TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147429.6 - phase: 0 /pseudo
         (974 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)    33  0.61
BM891241                                                               33  0.80
TC224657 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly...    31  3.0

>TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)
          Length = 843

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 272 LCIVSKLLLFMLSLMVNLLR-LFPPERSKARRSPVSLPLHH 311
           LC+ + LLL +L L+ +LL  L PP       SP +LPLHH
Sbjct: 755 LCLCALLLLLLLLLLHSLLLFLLPPPLPFFVASPCALPLHH 633


>BM891241 
          Length = 407

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = -3

Query: 439 RKFIG*KDLSFLSLSLRGVWISEL*GSSIWPCLLNKFGAFTLNLNLLSLGVSRQSISPIL 498
           RKF+G*    F    LRGVW S++  +SI  C  N +G   L  +   L +  QS+   L
Sbjct: 387 RKFLG*NGRLFACPRLRGVWGSKISPNSI*LCWANGYGP*LLISSSYGLELLIQSMEAGL 208

Query: 499 MF 500
           +F
Sbjct: 207 IF 202


>TC224657 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
           (Fragment), partial (50%)
          Length = 586

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +1

Query: 684 TVLYFALDAMLK*KTLHIPF*PVLISLRFGLVLAWLLDLQTPLTQTAST--GYMKSYPTR 741
           T+ + +   +L   T  IP   V I L+       +      L++++ST   +  S+P+ 
Sbjct: 1   TISFSSSSLLLPLSTTTIPITAVSILLQIPSTSISISTTSLLLSKSSSTISHFSSSFPSS 180

Query: 742 TNLPLFKLHLLSIIFGIQETYACSKTNTYLMLTSS--SVLKDASRTFTVLK 790
            +    ++HL   I      Y C  T+TYL ++S+  S + D S  FT+LK
Sbjct: 181 CS----QVHLQ--ITSTSGLYLCFPTSTYLQVSSNCESTIHDESCKFTILK 315


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.363    0.165    0.602 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,399,258
Number of Sequences: 63676
Number of extensions: 657724
Number of successful extensions: 6596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3695
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 2822
Number of HSP's gapped (non-prelim): 4113
length of query: 974
length of database: 12,639,632
effective HSP length: 106
effective length of query: 868
effective length of database: 5,889,976
effective search space: 5112499168
effective search space used: 5112499168
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 64 (29.3 bits)