TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123572.11 + phase: 0 
         (475 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11130 weakly similar to UP|Q9LU81 (Q9LU81) Genomic DNA, chromo...   268  1e-72
AV412664                                                              150  3e-37
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13...    35  0.035
TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-bindi...    32  0.23
AV414063                                                               30  0.66
TC9512 weakly similar to UP|Q9MAB9 (Q9MAB9) T4P13.27 protein, pa...    27  5.6
AI967586                                                               27  7.3
BP069261                                                               27  7.3
TC12318                                                                27  9.5
BP038336                                                               27  9.5

>TC11130 weakly similar to UP|Q9LU81 (Q9LU81) Genomic DNA, chromosome 3, P1
           clone: MPE11, partial (44%)
          Length = 590

 Score =  268 bits (685), Expect = 1e-72
 Identities = 130/159 (81%), Positives = 141/159 (87%)
 Frame = +2

Query: 317 RQSFMGFADSCLAGESVHFFDEVHELSKISEHDCVRRIYMARHIIEKYMVAGAAMEINIS 376
           RQSFM FADSCLAGESV FFDEVHELSKI E DCVRRIYMARHIIEKY+V GA ME+NIS
Sbjct: 2   RQSFMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNIS 181

Query: 377 HRSKQEILSTSDLARADLFHNALNEIVHLMKTNLAKDYWSSMFFLKFQEECDMRCNGYEL 436
           HRS+QEI+STS+LAR DLF NALNEI+ LMKTNL  DYWSSMFFLKFQEE +MR N YEL
Sbjct: 182 HRSRQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFFLKFQEESNMRLNDYEL 361

Query: 437 EQMTGWNYSPRLSSVHGTDDPFHHDHLLKNSECGNDTDS 475
           EQMT  N+SPRLSSVHG+DDPFH +HLLK+S CGNDTDS
Sbjct: 362 EQMTVCNFSPRLSSVHGSDDPFHQEHLLKSSGCGNDTDS 478


>AV412664 
          Length = 394

 Score =  150 bits (380), Expect = 3e-37
 Identities = 77/122 (63%), Positives = 93/122 (76%)
 Frame = +2

Query: 5   KCAVKGGCPTDYVAVTVSILSFILLLIWSIFPFIVHKVPRTKGSGFWIPVIQVVASFNLL 64
           +CAV+GGCPTDYVAV +SI+SFI+LL+W+IFPF++H VPRTKGSGFWIPVIQVVASF LL
Sbjct: 59  RCAVEGGCPTDYVAVALSIVSFIVLLLWAIFPFLIHNVPRTKGSGFWIPVIQVVASFILL 238

Query: 65  LSIMTISSNLKRAIGGSHVTCGQVSFHNHTLCLFPVWGEGPLGFGLLLSSRITQAFQLYF 124
           LS++  +S  K       ++C           ++ VWGEG LGFGLLLS RITQA QLYF
Sbjct: 239 LSLVLSNSFFKLEKRHWWLSC----------YIWAVWGEGLLGFGLLLSCRITQAAQLYF 388

Query: 125 IF 126
           IF
Sbjct: 389 IF 394


>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
           protein), partial (26%)
          Length = 744

 Score = 34.7 bits (78), Expect = 0.035
 Identities = 25/92 (27%), Positives = 44/92 (47%)
 Frame = -3

Query: 182 VATLVGVTAAVHHIEFRFDELRDLWRGILVSSVSVAVWVTAYILNEIHDNISWLQVVSRF 241
           VAT + + AA++ +     EL   WRG+ +  + +  W+            SW+ V    
Sbjct: 487 VATSINLQAAIYLVMN*TSELCK*WRGVTIRPLGILDWIQ-----------SWIIVCISH 341

Query: 242 LLLVLASILVLAFFSISSSQPLLSQISLRRRE 273
           L++ L  I+++   S+  +Q  LS+I L  RE
Sbjct: 340 LIIKLRHIMIIWVSSVLLNQ-TLSRIVLEYRE 248


>TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-binding
           protein) (Subunit III) , complete
          Length = 1267

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 106 LGFGLLLSSRITQAFQLYFIFVKRRLPLIRSFLLIPLILLPWIIGAAVIHI 156
           L   LL+   I   F L+++   R L  I+ FL +PL+LL W +G  ++ +
Sbjct: 409 LSHNLLVDYIINHFFSLFYLENTRNLS*IQ*FLPLPLLLLGWPLGLLLLDL 561


>AV414063 
          Length = 430

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 23/68 (33%), Positives = 30/68 (43%), Gaps = 8/68 (11%)
 Frame = +3

Query: 46  KGSGFWIPVIQVVAS--FNLLLSIMTISSNLKRAIGGSHV------TCGQVSFHNHTLCL 97
           K  GFW   + ++AS  F L L++    S  K + G SH+      T   VS  N   C 
Sbjct: 201 KCHGFWHNAVLIIASFLFVLYLALQAKQSFRKLSHGRSHIIISYYATLWLVSILNLAWCS 380

Query: 98  FPVWGEGP 105
           F VW   P
Sbjct: 381 FQVWECSP 404


>TC9512 weakly similar to UP|Q9MAB9 (Q9MAB9) T4P13.27 protein, partial
           (26%)
          Length = 666

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -2

Query: 2   ANFKCAVKGGCPTDYVAVTVSILSF-------ILLLIWSIFPFIVHKVPRT 45
           A F  +V GGC T  + VTVS  S         +LL+  IFP +++ +  T
Sbjct: 176 AFFSFSVVGGCTTTCIVVTVSGASHNGLWHSPTVLLLSKIFPALINFISFT 24


>AI967586 
          Length = 405

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -2

Query: 54  VIQVVASF-----NLLLSIMTISSNLKRAIGGSHVTCGQV 88
           +I++V SF     +L L I+   S    AIGG+ V CGQ+
Sbjct: 395 IIEIVGSFMMHVGSLQLRILQCPSIPIHAIGGN*VVCGQI 276


>BP069261 
          Length = 384

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 24/97 (24%), Positives = 38/97 (38%)
 Frame = -3

Query: 314 KKFRQSFMGFADSCLAGESVHFFDEVHELSKISEHDCVRRIYMARHIIEKYMVAGAAMEI 373
           KK    F   A S     S  FF    ++S++S H    R+ +  H +E      A    
Sbjct: 373 KKSNSQFSMLASSLHFPCSQPFFPLFPKVSRLSYHFRCHRLRLVFHCVEPQNALSAHPFT 194

Query: 374 NISHRSKQEILSTSDLARADLFHNALNEIVHLMKTNL 410
            I+H  +    +   L+  DLF     EI++  K  +
Sbjct: 193 PITHEKR*S*SAYCSLSFVDLFE*NRIEIIYY*KVEI 83


>TC12318 
          Length = 576

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 126 FVKRRLPL-IRSFLLIPLILLPWIIGAAVIHIKKPLSNRCHMSVQWTIPV 174
           F +R++ L +RSFLL+ + +LP I   A       + N  H ++  TI +
Sbjct: 66  FKERKMALFVRSFLLLCMFMLPSICNGAFHKTHVKVINSLHGNLDLTIHI 215


>BP038336 
          Length = 335

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  ILSFILLLIWSIFPFIVHKVPRTKG 47
           I++FILLLIW  F +    +P T G
Sbjct: 212 IVNFILLLIWLGFKYFCDVLPWTNG 286


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,183,434
Number of Sequences: 28460
Number of extensions: 165075
Number of successful extensions: 1113
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of query: 475
length of database: 4,897,600
effective HSP length: 94
effective length of query: 381
effective length of database: 2,222,360
effective search space: 846719160
effective search space used: 846719160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)