TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147472.6 + phase: 0 /pseudo
         (180 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230785 homologue to GB|AAO63344.1|28950841|BT005280 At1g02410 ...   218  1e-57
AW234802                                                               71  3e-13
TC211585 similar to GB|AAO63344.1|28950841|BT005280 At1g02410 {A...    66  8e-12
BU090536                                                               26  8.9

>TC230785 homologue to GB|AAO63344.1|28950841|BT005280 At1g02410 {Arabidopsis
           thaliana;} , partial (41%)
          Length = 857

 Score =  218 bits (555), Expect = 1e-57
 Identities = 103/113 (91%), Positives = 107/113 (94%)
 Frame = +2

Query: 63  VVQFNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGV 122
           VVQFNADI+DGM WKF+PTQREVRVKPGESALAFYT EN+SSTPITGVSTYNVTPMK  V
Sbjct: 2   VVQFNADIADGMQWKFVPTQREVRVKPGESALAFYTAENKSSTPITGVSTYNVTPMKAAV 181

Query: 123 YFNKIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
           YFNKIQCFCFEEQRLLPGE+IDMPVFFYIDPE E DPKMNGINNIILSYTFFK
Sbjct: 182 YFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMNGINNIILSYTFFK 340


>AW234802 
          Length = 419

 Score = 70.9 bits (172), Expect = 3e-13
 Identities = 33/37 (89%), Positives = 36/37 (97%)
 Frame = +1

Query: 84  EVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKL 120
           +VRVKPGESALAFYT EN+SSTPITGVSTYNVTPMK+
Sbjct: 10  QVRVKPGESALAFYTAENKSSTPITGVSTYNVTPMKV 120


>TC211585 similar to GB|AAO63344.1|28950841|BT005280 At1g02410 {Arabidopsis
          thaliana;} , partial (16%)
          Length = 144

 Score = 66.2 bits (160), Expect = 8e-12
 Identities = 34/48 (70%), Positives = 37/48 (76%)
 Frame = +1

Query: 6  LTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDS 53
          LTGL F M   T +A+ PLYR FCQAT Y GTVTRRE VEEKIARHD+
Sbjct: 4  LTGLVFAMVGCT-YAAVPLYRRFCQATGYGGTVTRRETVEEKIARHDT 144


>BU090536 
          Length = 418

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
 Frame = +2

Query: 96  FYTVENQSSTPITGVSTYNVTPMKL----------------------GVYFNKIQCFCFE 133
           F T+ NQ    I   STY   P  L                      G Y NK +C C+ 
Sbjct: 119 FSTL*NQDEGSICSCSTYMPCPQPLLVRGVNGWFCGICCSKCNCVPSGTYGNKHECPCYR 298

Query: 134 EQRLLPGE-KIDMPVFFYIDPEIEDDPKMNGINNIILS 170
           + +   G+ K     FF+  P I   P +  +  + +S
Sbjct: 299 DMKNSKGKAKCP*LFFFFHHPHINFKPLIQSLPCMYIS 412


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,571,634
Number of Sequences: 63676
Number of extensions: 89415
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of query: 180
length of database: 12,639,632
effective HSP length: 91
effective length of query: 89
effective length of database: 6,845,116
effective search space: 609215324
effective search space used: 609215324
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)