BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149579.7 - phase: 0 /pseudo
(367 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233825 similar to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protein ... 34 0.091
TC207092 similar to UP|Q94ET8 (Q94ET8) LCI5, partial (11%) 28 0.10
TC217721 similar to GB|AAR24767.1|38604048|BT010989 At5g21280 {A... 34 0.12
BE609836 weakly similar to GP|1628463|emb| Men-4 {Silene latifol... 34 0.12
TC207093 33 0.16
AW596042 similar to GP|15795159|dbj mouse and human tumor suscep... 33 0.27
TC228908 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (21%) 31 0.77
TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {A... 31 0.77
TC219514 weakly similar to UP|P93797 (P93797) Pherophorin-S prec... 30 1.7
TC225011 similar to UP|Q09083 (Q09083) Hydroxyproline-rich glyco... 30 1.7
TC208878 similar to UP|Q39862 (Q39862) Homeobox-leucine zipper p... 30 2.2
TC213366 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protei... 30 2.2
BE822259 30 2.2
TC209684 weakly similar to UP|HSP2_HORSE (P15342) Sperm histone ... 30 2.2
TC223141 similar to UP|GTI1_SCHPO (O14367) Gluconate transport i... 29 3.8
TC216563 similar to UP|Q05929 (Q05929) EDGP precursor (Fragment)... 29 3.8
TC204074 homologue to UP|Q39835 (Q39835) Extensin, partial (26%) 29 3.8
TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial... 29 3.8
TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 28 5.0
TC207021 similar to UP|Q940Z6 (Q940Z6) At1g12810/F13K23_4, parti... 28 5.0
>TC233825 similar to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protein (WIP2
protein), partial (7%)
Length = 527
Score = 34.3 bits (77), Expect = 0.091
Identities = 19/81 (23%), Positives = 39/81 (47%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 DPNNNHFNNQNY-SNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHP 60
DP +N F+ ++ +YP +P+++P + F NQ NI N ++ +FH
Sbjct: 122 DPYSNFFSPGSFFHHYPSPNPSPHHHPYAHNFLNQNGSNI---------NNHNTFFHFHH 274
Query: 61 YYGSMMKYPSQTPPFNGSMPM 81
+ ++ +PP ++P+
Sbjct: 275 FQTTICSSSPPSPPLREALPL 337
>TC207092 similar to UP|Q94ET8 (Q94ET8) LCI5, partial (11%)
Length = 1015
Score = 27.7 bits (60), Expect(2) = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 14 SNYPFNYENPNNYPNPNQFFNQRPQNIP 41
S+ P NPN Y NPN +++ P P
Sbjct: 48 SSNPNPNPNPNPYSNPNPYYDPNPHPYP 131
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = +3
Query: 22 NPNNYPNPNQFFNQRPQNIPN 42
NPN PNPN + N P PN
Sbjct: 54 NPNPNPNPNPYSNPNPYYDPN 116
Score = 25.0 bits (53), Expect(2) = 0.10
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +1
Query: 46 PPNFNQSSSVPNFHPYYGSMMKYPSQTPPFNGSMPMENDNFHNVGATQYPEFSTQITPSG 105
PP + SSS P S TPP S E+D+ + FST +PS
Sbjct: 205 PPRSSSSSSSP---------APLSSSTPPTRRSALPESDSTASGSEPTRGPFSTSPSPSP 357
Query: 106 MAIADEV-TPEDSTPKSKRSKEPA 128
+ E +P TP S A
Sbjct: 358 LKSTIETSSPSPMTPSPSPSATAA 429
>TC217721 similar to GB|AAR24767.1|38604048|BT010989 At5g21280 {Arabidopsis
thaliana;} , partial (15%)
Length = 1636
Score = 33.9 bits (76), Expect = 0.12
Identities = 37/130 (28%), Positives = 51/130 (38%), Gaps = 2/130 (1%)
Frame = +2
Query: 17 PFNYENPNNY-PNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHPYYGSMMKYPSQTPPF 75
P ENPN PN N Q+ N + N SSS + Y + P Q P
Sbjct: 878 PLMAENPNFVLPNQTLGLNLNLQDFNNLDATLHLNNSSSSSS---YSSATSSSPPQELPS 1048
Query: 76 NGSMPMENDNFHNVGATQYPEFSTQITPS-GMAIADEVTPEDSTPKSKRSKEPAWNTQQN 134
G + + F ++ T +TQ+T A+ DE E + + E WN N
Sbjct: 1049 VGIS--QGEGFSSLVDTIESNAATQVTGGLHTAMDDEGMAEMRSLGEQYQME--WNDTMN 1216
Query: 135 LVLISAWIKY 144
LV + W KY
Sbjct: 1217 LVKSACWFKY 1246
>BE609836 weakly similar to GP|1628463|emb| Men-4 {Silene latifolia}, partial
(17%)
Length = 368
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 2 DPNNN---HFNNQNYSNYPF--NYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVP 56
+PN N H NN S PF NY + P P+ N P FPP+ + + P
Sbjct: 97 NPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSYPQNPDPSPPTAPSFPPSSSNPNLPP 276
Query: 57 NFHPYYGSMMKYPSQTPPFN 76
F+P + S Y Q P F+
Sbjct: 277 PFNPPFESNPPYQQQQPYFS 336
Score = 32.0 bits (71), Expect = 0.45
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 YSNYPFNYENPNNYPNPNQFFNQRPQNIPN--FGFPPNFNQSSSVPNFHPYYGSMMKYPS 70
Y +P + +NPN PNPN P PN + P F + + ++ P Y S + P
Sbjct: 61 YYQFP-HLQNPNPNPNPN------PDPHPNNPYASAPPFTPNYAPSDYTP-YPSYPQNPD 216
Query: 71 QTPPFNGSMPMENDN 85
+PP S P + N
Sbjct: 217 PSPPTAPSFPPSSSN 261
>TC207093
Length = 863
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/54 (29%), Positives = 26/54 (47%)
Frame = +2
Query: 9 NNQNYSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHPYY 62
+N N + P NPN YPNPN +++ P P N +P++ P++
Sbjct: 125 SNPNPNPNPNPNPNPNPYPNPNPYYDPNPHPYPQ-------NVVVLLPSYRPHF 265
Score = 26.6 bits (57), Expect(2) = 0.29
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 2 DPNNNHFNNQNYSNYPFNYENPNNY--PNPNQFFNQRPQNI 40
+PN N N N + YP NPN Y PNP+ + PQN+
Sbjct: 134 NPNPNPNPNPNPNPYP----NPNPYYDPNPHPY----PQNV 232
Score = 24.6 bits (52), Expect(2) = 0.29
Identities = 22/79 (27%), Positives = 32/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 52 SSSVPNFHPYYGSMMKYPSQ-TPPFNGSMPMENDNFHNVGATQYPEFSTQITPSGMAIAD 110
+SS P S + PS TPP + + +D+ + FST +PS + A
Sbjct: 285 ASSTPRHSSSSSSSLAPPSSSTPPTRRFVSLGSDSTASGSEPTRGPFSTSHSPSPLKFAT 464
Query: 111 EV-TPEDSTPKSKRSKEPA 128
E +P TP S A
Sbjct: 465 ETFSPFPMTPSPSPSATAA 521
>AW596042 similar to GP|15795159|dbj mouse and human tumor susceptibility
gene-like protein {Arabidopsis thaliana}, partial (19%)
Length = 431
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = +2
Query: 22 NPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSS 53
NPN PNPN N P P+ PPN+ SS
Sbjct: 236 NPNTNPNPNPNPNPNPNPTPHPHPPPNYGNSS 331
Score = 31.6 bits (70), Expect = 0.59
Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 3/60 (5%)
Frame = +2
Query: 17 PFNYENPNNYPNPNQFFNQRPQNIPNFG--FPPNFNQSSS-VPNFHPYYGSMMKYPSQTP 73
P NPN PNPN P PN+G P N + SSS P+ H + PS P
Sbjct: 239 PNTNPNPNPNPNPNPNPTPHPHPPPNYGNSSPSNVSSSSSGYPHAHAHPPPRTYPPSPYP 418
>TC228908 similar to UP|Q6ID88 (Q6ID88) At3g26510, partial (21%)
Length = 775
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/48 (31%), Positives = 26/48 (53%)
Frame = +1
Query: 13 YSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHP 60
+ N+ Y N N PNPNQ + +P+ +PN P + + +++ F P
Sbjct: 418 FQNWTLLYPNLN--PNPNQPCSDQPKPLPNLRNPLSNSSAATAAKFSP 555
>TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {Arabidopsis
thaliana;} , partial (53%)
Length = 537
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/48 (31%), Positives = 26/48 (53%)
Frame = +2
Query: 13 YSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHP 60
+ N+ Y N N PNPNQ + +P+ +PN P + + +++ F P
Sbjct: 80 FQNWTLLYPNLN--PNPNQPCSDQPKPLPNLRNPLSNSSAATAAKFSP 217
>TC219514 weakly similar to UP|P93797 (P93797) Pherophorin-S precursor,
partial (8%)
Length = 654
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +3
Query: 6 NHFNNQNYSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHPYYGSM 65
N FN S+ P + +P P+P + +RP+ P+ PPN P
Sbjct: 171 NSFNRTTTSHSPTSPPSPPPLPSPRR---RRPRPTPSPNSPPN-----------PTPPLP 308
Query: 66 MKYPSQTPPFNGSMP 80
K PS +PP S P
Sbjct: 309 TKIPSSSPPAPASAP 353
>TC225011 similar to UP|Q09083 (Q09083) Hydroxyproline-rich glycoprotein
precursor, partial (20%)
Length = 964
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 16 YPFNYENPNNYPNPNQFFNQRPQNIPNFGFPP---NFNQSSSVPNFHPYYGSMMKYPSQT 72
YP + +P+ YP+P+ + P + + PP + S P HP Y Y S
Sbjct: 323 YPHPHPHPHPYPHPHPHPHPHPPYVYHSPPPPPKKPYKYPSPPPPVHPPYIPHPVYHSPP 502
Query: 73 PP 74
PP
Sbjct: 503 PP 508
>TC208878 similar to UP|Q39862 (Q39862) Homeobox-leucine zipper protein,
partial (46%)
Length = 701
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 2 DPNNNHFNNQNYSNYPFN-YENPNNYPNPNQFFN 34
D NNN+ N+ YPF ++ P + PN FN
Sbjct: 61 DDNNNNLNHHQQQQYPFYVHKPPQSVPNQRASFN 162
>TC213366 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protein (WIP2
protein), partial (16%)
Length = 897
Score = 29.6 bits (65), Expect = 2.2
Identities = 25/90 (27%), Positives = 37/90 (40%), Gaps = 8/90 (8%)
Frame = +1
Query: 2 DPNNNHFN--------NQNYSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSS 53
DP +N F+ + +YS+ NY NNY N N+F Q Q SS
Sbjct: 34 DPQSNLFHEWFNFMLLHPHYSSSQSNYPFANNYSNNNRFGIQLQQGA----------ASS 183
Query: 54 SVPNFHPYYGSMMKYPSQTPPFNGSMPMEN 83
S +F+ P +PP ++P+ N
Sbjct: 184 SSSSFY-------AAPPSSPPLREALPLIN 252
>BE822259
Length = 583
Score = 29.6 bits (65), Expect = 2.2
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 262 IQRRKQIEEGSGSRSRKYLKRDHAG----ANQRLIDDYFANEPTYDDAMFRRRYRM--QK 315
IQR KQI+E SGS SR H G ++Q + FA PT + + RRYR+ Q+
Sbjct: 570 IQRIKQIQEASGSTSRLQKLSLHKGGRKLSHQNM*HWLFA--PT-RNLLGARRYRI*KQQ 400
Query: 316 HVFLRIVGDLS 326
HV L I D++
Sbjct: 399 HVNLLIWMDVT 367
>TC209684 weakly similar to UP|HSP2_HORSE (P15342) Sperm histone P2a
(Protamine 2a) (ST2a), partial (55%)
Length = 578
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/70 (25%), Positives = 34/70 (47%)
Frame = +3
Query: 45 FPPNFNQSSSVPNFHPYYGSMMKYPSQTPPFNGSMPMENDNFHNVGATQYPEFSTQITPS 104
+PP+ +S+ P +P S+ P+ +PP + + G++Q P S + TP+
Sbjct: 72 YPPS---ASTAPPTYPPSSSLT--PATSPPLPSAAATTPSPSSSSGSSQTPSSSNETTPA 236
Query: 105 GMAIADEVTP 114
+ A +TP
Sbjct: 237 RLNGASSITP 266
>TC223141 similar to UP|GTI1_SCHPO (O14367) Gluconate transport inducer 1,
partial (3%)
Length = 416
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/37 (43%), Positives = 20/37 (53%)
Frame = +2
Query: 3 PNNNHFNNQNYSNYPFNYENPNNYPNPNQFFNQRPQN 39
P N H N +N PF Y +PN Y P FF+ +P N
Sbjct: 41 PTNPHHNKKNK---PFLY-SPNIYI*PLSFFSHKPNN 139
>TC216563 similar to UP|Q05929 (Q05929) EDGP precursor (Fragment), partial
(29%)
Length = 1546
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/73 (27%), Positives = 33/73 (44%)
Frame = +2
Query: 59 HPYYGSMMKYPSQTPPFNGSMPMENDNFHNVGATQYPEFSTQITPSGMAIADEVTPEDST 118
H + ++ P T PFN S+P N P ST+ T + A + +P+ ++
Sbjct: 260 HATHLHLLPSPPLTVPFNASLPKPT----NPPTPFSPAPSTKSTSTNHA---KCSPKTAS 418
Query: 119 PKSKRSKEPAWNT 131
P+ KE +W T
Sbjct: 419 PEPSPPKENSWKT 457
>TC204074 homologue to UP|Q39835 (Q39835) Extensin, partial (26%)
Length = 366
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 13 YSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFP----PNFNQSSSVPNFHPYYGSMMKY 68
Y + P + P YP+P + P + +P P + S P + Y KY
Sbjct: 82 YKSPPPPPKEPYKYPSPPPPVYKYKSPPPPYKYPSPPPPPYKYPSPPPPVYKYKSPPYKY 261
Query: 69 PSQTPP 74
PS PP
Sbjct: 262 PSPPPP 279
>TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial (52%)
Length = 992
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 4/62 (6%)
Frame = +1
Query: 46 PPNFNQSSSVPNFHPYYGSMMKYPSQTP----PFNGSMPMENDNFHNVGATQYPEFSTQI 101
P N+++ P FH + G YP+ P P NGS + N N A + P Q+
Sbjct: 742 PSNYDEDGGKPKFHYHAGGTGHYPAPNPGMFSPSNGSKSVAAAN-ANANAKR-PNGQAQL 915
Query: 102 TP 103
P
Sbjct: 916 KP 921
>TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (67%)
Length = 1240
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 7/71 (9%)
Frame = +3
Query: 17 PFNYENP---NNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHP----YYGSMMKYP 69
P+ Y++P + P P ++ P P PP + +S P HP Y P
Sbjct: 717 PYYYKSPPPPSPSPPPPYYYQSPPPPSPT-PHPPYYYKSPPPPTSHPPPYHYVSPPPPSP 893
Query: 70 SQTPPFNGSMP 80
S PP++ + P
Sbjct: 894 SPPPPYHYTSP 926
>TC207021 similar to UP|Q940Z6 (Q940Z6) At1g12810/F13K23_4, partial (51%)
Length = 710
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +3
Query: 3 PNNNHFNNQNYSNYPFNYENPNNYPNPNQFFNQRPQNIPNFGFPPNFNQSSSVPNFHPYY 62
P +N + S+ P Y +P YP P + P P+ G+PP P H Y
Sbjct: 69 PMSNFQRISHESHPPPGYGSP--YPPPQPGYPSAP---PHEGYPP------PPPPPHGYG 215
Query: 63 GSMMKYPSQTPPFN 76
G P Q PP++
Sbjct: 216 GYPPPQPPQRPPYD 257
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.143 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,620,107
Number of Sequences: 63676
Number of extensions: 261942
Number of successful extensions: 2340
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of query: 367
length of database: 12,639,632
effective HSP length: 99
effective length of query: 268
effective length of database: 6,335,708
effective search space: 1697969744
effective search space used: 1697969744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 60 (27.7 bits)
Medicago: description of AC149579.7