TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148483.5 + phase: 0 /pseudo
         (281 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI701169                                                               28  0.10
BI784757                                                               33  0.11
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p...    30  1.6
TC222785                                                               28  4.6
TC229117 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization res...    27  7.9

>BI701169 
          Length = 407

 Score = 28.1 bits (61), Expect(2) = 0.10
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 7/27 (25%)
 Frame = +2

Query: 256 MVLRT-------ERKNRTLKNMVRSML 275
           MVLR+       ERKNRT+ NM RSML
Sbjct: 326 MVLRSPQQNGVAERKNRTILNMARSML 406



 Score = 24.3 bits (51), Expect(2) = 0.10
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 169 VPTLVADTS*HL---LMILVEKHGYIF*KRNPEH*RYSSNSRV*LIRNLVA*SSA*DQI 224
           + T   D S H    LMI  EKHG IF   N    R S +S+  L + +V     *D I
Sbjct: 81  IKTSSLDKSNHFFSSLMIFQEKHGCIFLSIN*RCLRISKSSKPLLRKKVVLKLKP*DPI 257


>BI784757 
          Length = 430

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 32/102 (31%), Positives = 52/102 (50%)
 Frame = +2

Query: 137 SNIENLFQRKHNGELQRSLIWFILIYVALLNQVPTLVADTS*HLLMILVEKHGYIF*KRN 196
           SN E L  + +    +R+L  F L+ VAL      +  DTS  LLM  + K+G+  *+  
Sbjct: 89  SNQEALSNKMYQSGQKRNLR*FTLMCVALCKLNLWVETDTSYPLLMN*LGKYGFT**EGR 268

Query: 197 PEH*RYSSNSRV*LIRNLVA*SSA*DQIEVVSILLQSSLNFV 238
               +   +S++     +  *S  *+Q+ VV++ LQ+  NFV
Sbjct: 269 VISLKSLRSSKIWQKSKVAH*SRY*EQMVVVNMFLQNFKNFV 394


>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
           polyprotein, partial (4%)
          Length = 919

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 260 TERKNRTLKNMVRSMLRSK 278
           TERKN+T+ +MVR ML++K
Sbjct: 709 TERKNKTIMDMVRCMLKAK 765



 Score = 29.6 bits (65), Expect = 1.6
 Identities = 28/70 (40%), Positives = 36/70 (51%)
 Frame = +2

Query: 138 NIENLFQRKHNGELQRSLIWFILIYVALLNQVPTLVADTS*HLLMILVEKHGYIF*KRNP 197
           +IENLFQ ++ G  +     FI I V L  Q   +    S  L MIL ++ G IF* RN 
Sbjct: 356 SIENLFQLENLGG*KSC*R*FI*ICVQLRFQHMVITTTLSLSL-MILAKRCGSIF*SRNQ 532

Query: 198 EH*RYSSNSR 207
           +H   S  SR
Sbjct: 533 KHAMPSRCSR 562


>TC222785 
          Length = 277

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 130 AKIAC*GSNIENLFQRKHNGELQRSLIWFILIYVALLNQ 168
           A+I   GSN +     K  GEL +S  WFI+ YV  L+Q
Sbjct: 150 ARIVLWGSNKDIHIG*KALGELHKSCNWFIVKYVG*LSQ 266


>TC229117 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization response 1,
           partial (38%)
          Length = 904

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = +1

Query: 240 QTKSEGNLLHLTHLNKMVLRTE 261
           Q K +G L+H  HLN+++L  E
Sbjct: 316 QKKEKGQLMHQKHLNQLILSAE 381


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.355    0.157    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,332
Number of Sequences: 63676
Number of extensions: 116709
Number of successful extensions: 1244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of query: 281
length of database: 12,639,632
effective HSP length: 96
effective length of query: 185
effective length of database: 6,526,736
effective search space: 1207446160
effective search space used: 1207446160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 58 (26.9 bits)