BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.1 + phase: 0
(131 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW185041 homologue to GP|1177607|emb| pva1 {Plasmodium vivax}, p... 44 3e-05
TC229276 weakly similar to UP|SRE2_HUMAN (Q12772) Sterol regulat... 33 0.030
TC206457 weakly similar to UP|MTD_FRAAN (Q9ZRF1) Probable mannit... 31 0.19
TC217096 homologue to UP|Q8W1S2 (Q8W1S2) ABC transporter-like pr... 30 0.33
TC209823 29 0.56
BG316255 29 0.73
TC234379 similar to UP|Q6K4B1 (Q6K4B1) Helix-loop-helix DNA-bind... 29 0.73
TC213205 28 0.95
TC213058 28 0.95
TC233876 weakly similar to UP|Q731A3 (Q731A3) Stage III sporulat... 28 1.2
TC210628 28 1.6
TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacti... 28 1.6
TC223575 27 2.1
BE020845 27 2.1
TC207991 similar to UP|Q6NQ19 (Q6NQ19) At5g25170, partial (73%) 27 2.8
TC204864 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproli... 27 3.6
TC204866 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproli... 27 3.6
TC208104 weakly similar to UP|Q8H6A9 (Q8H6A9) SET domain protein... 26 4.7
TC231496 26 4.7
>AW185041 homologue to GP|1177607|emb| pva1 {Plasmodium vivax}, partial (6%)
Length = 445
Score = 43.5 bits (101), Expect = 3e-05
Identities = 46/120 (38%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Frame = +3
Query: 8 DQGVQT-GFIWENHLWGDLPNSDHNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGG 66
DQG F NHL NSD N GES + KPLNQ E EA V+KKRN
Sbjct: 63 DQGSHAIDFHLGNHLLVS-SNSD-NSGESKN---NMKPLNQQN--EEGEALVNKKRN--- 212
Query: 67 VVIRSEN---NITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKVN 123
+ I SEN + T+ E D K+ + ++EM FD L LLP+LPS+ +
Sbjct: 213 LEIASENEKAHFTSDEWLDGKHPESNNEM---------------FDDLRGLLPQLPSEAD 347
>TC229276 weakly similar to UP|SRE2_HUMAN (Q12772) Sterol regulatory element
binding protein-2 (SREBP-2) (Sterol regulatory
element-binding transcription factor 2), partial (3%)
Length = 1069
Score = 33.5 bits (75), Expect = 0.030
Identities = 17/37 (45%), Positives = 25/37 (66%), Gaps = 1/37 (2%)
Frame = +2
Query: 83 KKYRDFDHEM-HILTERERRKKMRNMFDSLHALLPEL 118
K+ R F + HIL ER+RR+ + MF +L AL+P+L
Sbjct: 383 KRGRRFSQTLDHILAERKRRENISRMFIALSALIPDL 493
>TC206457 weakly similar to UP|MTD_FRAAN (Q9ZRF1) Probable mannitol
dehydrogenase (NAD-dependent mannitol dehydrogenase) ,
partial (75%)
Length = 1180
Score = 30.8 bits (68), Expect = 0.19
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 11/61 (18%)
Frame = +2
Query: 17 WENHLWGDLPNSDHNL-------GESSKKRVDTKPLNQNEGINEAEAP----VSKKRNWG 65
W++HLWG L N L G+ S + + +N + E P ++ K +WG
Sbjct: 206 WQHHLWGLLSNFCRRLQICGTHSGKPSNGCSGSSAMRRNNSVQSFERPRFGSITGKEDWG 385
Query: 66 G 66
G
Sbjct: 386 G 388
>TC217096 homologue to UP|Q8W1S2 (Q8W1S2) ABC transporter-like protein,
complete
Length = 2478
Score = 30.0 bits (66), Expect = 0.33
Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 44 PLNQNEGINEAEAPVSKKRNWGGVVI--RSENNITTGEEKDKKYRDFDHEMHILTERERR 101
P NEG+++ +AP K G ++ R + + KD++ R+ +++H+ R
Sbjct: 402 PFRMNEGMDDVQAPKKKPEPVDGPLLSERDRLKLERRKRKDERQREAQYQIHLAEMEAAR 581
Query: 102 KKM 104
M
Sbjct: 582 AGM 590
>TC209823
Length = 1092
Score = 29.3 bits (64), Expect = 0.56
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 93 HILTERERRKKMRNMFDSLHALLP 116
H +ER+RRKK+ ++ SL +LLP
Sbjct: 244 HNASERDRRKKVNDLVSSLRSLLP 315
>BG316255
Length = 405
Score = 28.9 bits (63), Expect = 0.73
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +1
Query: 81 KDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPE 117
K+K+ + HI ER RRK+M L +L+PE
Sbjct: 22 KNKEEAETQRITHITVERNRRKQMNEHLVVLRSLMPE 132
>TC234379 similar to UP|Q6K4B1 (Q6K4B1) Helix-loop-helix DNA-binding
protein-like, partial (15%)
Length = 771
Score = 28.9 bits (63), Expect = 0.73
Identities = 29/110 (26%), Positives = 42/110 (37%)
Frame = +1
Query: 17 WENHLWGDLPNSDHNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNIT 76
W++H + D +L + PL + EA A +KR
Sbjct: 16 WDSHSSPEACTVDQSLPRAF-------PLPPSSSSPEAAATGRRKRR------------R 138
Query: 77 TGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKVNSFS 126
T K+K+ + HI ER RRK+M L +L+P PS V S
Sbjct: 139 TKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMP--PSYVQRVS 282
>TC213205
Length = 590
Score = 28.5 bits (62), Expect = 0.95
Identities = 17/59 (28%), Positives = 25/59 (41%)
Frame = +3
Query: 69 IRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKVNSFSS 127
I++E G + +D HI+ ER+RR+ + NMF L V F S
Sbjct: 405 IKNERKYKRGTRSSSQIQD-----HIMNERKRRENLTNMFIDFQPLFQGXXXSVYMFFS 566
>TC213058
Length = 734
Score = 28.5 bits (62), Expect = 0.95
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 27 NSDHNLGESSKKRVDTKPLNQNEG-INEAEAPVSKKRNWGGVVIRSEN 73
NSD+ + + +K TKP +N+G + AE+ V K+R G + + +N
Sbjct: 282 NSDYPIHPNRRKDKRTKPSTENQGKVGFAESGVCKRRRSYGELNKRKN 139
>TC233876 weakly similar to UP|Q731A3 (Q731A3) Stage III sporulation protein
AD, partial (17%)
Length = 459
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/35 (42%), Positives = 23/35 (64%)
Frame = -3
Query: 30 HNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNW 64
H+L +S +KRV++K NE I E E P ++R+W
Sbjct: 178 HSLKQSERKRVESKKTMNNEEIEE-ETP--QERSW 83
>TC210628
Length = 633
Score = 27.7 bits (60), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 77 TGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
T K+K+ + HI ER RRK+M L +L+P
Sbjct: 44 TKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMP 163
>TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008), partial
(11%)
Length = 832
Score = 27.7 bits (60), Expect = 1.6
Identities = 13/45 (28%), Positives = 26/45 (56%)
Frame = +2
Query: 72 ENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
E+ + E ++ R + E+H L+E++RR+K+ +L L+P
Sbjct: 86 EDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIP 220
>TC223575
Length = 802
Score = 27.3 bits (59), Expect = 2.1
Identities = 9/22 (40%), Positives = 17/22 (76%)
Frame = +3
Query: 95 LTERERRKKMRNMFDSLHALLP 116
+ E+ RR +M+N++ L++LLP
Sbjct: 72 IVEKNRRSQMKNLYSELNSLLP 137
>BE020845
Length = 388
Score = 27.3 bits (59), Expect = 2.1
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 70 RSENNITTGEEKDKKYRDFDHE-MHILTERERRKKMRNMFDSLHALLP 116
+S ++ E++D D + + MH TER+RR++M + +L +LLP
Sbjct: 179 KSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLP 322
>TC207991 similar to UP|Q6NQ19 (Q6NQ19) At5g25170, partial (73%)
Length = 1167
Score = 26.9 bits (58), Expect = 2.8
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 1/36 (2%)
Frame = -2
Query: 44 PLNQNEGINEAEA-PVSKKRNWGGVVIRSENNITTG 78
P+N N + +EA P+S NWG VV N + TG
Sbjct: 353 PMNLNTRMVNSEAKPISVTVNWG*VVDVKVNRVQTG 246
>TC204864 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproline-rich
glycoprotein-like protein {Arabidopsis thaliana;} ,
partial (42%)
Length = 746
Score = 26.6 bits (57), Expect = 3.6
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = -1
Query: 88 FDHEMHILTERERRKKMRNMF 108
F+H H+L+E +R++++R++F
Sbjct: 650 FNHIRHLLSETKRKRELRHLF 588
>TC204866 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproline-rich
glycoprotein-like protein {Arabidopsis thaliana;} ,
partial (47%)
Length = 1484
Score = 26.6 bits (57), Expect = 3.6
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = -1
Query: 88 FDHEMHILTERERRKKMRNMF 108
F+H H+L+E +R++++R++F
Sbjct: 338 FNHIRHLLSETKRKRELRHLF 276
>TC208104 weakly similar to UP|Q8H6A9 (Q8H6A9) SET domain protein 110,
partial (10%)
Length = 1580
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -3
Query: 16 IWENHLWGDLPNSDHNLGESSKKRVDTK 43
IWEN G L N DH++ + +K TK
Sbjct: 972 IWENDNEGSLKNLDHDVIKRDEKLFTTK 889
>TC231496
Length = 1295
Score = 26.2 bits (56), Expect = 4.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 77 TGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
T K+ + + HI ER RRK+M L +L+P
Sbjct: 436 TKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMP 555
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,641,739
Number of Sequences: 63676
Number of extensions: 61257
Number of successful extensions: 312
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of query: 131
length of database: 12,639,632
effective HSP length: 86
effective length of query: 45
effective length of database: 7,163,496
effective search space: 322357320
effective search space used: 322357320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148528.1