------FKRANSSTTLSFNFSSSNSEPL 200

Query: 108 VSEV 111
           V+ +
Sbjct: 201 VASI 212


>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
           (At5g24020), partial (45%)
          Length = 470

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 65  SWTSPSPISSIKSSQFLQKSIIASSTSS 92
           +W SPSP S+ +SS     S  A+STSS
Sbjct: 129 TWASPSPASASRSSPSTPMSACATSTSS 212


>AV414324 
          Length = 380

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 301 DGILGVIEQGEEPIELLAEPCAINSFDI 328
           DG+ G  E G  P+EL ++PC +N+FDI
Sbjct: 288 DGLFGACENGG-PVEL-SKPCNLNAFDI 365


>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
          Length = 1064

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 24/72 (33%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
 Frame = -2

Query: 31  NRFAVLATSDFDSNLSSIEIHSFKP--NPLSFEFQSSWTSPSPISSIKSSQFLQKSIIAS 88
           N F   +++ F  + SS    SF+   + LSF   SS  S + +SS  SS     S + +
Sbjct: 679 NGFPRRSSASFTLSSSSCSSRSFRSFSSALSFFICSSSASKASVSSSSSSSSSLSSSLLT 500

Query: 89  STSSGSLHFLFA 100
           STS  S   L A
Sbjct: 499 STSESSASTLRA 464


>BP045724 
          Length = 490

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2

Query: 88  SSTSSGSLHFLFADSTDAR 106
           +S+SS SLHFLF D  D +
Sbjct: 326 ASSSSSSLHFLFTDEGDGK 382


>TC7938 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, complete
          Length = 1142

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 128 LMDGGVECVTVGDDGRINLVTVGDSNLNYRRLFDSGGLVSYTSVK 172
           L+DG V        G +++V++  +N N+R L+D+ G     SV+
Sbjct: 260 LVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVR 394


>TC8473 similar to UP|BAD11591 (BAD11591) 27k vesicle-associated membrane
           protein-associated protein-like, partial (81%)
          Length = 1232

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 62  FQSSWTSPSPI--SSIKSSQFLQKSIIASSTSSGSLHF 97
           F SS TSPSPI      S+ FL+ S  AS+++S    F
Sbjct: 890 FHSSMTSPSPIILGPASSAGFLRASRAASASASCRFSF 777


>TC8635 similar to UP|Q8VYT9 (Q8VYT9) ER1-like receptor kinase (Fragment),
           partial (87%)
          Length = 752

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 298 CSEDGILGVIEQGEEPIELLAEPCAI 323
           C    +L + EQ E+P  LL +PC +
Sbjct: 277 CQLADVLRIREQAEKPFSLLPDPCML 200


>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
           {Arabidopsis thaliana;} , partial (24%)
          Length = 1048

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 14/66 (21%), Positives = 25/66 (37%)
 Frame = +3

Query: 178 EFATGGYGFGLHWWDQRKPGGPVSQFKGNWDKNLNSGIVHSIDIHPSRKHTCLAAGSLGT 237
           + AT      +  WD   P   V ++ G+      S  + S+D HP +        S   
Sbjct: 162 QLATASIDKSVRLWDAANPTYCVQEYNGH------SSAIMSLDFHPKKTDIFCFCDSANE 323

Query: 238 VLAWDL 243
           +  W++
Sbjct: 324 IRYWNI 341


>TC14261 weakly similar to UP|Q05929 (Q05929) EDGP precursor (Fragment),
           partial (84%)
          Length = 1604

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 190 WWDQRKPGGPVSQFKG 205
           WWDQ K GGP+   +G
Sbjct: 894 WWDQGKHGGPLHGSRG 941


>TC9358 weakly similar to GB|AAH10781.1|14789753|BC010781 RIO kinase 2 {Mus
           musculus;} , partial (10%)
          Length = 1117

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 25/72 (34%), Positives = 35/72 (47%), Gaps = 4/72 (5%)
 Frame = -3

Query: 24  LPVLSAFNRFAVLATSDFDSNLSSIEIHSFKPN----PLSFEFQSSWTSPSPISSIKSSQ 79
           +P+LS  +     + SD     SS+ I SF+ +    P   EF+S    PS    I S+ 
Sbjct: 632 IPLLSCSS-----SCSDKYEKSSSLMIASFRSSTESTPSLSEFESLSGVPSMNL*ISSAS 468

Query: 80  FLQKSIIASSTS 91
           FL K + ASS S
Sbjct: 467 FLVKPLAASSLS 432


>BU494440 
          Length = 508

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 39  SDFDS---NLSSIEIHSFKPNPLSFEFQSSWTSPSPISSIKSS 78
           SDF S   N S+  + S +P P    F  + +SPSP SS+ +S
Sbjct: 249 SDFASTCFNTSNRRLSSKQPRPGP*IFPQTSSSPSPSSSVSAS 121


>BP041751 
          Length = 471

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +3

Query: 41 FDSNLSSIEIHSFKPNPLSFEFQSSWTSPSPI 72
          +  +L+S++I S KP PLSF    S  + S I
Sbjct: 60 YPHSLTSLKIKSPKPKPLSFSLMESSIAASRI 155


>TC13216 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%)
          Length = 450

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 128 LMDGGVECVTVGDDGRINLVTVGDSNLNYRRLFDSGGLVSYTSVK 172
           L+DG V        G +++V++  +N N+R L+D+ G     SV+
Sbjct: 256 LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVR 390


>TC8691 similar to UP|Q940T5 (Q940T5) AT5g59550/f2o15_210, partial (16%)
          Length = 942

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 147 VTVGDSNLNYRRLFDSGGLVSYTSVKWASP 176
           +TVG++ L  R  F    +  YTS KW SP
Sbjct: 270 LTVGETLLGARFEFTPPSISVYTSGKWLSP 181


>TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein reductase ,
           partial (12%)
          Length = 459

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 55  PNPLSFEFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGS 94
           P P S    SSW+SP P  S         S  ASS SSG+
Sbjct: 174 PAPSSSRMSSSWSSPPPSPS---------SSAASSFSSGA 266


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,268,732
Number of Sequences: 28460
Number of extensions: 88796
Number of successful extensions: 571
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of query: 339
length of database: 4,897,600
effective HSP length: 91
effective length of query: 248
effective length of database: 2,307,740
effective search space: 572319520
effective search space used: 572319520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)