BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148917.11 - phase: 0
(473 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 293 9e-80
TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 194 7e-50
CO985072 180 1e-45
BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidop... 167 1e-41
CA801759 similar to GP|9294272|dbj mitochondrial protein-like {A... 166 2e-41
BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {A... 149 2e-36
BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein ... 143 2e-34
TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type AT... 142 2e-34
TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like prot... 135 4e-32
TC222476 similar to UP|Q9FN75 (Q9FN75) AAA-type ATPase-like prot... 131 6e-31
TC220287 similar to UP|Q9FRW0 (Q9FRW0) Mitochondrial protein-lik... 129 2e-30
AW101753 110 1e-24
TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-li... 108 5e-24
BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {A... 107 2e-23
TC234458 weakly similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like ... 105 4e-23
BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein... 103 1e-22
TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F1... 98 9e-21
CO978630 96 5e-20
AI443254 weakly similar to GP|9759050|dbj| AAA-type ATPase-like ... 92 5e-19
TC213435 similar to UP|Q9FKM3 (Q9FKM3) Similarity to AAA-type AT... 70 2e-12
>TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(34%)
Length = 1025
Score = 293 bits (751), Expect = 9e-80
Identities = 143/250 (57%), Positives = 185/250 (73%), Gaps = 4/250 (1%)
Frame = +1
Query: 215 DLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNK 274
DL++FV+ +E+YRR GKAWKRGYLLYGPPGTGKSSLIAAMANYL +D+YDL+LT++ N
Sbjct: 1 DLERFVKRKEYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTELNANS 180
Query: 275 TLKQLILSMSNRAILVIEDIDCTINLQNREEEKEVVN--NGDNKVTLSGLLNATDGLWSC 332
L++L+++M+NR+ILV+EDIDCT+ +R E + N D +VTLSGLLN DGLWS
Sbjct: 181 ELRRLLIAMANRSILVVEDIDCTVEFHDRRAEARAASGHNNDRQVTLSGLLNFIDGLWSS 360
Query: 333 CGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELFEKI 392
CG+E IIVFTTNHK++LDPALLRPGRMD IH+SYC GF+QL NYL I EH LFEKI
Sbjct: 361 CGDERIIVFTTNHKDKLDPALLRPGRMDVHIHMSYCTPCGFRQLASNYLGIKEHSLFEKI 540
Query: 393 EVLLGEVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKMIK--EEVKNEENIQEPEPKK 450
E + + QVTPAE+ E+L K L+ LI F++ KK + E K E+ +E + +K
Sbjct: 541 EEEMQKTQVTPAEVAEQLLKSSHIETSLEQLIDFMRKKKETQKLEAKKKEQEAKEEQQRK 720
Query: 451 MIEEETKNEE 460
I++ K E+
Sbjct: 721 EIDDGGKGEK 750
>TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(26%)
Length = 808
Score = 194 bits (493), Expect = 7e-50
Identities = 101/204 (49%), Positives = 136/204 (66%), Gaps = 11/204 (5%)
Frame = +1
Query: 238 LLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCT 297
LLYGP GTGKSSLIAA+ANYL D+YDL+L+ + N L +++ + R+I+VIEDIDC
Sbjct: 1 LLYGPXGTGKSSLIAAIANYLKXDVYDLELSSMXSNSELMRVMRETTXRSIIVIEDIDCN 180
Query: 298 INLQNREEEKEVVNNGDN-----------KVTLSGLLNATDGLWSCCGEEHIIVFTTNHK 346
+ R K ++ + + TLSGLLN DGLWS GEE II+FTTNH+
Sbjct: 181 KEVHARPTTKPFSDSDSDFDRKRVKVKPYRFTLSGLLNNMDGLWSSGGEERIIIFTTNHR 360
Query: 347 ERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELFEKIEVLLGEVQVTPAEI 406
ER+DPALLRPGRMD IHLS+ F+ L NYL I +H LFE+I+ LL +++VTPA +
Sbjct: 361 ERIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLGIEDHSLFEEIDGLLEKLEVTPAVV 540
Query: 407 GEELTKDCDATECLQDLIKFLQAK 430
E+L ++ D L+ L++FL+ K
Sbjct: 541 AEQLMRNEDPEVALEGLVEFLKEK 612
>CO985072
Length = 839
Score = 180 bits (456), Expect = 1e-45
Identities = 103/226 (45%), Positives = 142/226 (62%), Gaps = 23/226 (10%)
Frame = -3
Query: 259 NYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCTINLQN-REEEKEVVNN----- 312
NYD+YDL+LT V DN L++L+++ S+++I+VIEDIDC+++L R++ KE V
Sbjct: 837 NYDVYDLELTAVKDNSDLRKLLINTSSKSIMVIEDIDCSLDLTGQRKKRKEKVEGREGKD 658
Query: 313 ----GD---------NKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRM 359
GD +KVTLSGLLN DG+WS CG E I+VFTTN E+LDPAL+R GRM
Sbjct: 657 SRKRGDEDDDDDDRGSKVTLSGLLNVIDGIWSACGGERIMVFTTNFVEKLDPALIRRGRM 478
Query: 360 DKQIHLSYCNFSGFKQLVVNYLCITEHELFEKIEVLLGEVQVTPAEIGEEL---TKDCDA 416
DK I LSYC + FK L NYL + H+LF KIE LL E ++TPA++ E L + D +
Sbjct: 477 DKHIELSYCCYEAFKVLAQNYLGLESHQLFPKIEKLLEETKMTPADVAENLMPKSLDEEV 298
Query: 417 TECLQDLIKFLQAKKMIKEEVKNEENIQEPEPKKMIEEETKN-EEN 461
CL +LI+ L+ K+ E+ K E ++ +K E + EEN
Sbjct: 297 DTCLHNLIQALERSKVDLEKKKAETERKQSNVQKTSENHGEGMEEN 160
>BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidopsis
thaliana}, partial (19%)
Length = 417
Score = 167 bits (422), Expect = 1e-41
Identities = 85/138 (61%), Positives = 103/138 (74%), Gaps = 13/138 (9%)
Frame = +2
Query: 234 KRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIED 293
KRGYLL GPPGTGKSSLIAAMANYLN+D+YDL+LTDV N L++L++ NR+ILV+ED
Sbjct: 2 KRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDVRRNTDLRKLLIGTGNRSILVVED 181
Query: 294 IDCTINLQNR----EEEKEVV---------NNGDNKVTLSGLLNATDGLWSCCGEEHIIV 340
IDC++ LQ+R + + V +N +VTLSG LN DGLWS CG+E IIV
Sbjct: 182 IDCSLTLQDRLAKPKSSQPVAITPWPFHPHDNPKPQVTLSGFLNFIDGLWSSCGDERIIV 361
Query: 341 FTTNHKERLDPALLRPGR 358
FTTNHK +LDPALLRPGR
Sbjct: 362 FTTNHKNKLDPALLRPGR 415
>CA801759 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (26%)
Length = 450
Score = 166 bits (420), Expect = 2e-41
Identities = 82/148 (55%), Positives = 110/148 (73%), Gaps = 16/148 (10%)
Frame = +3
Query: 237 YLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDC 296
YLLYGPPGTGKS++IAA+AN++NYD+YDL+LT V DN L++L++ +++I VIEDIDC
Sbjct: 3 YLLYGPPGTGKSTMIAAIANFMNYDVYDLELTAVKDNTELRKLLIETPSKSITVIEDIDC 182
Query: 297 TINL---------QNREEEK-------EVVNNGDNKVTLSGLLNATDGLWSCCGEEHIIV 340
+++L +N +EE+ E ++ +KVTLSGLLN DG+WS CG E IIV
Sbjct: 183 SLDLTGQRKKKKEENEDEEQKDPMRRNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIV 362
Query: 341 FTTNHKERLDPALLRPGRMDKQIHLSYC 368
FTTN+ E+LDPAL+R GRMDK I +SYC
Sbjct: 363 FTTNYVEKLDPALIRRGRMDKHIEMSYC 446
>BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (24%)
Length = 405
Score = 149 bits (377), Expect = 2e-36
Identities = 75/134 (55%), Positives = 98/134 (72%), Gaps = 16/134 (11%)
Frame = +2
Query: 233 WKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIE 292
WKRGYLLYGPPGTGKS++IAAMAN+L YD+YDL+LT V DN L++L++ S+++I+VIE
Sbjct: 2 WKRGYLLYGPPGTGKSTMIAAMANFLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIE 181
Query: 293 DIDCTINLQ-NREEEKEVVNNGD---------------NKVTLSGLLNATDGLWSCCGEE 336
DIDC+++L R ++KE V D ++VTLSGLLN DGLWS CG E
Sbjct: 182 DIDCSLDLTGQRRKKKEEVEEKDQRQKQQGMQEREVKSSQVTLSGLLNFIDGLWSACGGE 361
Query: 337 HIIVFTTNHKERLD 350
+IVFTTN+ E+LD
Sbjct: 362 RLIVFTTNYVEKLD 403
>BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein {Arabidopsis
thaliana}, partial (21%)
Length = 421
Score = 143 bits (360), Expect = 2e-34
Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Frame = +3
Query: 314 DNKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGF 373
D +++L GLLN DGLWS CG+E II+ TTNHKERLDPALLRPGRMD IH+SYC++ GF
Sbjct: 21 DVQLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGF 200
Query: 374 KQLVVNYLCIT-EHELFEKIEVLLGEVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKM 432
K L NYL I +H L +IE L+ ++Q+TPA++ EEL K DA L+ +K L+ KKM
Sbjct: 201 KVLASNYLDIAPDHRLVGEIEGLIEDMQITPAQVAEELMKSEDADTALEGFLKLLKRKKM 380
Query: 433 IKEEVKNE 440
+ +N+
Sbjct: 381 EGDVCEND 404
>TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type ATPase,
partial (24%)
Length = 724
Score = 142 bits (359), Expect = 2e-34
Identities = 87/197 (44%), Positives = 113/197 (57%), Gaps = 24/197 (12%)
Frame = +3
Query: 294 IDCTINLQNR--------EEEK--------EVVNNGDNKVTLSGLLNATDGLWSCCGEEH 337
IDC+++L + EEE+ E N ++KVTLSGLLN DG+WS CG E
Sbjct: 3 IDCSLDLTGQRNMRRERGEEEEPKDPSKKDEEEGNKNSKVTLSGLLNFIDGIWSACGGER 182
Query: 338 IIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELFEKIEVLLG 397
II+FTTN ++LDPAL+R GRMDK I LSYC F FK L NYL + H LF +I LL
Sbjct: 183 IIIFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFKVLAKNYLDVDSHYLFARIANLLE 362
Query: 398 EVQVTPAEIGEELTKDC---DATECLQDLIKFLQAKKMIKEEVKNEENIQEPEPK-KMIE 453
VTPA+I E L C D CL +LI+ L K + EE + E + E + K + +
Sbjct: 363 VTNVTPADIAENLMPKCLNEDVESCLLNLIQSLD--KKVAEEEEEEAGLNEEKVKGEPTQ 536
Query: 454 EETKNE----ENIKEEG 466
+E KN E++KE G
Sbjct: 537 QENKNNGHSVEDVKENG 587
>TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein, partial
(21%)
Length = 803
Score = 135 bits (340), Expect = 4e-32
Identities = 64/117 (54%), Positives = 85/117 (71%), Gaps = 1/117 (0%)
Frame = +3
Query: 324 NATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYL-C 382
N DGLWS CG+E II+FTTNHKERLDPALLRPGRMD IH+SYC++ GFK L NYL
Sbjct: 3 NFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLET 182
Query: 383 ITEHELFEKIEVLLGEVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKMIKEEVKN 439
++H LF ++E L+ ++Q+TPA++ EEL K+ D L+ +K L+ KKM + +N
Sbjct: 183 PSDHPLFGEVEGLIEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCEN 353
>TC222476 similar to UP|Q9FN75 (Q9FN75) AAA-type ATPase-like protein, partial
(18%)
Length = 480
Score = 131 bits (330), Expect = 6e-31
Identities = 61/112 (54%), Positives = 85/112 (75%)
Frame = +1
Query: 213 VNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGD 272
+ DLD+FV+ +EFY+R G+AWKRGYLLYGPPGTGKSSLIAAMANYL +D++DL+L +
Sbjct: 16 IEDLDRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELGSIVR 195
Query: 273 NKTLKQLILSMSNRAILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLN 324
+ L++L+L+ +NR+ILVIEDIDC+++L R D +V+ S L+
Sbjct: 196 DSDLRKLLLATANRSILVIEDIDCSVDLPERRHGDHGRKQADVQVSNSESLS 351
>TC220287 similar to UP|Q9FRW0 (Q9FRW0) Mitochondrial protein-like protein
(Fragment), partial (44%)
Length = 980
Score = 129 bits (325), Expect = 2e-30
Identities = 83/245 (33%), Positives = 128/245 (51%), Gaps = 17/245 (6%)
Frame = +3
Query: 15 SAMASIMLMRTITNE-----LLQFFQAGLHHLFRQSSAQFTIIIEEFQG--MARNQVFDA 67
S MA+I+ M TI L + QA L + I EF G + +++ + A
Sbjct: 234 SLMATIVFMYTIFERFFPPHLREKLQAYTQKLTNHFNPYIQISFPEFSGERLKKSEAYTA 413
Query: 68 AQAYLGTKATVSVERVKVSKSGDRKE-LSFNIDRNEEVSDVFEGISVKWKLICIEVDSSR 126
Q YL ++ +R+K D + L ++D NEE++D F GI + + + R
Sbjct: 414 IQTYLSANSSQRAKRLKAEVVNDSQTPLVLSMDDNEEITDEFHGIKLWRSANKVSNNPQR 593
Query: 127 IRSYDDDSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIHSNE--- 183
+ S+ E R Y+LTFHK+H+D + SY+ +V++ K I+ + K+++N
Sbjct: 594 YNPFSYYGSS-DEKRFYKLTFHKRHRDIVTMSYIKHVLDEGKDIEMRNRQLKLYTNNPSS 770
Query: 184 --YG----SWRHDVKFNHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGY 237
YG W H V F HP +F TLA+D + DI+ DL KF + +++Y + GKAWKRGY
Sbjct: 771 GWYGYKQSKWSHIV-FEHPATFETLAMDRRKKEDILKDLVKFKKGKDYYAKIGKAWKRGY 947
Query: 238 LLYGP 242
LLYGP
Sbjct: 948 LLYGP 962
>AW101753
Length = 341
Score = 110 bits (275), Expect = 1e-24
Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 18/112 (16%)
Frame = +2
Query: 254 MANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCTINLQNREEEKEVVNNG 313
MAN+L YD+YDL+LT V DN L+ L++ +NR+I+VIEDIDC++++ K + G
Sbjct: 2 MANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDITADRTVKVKKSQG 181
Query: 314 ------------------DNKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKE 347
+VTLSGLLN TDGLWSCCGEE I+VFTTNH++
Sbjct: 182 AKLSLRSSNKKGQTGCEESGRVTLSGLLNFTDGLWSCCGEERIVVFTTNHRD 337
>TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein,
partial (18%)
Length = 520
Score = 108 bits (270), Expect = 5e-24
Identities = 59/118 (50%), Positives = 73/118 (61%)
Frame = +1
Query: 338 IIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELFEKIEVLLG 397
IIVFTTNHK +LDPALLRPGRMD I ++YC GFK L NYL ITEH LF ++E LL
Sbjct: 4 IIVFTTNHKNKLDPALLRPGRMDVHIDMTYCTPCGFKMLAFNYLGITEHPLFVEVETLLK 183
Query: 398 EVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKMIKEEVKNEENIQEPEPKKMIEEE 455
VTPAE+GE+ K+ D L+ L++ L K E+ K I+ E + E E
Sbjct: 184 TTNVTPAEVGEQFLKNEDPEIALESLMELLIEKGRNHEKNKAALTIECFESAESFENE 357
>BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {Arabidopsis
thaliana}, partial (30%)
Length = 436
Score = 107 bits (266), Expect = 2e-23
Identities = 59/149 (39%), Positives = 90/149 (59%), Gaps = 2/149 (1%)
Frame = +1
Query: 262 IYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSG 321
+YD+DL+ + + L L+ + ++++V+ED+D + E E E VT SG
Sbjct: 1 VYDVDLSKIRGDSDLMFLLTETTAKSVIVVEDLDRFL-----EPEPETAT----AVTASG 153
Query: 322 LLNATDGLWS-CCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNY 380
+ + DG+ S CCGEE ++VFT N KE +DP LLRPGR+D IH C+FS FK L +Y
Sbjct: 154 IQSFMDGIVSACCGEERVMVFTMNSKECVDPDLLRPGRVDVHIHFPVCDFSAFKTLASSY 333
Query: 381 LCITEHELFEKIEVLLGE-VQVTPAEIGE 408
L + +H+LF ++E + ++PAEI E
Sbjct: 334 LGVRKHKLFAQVEEIFRHGATLSPAEISE 420
>TC234458 weakly similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein,
partial (19%)
Length = 450
Score = 105 bits (262), Expect = 4e-23
Identities = 57/147 (38%), Positives = 90/147 (60%), Gaps = 9/147 (6%)
Frame = +3
Query: 68 AQAYLGTKATVSVERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLICIEVDSSRI 127
A+ YLG K + + R+KVSK + ++RNE ++DVF + W L+C +V+S
Sbjct: 3 AETYLGAKISPNTRRLKVSKPETDTTFALTMERNESLTDVFRSMKFNWVLVCRQVESRGF 182
Query: 128 RSYDD-DSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKI----HSN 182
+ D +++ SE+RS ELTF+KKHKD ++ +YLPY++ AK +KQ A KI + N
Sbjct: 183 HNPRDLNATMKSEVRSLELTFNKKHKDMVLQTYLPYILNEAKSMKQATKALKIFTVDYQN 362
Query: 183 EYG----SWRHDVKFNHPMSFNTLAID 205
YG +W +K +HP +F+TLA++
Sbjct: 363 MYGNISDAW-VGMKLDHPATFDTLAME 440
>BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein-like
{Arabidopsis thaliana}, partial (15%)
Length = 416
Score = 103 bits (258), Expect = 1e-22
Identities = 46/78 (58%), Positives = 59/78 (74%)
Frame = -2
Query: 316 KVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQ 375
+VTLSGLLN TDGLWSCCGEE I+VFTTNH++ +DPAL+R GRMD + L+ C F++
Sbjct: 415 RVTLSGLLNFTDGLWSCCGEERIVVFTTNHRDSVDPALVRCGRMDVHVSLATCGAHAFRE 236
Query: 376 LVVNYLCITEHELFEKIE 393
L NYL + H LF+ +E
Sbjct: 235 LARNYLGLESHVLFQAVE 182
>TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F13A10.15
{Arabidopsis thaliana;} , partial (22%)
Length = 786
Score = 97.8 bits (242), Expect = 9e-21
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 3/119 (2%)
Frame = +2
Query: 315 NKVTLSGLLNATDGLWSCCGEEHIIVFTTNH-KERLDPALLRPGRMDKQIHLSYCNFSGF 373
N +LS +LN DG+ SCCGEE ++VFT N KE +D A+LRPGR+D IH C+FS F
Sbjct: 32 NTTSLSSVLNFMDGIVSCCGEERVMVFTMNETKEEVDQAVLRPGRIDVHIHFPLCDFSTF 211
Query: 374 KQLVVNYLCITEHELFEKI-EVLLGEVQVTPAEIGEELTKDCDA-TECLQDLIKFLQAK 430
K L +YL + EH+LF ++ EV +++PAE+GE + + ++ T L+ +I LQ +
Sbjct: 212 KILASSYLGLKEHKLFPQVEEVFQTGARLSPAELGEIMISNRNSPTRALKTVISALQVQ 388
>CO978630
Length = 660
Score = 95.5 bits (236), Expect = 5e-20
Identities = 47/95 (49%), Positives = 64/95 (66%), Gaps = 2/95 (2%)
Frame = -1
Query: 316 KVTLSGLLNATDGLW-SCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFK 374
+++ SG+LN D L SCC EE ++VFT N KE +DP LLRPGR+D IH C+FS FK
Sbjct: 657 EISASGILNFMDALLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFK 478
Query: 375 QLVVNYLCITEHELFEKI-EVLLGEVQVTPAEIGE 408
L +YL + EH+LF ++ E+ ++PAEIGE
Sbjct: 477 TLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGE 373
>AI443254 weakly similar to GP|9759050|dbj| AAA-type ATPase-like protein
{Arabidopsis thaliana}, partial (4%)
Length = 392
Score = 92.0 bits (227), Expect = 5e-19
Identities = 47/128 (36%), Positives = 79/128 (61%), Gaps = 7/128 (5%)
Frame = +2
Query: 81 ERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLICIEVDSSRIRSYDDDSSAV--S 138
ER+K+SKS K+L+ +++ E+V D F+G KW+ IC E + + + +++S S
Sbjct: 8 ERLKISKSAKEKKLTVRLEKGEKVVDCFDGACFKWRFICAESEKNNPNDHSNNNSISVRS 187
Query: 139 EIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIH----SNEYGSWRHD-VKF 193
E RS+EL+F KK+K+ ++DSYLP+++E AK++K + K+H S Y + D +
Sbjct: 188 EKRSFELSFPKKYKEMVLDSYLPFILEKAKEMKDEERVLKMHTLNTSYCYSGVKWDSINL 367
Query: 194 NHPMSFNT 201
HP +F T
Sbjct: 368 EHPSTFET 391
>TC213435 similar to UP|Q9FKM3 (Q9FKM3) Similarity to AAA-type ATPase,
partial (19%)
Length = 524
Score = 70.5 bits (171), Expect = 2e-12
Identities = 45/133 (33%), Positives = 76/133 (56%), Gaps = 15/133 (11%)
Frame = +1
Query: 350 DPALLRPGRMDKQIHLSYCNFSGFKQLVVNYL----CITEHELFEKIEVLLGEVQVTPAE 405
DPALLR GRMD I +SYC+F K L+ NYL C E + +++E ++ ++TPA+
Sbjct: 1 DPALLRSGRMDMHIFMSYCSFPALKILLKNYLGCEECELEEPILKRLEEVVDVARMTPAD 180
Query: 406 IGEELTKDCDATE-CLQDLIKFLQAKKMIKEE-----VKNEENIQEPEPKKMIE-----E 454
I E L K+ E +++L++ L+ + + E+ V N +E + K+ ++ +
Sbjct: 181 ISEVLIKNRRKIEKAVEELLETLKLRAEMNEKNGVLRVTNGVEEEEEQEKRALDSESPKQ 360
Query: 455 ETKNEENIKEEGE 467
E++ E+N KEE E
Sbjct: 361 ESEIEDNCKEEEE 399
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,611,663
Number of Sequences: 63676
Number of extensions: 212789
Number of successful extensions: 1388
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of query: 473
length of database: 12,639,632
effective HSP length: 101
effective length of query: 372
effective length of database: 6,208,356
effective search space: 2309508432
effective search space used: 2309508432
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148917.11