BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148403.6 - phase: 0 /pseudo
(1428 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234828 57 6e-08
BU549069 44 5e-04
NP595172 polyprotein [Glycine max] 35 0.24
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 35 0.31
BM731380 34 0.40
BE348096 33 1.2
TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%) 33 1.2
CO985160 32 1.5
BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata},... 32 2.0
TC230065 similar to UP|O14329 (O14329) SPBC16E9.14c protein, par... 32 2.0
TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like,... 32 2.6
AW666189 similar to PIR|JN0505|JN05 protein kinase (EC 2.7.1.37)... 31 4.5
BM086635 30 5.8
TC216570 similar to GB|AAO63420.1|28950993|BT005356 At5g28040 {A... 30 5.8
TC210182 similar to UP|Q9AVE4 (Q9AVE4) DNA-binding protein DF1, ... 30 7.6
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 30 7.6
TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein,... 30 7.6
TC221301 weakly similar to UP|Q9SJ50 (Q9SJ50) At2g36000/F11F19.9... 30 9.9
TC208668 homologue to UP|Q9NGW8 (Q9NGW8) Developmental protein D... 30 9.9
TC225464 GB|AAB68399.1|1773321|HAU79736 calmodulin {Helianthus a... 30 9.9
>TC234828
Length = 857
Score = 57.0 bits (136), Expect = 6e-08
Identities = 77/272 (28%), Positives = 111/272 (40%), Gaps = 13/272 (4%)
Frame = +1
Query: 268 VTLVHSVLSLRGRRLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLS 327
V L + L + ++ + LL*+V ++ +* V L+I *+ +I V I+ L
Sbjct: 82 VMLATTTLVVEDQKYPLGYLL*VVQKRLPPTI*YGVSV*LLINY*MYFMIQVPRILSYLM 261
Query: 328 IVFLLWVLIFLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLVVISKWI*FVYL*AVWM*F 387
V+ W + W L+ * L *+VL L V + *F YL* + M*
Sbjct: 262 HVWRGWGYVRRSCHMIWWCLLRRASL*PPLGCA*SVL*LLRVDLLWRT*FAYL*LI*M*S 441
Query: 388 WV*TG*STTTFLLIV------LASQYISL-------PSKRKVV*SFYLLSS*SNWNATVS 434
W G T V L + P+K++ + S W T+
Sbjct: 442 WEWIGYLLTISF*TVRRRC*CLVEM*FQVNH*KRMQPTKKRKMFELTWCCSLCMWKRTLK 621
Query: 435 *CFR*WLLYLLRIKQ*LIGYRWCVIFLKFFQMRFLMCLQREKLSFLLILSLERSRSRWHL 494
L+ YRWC F KFF+M F+ C REK + LL L R + R L
Sbjct: 622 ----------------LVVYRWCQNFQKFFRMMFVNCHLREKWNSLLTWCLGRIQCRLRL 753
Query: 495 IVCLLLSYLS*RNSWRTCLRRSLLDQVFHLGE 526
I CL + *R+ +RT +L Q H GE
Sbjct: 754 IECLRWN*QR*RHKYRTF*ANNLFVQAHHRGE 849
>BU549069
Length = 615
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/66 (39%), Positives = 35/66 (52%)
Frame = -3
Query: 1288 ESHSYDWCRTCLEVKKVDPEVYWSVSDIGKSWNGGLPSGFTAASFEFAQRFPCVSTSKVS 1347
ESHS DW + E+ K +Y S + KS + G+P+ T +F +Q CVST V
Sbjct: 613 ESHSKDWGWSSTEIPKTHTSLYRSFPNS*KSXSCGIPNCITPITF*SSQCLSCVSTPYVY 434
Query: 1348 SGSISC 1353
SISC
Sbjct: 433 P*SISC 416
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 35.0 bits (79), Expect = 0.24
Identities = 34/110 (30%), Positives = 53/110 (47%)
Frame = +2
Query: 509 WRTCLRRSLLDQVFHLGEHRFC**RRKMVVCGYVLIIDS*IK*LSRIGIHFRELMI*WIS 568
++ C ++ +QV + +C RRKM V II+ *++ L RI ++ M ++
Sbjct: 1850 YKKCWFKASFNQVTVHFPYPYCLLRRKMEVGDSAQIIEL*MQSL*RIAFQCQQWMNC*MN 2029
Query: 569 *WVHVFLARLI*GQVITRLK*RMKICRRQLSERVMVIMNIKLCLLVLPMH 618
I*GQ + ++I R+ L E +M IMN C LVL MH
Sbjct: 2030 YMELNIFQNWI*GQDTIKFWYSLRIERKLLLEHIMAIMNG**CHLVLLMH 2179
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 34.7 bits (78), Expect = 0.31
Identities = 18/37 (48%), Positives = 30/37 (80%)
Frame = -1
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
+L + ++LL LLLL+L+L ++LLL ++FLL +L +LI
Sbjct: 121 LLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLLGYLI 11
Score = 33.1 bits (74), Expect = 0.90
Identities = 16/36 (44%), Positives = 29/36 (80%)
Frame = -1
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFL 338
+L +L++ L LLLL+L+L ++LLL ++ LL++L+ L
Sbjct: 130 LLLLLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLL 23
Score = 31.6 bits (70), Expect = 2.6
Identities = 16/36 (44%), Positives = 27/36 (74%)
Frame = -1
Query: 304 LAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
L +L++L LLLL+L+L ++LLL ++ LL L+ L+
Sbjct: 130 LLLLLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLL 23
>BM731380
Length = 433
Score = 34.3 bits (77), Expect = 0.40
Identities = 18/37 (48%), Positives = 29/37 (77%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
VL +L+++L LLL++L+L VLLL +VFLL + + L+
Sbjct: 287 VLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLL 397
Score = 33.9 bits (76), Expect = 0.53
Identities = 23/55 (41%), Positives = 37/55 (66%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLL 357
VL + ++L+ LLLL+L+L +VLLL + LL +L+FL+ ++ L L L + LL
Sbjct: 269 VLGLYLVLV-LLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLLLAQFLL 430
Score = 32.0 bits (71), Expect = 2.0
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +2
Query: 310 LL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLV 369
LL LLLL+LVL + L L +V LL VL+ L+ + L L L + LLL VL L LV
Sbjct: 236 LLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLL---QVLLLLLV 406
Query: 370 VI 371
++
Sbjct: 407 LL 412
Score = 32.0 bits (71), Expect = 2.0
Identities = 26/58 (44%), Positives = 37/58 (62%)
Frame = +2
Query: 282 LLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
LL+ LL LVL +V +L +L++LL LLLL+ VL +LLL + LL VL+ L+
Sbjct: 236 LLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVL--LLLLVFLLLLQVLLLLL 403
Score = 31.6 bits (70), Expect = 2.6
Identities = 23/57 (40%), Positives = 36/57 (62%)
Frame = +2
Query: 304 LAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLLSYV 360
L +L++LL +L+L L L +VLLL ++ LL VL+ L+ + L L ++ LLL V
Sbjct: 236 LLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLV 406
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/58 (37%), Positives = 37/58 (62%)
Frame = +2
Query: 282 LLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
LL+ LL LVL +V ++ +L+++L LLL +L+L +V LL + LL +L+ L+
Sbjct: 242 LLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLLL 415
>BE348096
Length = 445
Score = 32.7 bits (73), Expect = 1.2
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 805 KR*SGSLCFKTVENS*EELSYA*SRVSGRSLCIEDMETL 843
+R S LC ++S ++LSYA*SRV +C+ +E L
Sbjct: 187 RRPSSDLCSSIGQDSLKDLSYA*SRVGSHGVCLHILEAL 71
>TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%)
Length = 1689
Score = 32.7 bits (73), Expect = 1.2
Identities = 16/34 (47%), Positives = 28/34 (82%)
Frame = +2
Query: 306 ILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
++ +LL LLLL+L+L ++LLLS++ LL +L+ L+
Sbjct: 368 MVTVLLLLLLLLLLLLLLLLLSLLLLLLLLLLLL 469
Score = 32.0 bits (71), Expect = 2.0
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLL 332
VL +L++LL LLLL+L+L ++LLL ++ LL
Sbjct: 377 VLLLLLLLLLLLLLLLLLSLLLLLLLLLLL 466
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/47 (38%), Positives = 34/47 (72%)
Frame = +2
Query: 293 RQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
R R I+ + +L +L++LL LLLL+L+ ++LLL ++ LL +++L+
Sbjct: 350 RFRK*IMVTVLLLLLLLLLLLLLLLLLSLLLLLLLLLLLLH*VLYLL 490
Score = 29.6 bits (65), Expect = 9.9
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
+L +L++LL LLLL+L L ++LLL ++ L VL L+
Sbjct: 383 LLLLLLLLLLLLLLLLSLLLLLLLLLLLLH*VLYLLL 493
>CO985160
Length = 777
Score = 32.3 bits (72), Expect = 1.5
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +3
Query: 271 VHSVLSLRGRRLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVF 330
+ +L L+ R+LL+ LL L+L+ R ++L +L+ L LLLL+L L +LLL +
Sbjct: 426 LRKLLLLQLRKLLLLDLLLLLLQLR------KLLLLLLQLRKLLLLLLQLRKLLLLLLEL 587
Query: 331 LLWVLIFLI*MERWLSKLQLR------VR*LLL 357
+L+ L + L L+LR VR*LLL
Sbjct: 588 RKLLLLLLQLRKLLLLLLELRKLLLLHVR*LLL 686
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +3
Query: 282 LLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*M 341
LL+ L L+L Q +++ ++L +L+ L LLLL+L L +LLL + +L+ L
Sbjct: 411 LLLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELR 590
Query: 342 ERWLSKLQLRVR*LLLSYV*NVLCL 366
+ L LQLR LLL + +L L
Sbjct: 591 KLLLLLLQLRKLLLLLLELRKLLLL 665
>BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata}, partial
(4%)
Length = 414
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/56 (42%), Positives = 36/56 (63%)
Frame = -2
Query: 309 ILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLLSYV*NVL 364
ILL LLLL+L+L ++LLL ++ LL +L + + L + LR+ *LLL + N L
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLLLVDILLRIL*LLLLLLGNNL 240
>TC230065 similar to UP|O14329 (O14329) SPBC16E9.14c protein, partial (6%)
Length = 610
Score = 32.0 bits (71), Expect = 2.0
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 314 LLLILVLHIVLLLSIVFLLWVLIFLI*MERWLS 346
L L L L +VLLLS++FL W L L+ + LS
Sbjct: 202 LTLTLTLQLVLLLSLLFLTWTLFSLLTLSHLLS 300
>TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like, partial
(57%)
Length = 926
Score = 31.6 bits (70), Expect = 2.6
Identities = 14/29 (48%), Positives = 24/29 (82%)
Frame = -3
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFL 331
+L +L++LL LLLL+L+LH+ LL+++ L
Sbjct: 555 LLLLLLLLLLLLLLLLLLHLHFLLTLIIL 469
>AW666189 similar to PIR|JN0505|JN05 protein kinase (EC 2.7.1.37) 5 -
Arabidopsis thaliana, partial (4%)
Length = 256
Score = 30.8 bits (68), Expect = 4.5
Identities = 14/32 (43%), Positives = 25/32 (77%)
Frame = -2
Query: 308 IILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
++LL +LLL++ + IVLLL ++ L W+LI ++
Sbjct: 201 VLLLLILLLVIFM*IVLLLLLIKLGWLLILVL 106
>BM086635
Length = 428
Score = 30.4 bits (67), Expect = 5.8
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +3
Query: 298 IV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLW 333
IV + +A+L++LL LLLL+L+L ++LLL +V +W
Sbjct: 138 IVQRDFVALLLLLL-LLLLLLLLLLLLLLLLVHSVW 242
>TC216570 similar to GB|AAO63420.1|28950993|BT005356 At5g28040 {Arabidopsis
thaliana;} , partial (26%)
Length = 1084
Score = 30.4 bits (67), Expect = 5.8
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +1
Query: 294 QRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVL 335
+RT I+ VLAIL +LL LLLL L+L ++L+L+I+ + V+
Sbjct: 325 RRTEII--IVLAILHLLLLLLLLTLLLLLLLVLTIITVTVVM 444
>TC210182 similar to UP|Q9AVE4 (Q9AVE4) DNA-binding protein DF1, partial
(13%)
Length = 918
Score = 30.0 bits (66), Expect = 7.6
Identities = 12/41 (29%), Positives = 28/41 (68%)
Frame = -3
Query: 317 ILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLL 357
I++ H++L+L+++F++ +++ + + RW L L + LLL
Sbjct: 598 IIINHLILILTLIFIISLILISLSIFRW*LSLSLHLLLLLL 476
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 30.0 bits (66), Expect = 7.6
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -1
Query: 301 SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
S + +L++ L*LLLL L L ++LLL ++ LL +L+ L+
Sbjct: 131 SPIPTLLLLRL*LLLLRLWLLLLLLLLLLLLLLLLLLLL 15
>TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein, partial
(8%)
Length = 677
Score = 30.0 bits (66), Expect = 7.6
Identities = 15/39 (38%), Positives = 29/39 (73%)
Frame = -3
Query: 305 AILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MER 343
A+L+++L LLL++L+L ++LLL ++ L +++ L ER
Sbjct: 387 ALLLLMLLLLLMLLLLLLMLLLLLMLLSLLMLLLRCQER 271
Score = 30.0 bits (66), Expect = 7.6
Identities = 13/30 (43%), Positives = 26/30 (86%)
Frame = -3
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLL 332
+L +L++L+ LLLL+++L +++LLS++ LL
Sbjct: 378 LLMLLLLLMLLLLLLMLLLLLMLLSLLMLL 289
>TC221301 weakly similar to UP|Q9SJ50 (Q9SJ50) At2g36000/F11F19.9, partial
(48%)
Length = 835
Score = 29.6 bits (65), Expect = 9.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 92 GRRRSSSLS*SKETCL*QSMLPSLWSCQSSTRTTLLRMLSS 132
G SS+L SK CL S +P LW R+ LL +L+S
Sbjct: 189 GMNFSSTLHDSKSVCLFTSSMPILWRKYRVGRSRLLTLLTS 67
>TC208668 homologue to UP|Q9NGW8 (Q9NGW8) Developmental protein DG1037
(Fragment), partial (4%)
Length = 1021
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2
Query: 309 ILL*LLLLILVLHIVLLLSIVFLLWVLI 336
ILL LLLL+L+L ++LLL ++ LL VL+
Sbjct: 209 ILLLLLLLLLLLLLLLLLLLLLLLQVLV 292
>TC225464 GB|AAB68399.1|1773321|HAU79736 calmodulin {Helianthus annuus;} ,
partial (79%)
Length = 788
Score = 29.6 bits (65), Expect = 9.9
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Frame = +2
Query: 282 LLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*M 341
LLVE L L T + L+ L L+ + V H LLLS+ W+L+ L+*
Sbjct: 476 LLVECLFFLFALIATTSLLPSYPTCLLCPLFLVASVAVSHHALLLSVFIFFWLLLLLL*T 655
Query: 342 -ERWLSKLQLRVR*LLLSYV*NVLCLCLVVI-------SKWI*FV 378
W+ + L+L + + C +V++ S W+* V
Sbjct: 656 *NNWMHLCFFKCGWLML-LIFYIFCHVIVIMIILNSMQSAWV*IV 787
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.368 0.165 0.613
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,013,120
Number of Sequences: 63676
Number of extensions: 1005466
Number of successful extensions: 14941
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5898
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 8084
Number of HSP's gapped (non-prelim): 7630
length of query: 1428
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1319
effective length of database: 5,698,948
effective search space: 7516912412
effective search space used: 7516912412
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148403.6