BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119419.1 + phase: 0 /partial
(107 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19371 UP|AAS47510 (AAS47510) Ribosomal protein S13, partial (69%) 180 3e-47
TC12930 homologue to UP|Q84L58 (Q84L58) 1-aminocyclopropane-1-ca... 25 2.0
TC19279 similar to PIR|A46259|A46259 recombination protein recA ... 25 2.6
BP043775 24 3.4
AV772792 24 3.4
BP080584 24 3.4
TC9619 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase (... 24 3.4
TC20223 similar to UP|Q8RY64 (Q8RY64) AT4g37080/C7A10_280, parti... 24 4.4
TC9292 homologue to UP|AAR07600 (AAR07600) Fiber dTDP-glucose 4-... 24 4.4
TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing p... 23 5.8
NP459578 ribosomal protein S15 [Lotus japonicus] 23 5.8
TC9313 homologue to UP|O82529 (O82529) Ribosomal protein L27a, p... 23 7.5
BP055029 23 9.8
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot... 23 9.8
AV768823 23 9.8
TC15695 similar to UP|Q93WX6 (Q93WX6) NIFS-like protein CpNifsp ... 23 9.8
BP058247 23 9.8
BP041242 23 9.8
TC9586 similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partia... 23 9.8
TC8549 weakly similar to UP|Q8LEH3 (Q8LEH3) Cinnamoyl-CoA reduct... 23 9.8
>TC19371 UP|AAS47510 (AAS47510) Ribosomal protein S13, partial (69%)
Length = 550
Score = 180 bits (457), Expect = 3e-47
Identities = 89/92 (96%), Positives = 92/92 (99%)
Frame = +3
Query: 16 SQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 75
SQIGVILRDSHGIAQV++VTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK
Sbjct: 3 SQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 182
Query: 76 DKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
DKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 183 DKDSKFRLILVESRIHRLARYYKKTKKLPPVW 278
>TC12930 homologue to UP|Q84L58 (Q84L58) 1-aminocyclopropane-1-carboxylic
acid oxidase, partial (36%)
Length = 422
Score = 25.0 bits (53), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 52 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVE 87
IPE+L +KK S LER K+SK +L E
Sbjct: 202 IPEELLERVKKVCSEFYKLEREENFKNSKTVKLLNE 309
>TC19279 similar to PIR|A46259|A46259 recombination protein recA homolog -
Arabidopsis thaliana (fragment)
{Arabidopsis thaliana;}, partial (9%)
Length = 743
Score = 24.6 bits (52), Expect = 2.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 28 IAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE 71
I + +++ + RI L+PE+ E+ + +I+ R+HL+
Sbjct: 315 IIKTTSISSCVVERIFPTRDLSPELSENNFLIIELPQMCRRHLD 184
>BP043775
Length = 483
Score = 24.3 bits (51), Expect = 3.4
Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 1/72 (1%)
Frame = -1
Query: 35 TGNKILRILKAHGLAPEIP-EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRL 93
TG++ R L H APE P L H K+ R L+ R+ S ESR+ R
Sbjct: 264 TGSR--RSLLWHSPAPETPSSSLIHRGKRVHRFRS-LKNRRRSSSSCCLRDFRESRLRRW 94
Query: 94 ARYYKKTKKLPP 105
A + K L P
Sbjct: 93 ALHRSKEFALAP 58
>AV772792
Length = 483
Score = 24.3 bits (51), Expect = 3.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 46 HGLAPEIPEDLYHLIKKAVSIRKHLERNR 74
H A + DLYHLIK I ++ NR
Sbjct: 10 HSRAFKSKNDLYHLIKSNKGIGGNVSENR 96
>BP080584
Length = 507
Score = 24.3 bits (51), Expect = 3.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 85 LVESRIHRLARYYKKTKKL 103
L E + H+LA YYK+ K++
Sbjct: 4 LQEDKCHKLALYYKQCKEI 60
>TC9619 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase (ARGDC)
(ADC) , partial (13%)
Length = 795
Score = 24.3 bits (51), Expect = 3.4
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +3
Query: 15 PSQIGVILRDS-HGIAQVKAVTGNKILRILKAHGLAPEIP-EDLYHLI 60
PS + V+ D HG A +AV G +L+A PE+ E L H +
Sbjct: 99 PSVVRVVQSDGPHGFAVTRAVAGPSCGDVLRAMQHQPELMFETLKHRV 242
>TC20223 similar to UP|Q8RY64 (Q8RY64) AT4g37080/C7A10_280, partial (20%)
Length = 546
Score = 23.9 bits (50), Expect = 4.4
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = -2
Query: 7 KFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEI 52
K K GL S G + RD+ I QVK K+ +LKA + +I
Sbjct: 425 KVIKSGLI*SY-GRLSRDTKDILQVKTRFHRKVQMLLKAQTIPGQI 291
>TC9292 homologue to UP|AAR07600 (AAR07600) Fiber dTDP-glucose
4-6-dehydratase (Fragment), partial (66%)
Length = 641
Score = 23.9 bits (50), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 37 NKILRILKAHGLAPEIPEDLYH 58
NK+ LKA +AP++P+ YH
Sbjct: 485 NKLFHTLKAKVMAPQVPQ--YH 426
>TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing peptidase ,
partial (52%)
Length = 956
Score = 23.5 bits (49), Expect = 5.8
Identities = 9/31 (29%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -1
Query: 51 EIPEDLYHLI--KKAVSIRKHLERNRKDKDS 79
+IP ++YHL+ K + +++ L R++K++ +
Sbjct: 818 QIPPEVYHLVHLKLILKLKEDLPRHQKNQQN 726
>NP459578 ribosomal protein S15 [Lotus japonicus]
Length = 273
Score = 23.5 bits (49), Expect = 5.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 56 LYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 103
+++ K + H E +RKD S+ L + + RL Y K K+
Sbjct: 76 VFNFTNKIRRLTSHFELHRKDYLSQRGLRKILGKRQRLLSYLSKKNKI 219
>TC9313 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 624
Score = 23.1 bits (48), Expect = 7.5
Identities = 13/42 (30%), Positives = 20/42 (46%)
Frame = -1
Query: 52 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRL 93
IP D L K+ + + DK +KF+ L E + H+L
Sbjct: 573 IP*DYKMLTKQNQQYLMYANNRKMDKQTKFKTKL*EQQHHQL 448
>BP055029
Length = 506
Score = 22.7 bits (47), Expect = 9.8
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 58 HLI-KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 102
H+I ++V R+H+ KDK+ F + + ++R+ + KT K
Sbjct: 221 HIIASRSVWNRRHISNGCKDKNLHF**YWMLNELYRICKCCLKTNK 358
>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
partial (46%)
Length = 1150
Score = 22.7 bits (47), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 29 AQVKAVTGNKILRILKAHGLAP 50
A V ++G +L++ HGLAP
Sbjct: 717 AAVSGLSGQALLQMTGQHGLAP 782
>AV768823
Length = 423
Score = 22.7 bits (47), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 26 HGIAQVKAVTGNKILRILKAHGLAPEIPE 54
H I + + G+ + +LK G+AP IPE
Sbjct: 225 HYIIYLSSQGGSWFVYLLKFWGIAPLIPE 311
>TC15695 similar to UP|Q93WX6 (Q93WX6) NIFS-like protein CpNifsp precursor
(At1g08490/T27G7_14) (Cysteine desulfurase) , partial
(27%)
Length = 602
Score = 22.7 bits (47), Expect = 9.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 5 ICKFAKKGLTPSQIGVILRDSHGIA 29
+C F + L P + L HG+A
Sbjct: 140 LCSFNVENLHPPDLATFLDQQHGVA 214
>BP058247
Length = 503
Score = 22.7 bits (47), Expect = 9.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 69 HLERNRKDKDS 79
H ERNRK+KDS
Sbjct: 191 HNERNRKNKDS 159
>BP041242
Length = 542
Score = 22.7 bits (47), Expect = 9.8
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = -2
Query: 49 APEIPEDLYHLIKKAVSIRKHLERNR 74
APE P DL + K + I E NR
Sbjct: 184 APEEPHDLGFVASKVIDIEDTRELNR 107
>TC9586 similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partial (52%)
Length = 738
Score = 22.7 bits (47), Expect = 9.8
Identities = 10/42 (23%), Positives = 22/42 (51%)
Frame = -1
Query: 29 AQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL 70
+ +K++ + ++ + H L E P D H+ + +S +HL
Sbjct: 534 SDIKSIRTSTEIQDVAPHPLNQEPPSDSLHVKRGTISTVQHL 409
>TC8549 weakly similar to UP|Q8LEH3 (Q8LEH3) Cinnamoyl-CoA reductase-like
protein, partial (17%)
Length = 758
Score = 22.7 bits (47), Expect = 9.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 50 PEIPEDLYHLIKKAVSIRKHLERNRKD 76
P+I YHL ++I K L +N +
Sbjct: 12 PDISHSSYHLSNHKITITKKLTQNNNN 92
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,504,382
Number of Sequences: 28460
Number of extensions: 13796
Number of successful extensions: 77
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of query: 107
length of database: 4,897,600
effective HSP length: 83
effective length of query: 24
effective length of database: 2,535,420
effective search space: 60850080
effective search space used: 60850080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC119419.1