TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122161.8 - phase: 0 /pseudo
         (473 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9692 similar to UP|LE14_SOYBN (P46519) Desiccation protectant ...    30  1.1
AV773788                                                               27  5.5
TC18024 weakly similar to PIR|F86410|F86410 protein F3M18.12 [im...    27  7.2
TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)     27  7.2

>TC9692 similar to UP|LE14_SOYBN (P46519) Desiccation protectant protein
           Lea14 homolog, complete
          Length = 686

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 18/36 (49%)
 Frame = +1

Query: 343 GEASVSHLPRFASFEMHKIHFCDLGFRLGAGYLYCH 378
           GE S  H+      E  K H+C LG RL  GY  CH
Sbjct: 301 GEGSSQHIA-----EHSKGHWC*LGHRLSFGYWSCH 393


>AV773788 
          Length = 496

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 320 EEAQKKWEYIINGELQQKQKAIVGEASVSHLPRFASFEMHKIHFCDLGF 368
           E+ +KK EYI+    Q  Q A+        LPRF  F  H    C +GF
Sbjct: 154 EDQEKKKEYILYLRGQPAQTAV-------SLPRFLFFFWHPN*ICVIGF 29


>TC18024 weakly similar to PIR|F86410|F86410 protein F3M18.12 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (4%)
          Length = 485

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  IPRGGPIYVSNMSGPIVRVPLFQDSILTQLHSL 51
           +  GG  + ++ + P+ R PL +DS+   LHSL
Sbjct: 97  LAEGGWNFRTSTTSPLSRAPLPRDSVAVLLHSL 195


>TC9468 similar to UP|Q9FMN3 (Q9FMN3) Emb|CAB53482.1, partial (72%)
          Length = 1317

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 3/34 (8%)
 Frame = +2

Query: 256 FRSCSLCRDFP*FS---KRCQAIQCQKKGQHDPS 286
           FR+C  CR++       K  Q  +C   GQ DPS
Sbjct: 644 FRNCDCCREYEGVLST*KESQVGECGSDGQQDPS 745


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.146    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,631,264
Number of Sequences: 28460
Number of extensions: 128597
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of query: 473
length of database: 4,897,600
effective HSP length: 94
effective length of query: 379
effective length of database: 2,222,360
effective search space: 842274440
effective search space used: 842274440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.6 bits)