TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147875.9 + phase: 0 
         (122 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234121                                                               26  2.2
CO979501                                                               25  5.0
BQ297380 similar to GP|7716470|gb|A hypersensitive-induced respo...    25  6.5
TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced re...    25  6.5
BI787980 similar to SP|P25387|GBLP Guanine nucleotide-binding pr...    24  8.5

>TC234121 
          Length = 400

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +3

Query: 99  KTKGPLQKGQPEEQMHRRF 117
           K KGP++KGQP     +RF
Sbjct: 141 KEKGPVEKGQPAALREKRF 197


>CO979501 
          Length = 710

 Score = 25.0 bits (53), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (54%)
 Frame = -3

Query: 33  HGVMVVRRNENYEYAQVMRELEYLKKELF 61
           HG+  +R N N+     +  L YL+ E+F
Sbjct: 210 HGISCIR*NSNFLCDSEIESLSYLELEIF 124


>BQ297380 similar to GP|7716470|gb|A hypersensitive-induced response protein
           {Zea mays}, partial (15%)
          Length = 409

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 98  SKTKGPLQKGQPEEQMHRRFINFHT 122
           S+ K  L+  +     HRR INFHT
Sbjct: 363 SRLKYLLKSSKSFSHSHRRLINFHT 289


>TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced response
           protein, partial (81%)
          Length = 777

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 98  SKTKGPLQKGQPEEQMHRRFINFHT 122
           S+ K  L+  +     HRR INFHT
Sbjct: 169 SRLKYLLKSSKSFSHSHRRLINFHT 95


>BI787980 similar to SP|P25387|GBLP Guanine nucleotide-binding protein beta
           subunit-like protein. {Chlamydomonas reinhardtii},
           partial (33%)
          Length = 421

 Score = 24.3 bits (51), Expect = 8.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 15  AKAKMKDIETLEKKGKGQHGVMVV 38
           A+ + + +  L  +G+G+HG+ VV
Sbjct: 122 ARGRQQQVRVLAGRGEGRHGLAVV 51


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,618,861
Number of Sequences: 63676
Number of extensions: 14534
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 122
length of database: 12,639,632
effective HSP length: 98
effective length of query: 24
effective length of database: 6,399,384
effective search space: 153585216
effective search space used: 153585216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)