BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146865.2 - phase: 0
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216357 homologue to GB|AAM70547.1|21700847|AY124838 AT3g07590/... 215 3e-57
TC206156 homologue to UP|Q9SY09 (Q9SY09) Small nuclear riboprote... 212 3e-56
TC206155 homologue to GB|AAM70547.1|21700847|AY124838 AT3g07590/... 212 3e-56
TC206491 homologue to UP|Q9LM92 (Q9LM92) F2D10.7 (At1g20580/F2D1... 58 8e-10
TC206490 homologue to UP|Q9LM92 (Q9LM92) F2D10.7 (At1g20580/F2D1... 58 8e-10
TC208462 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-a... 58 8e-10
TC227084 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-a... 57 2e-09
TC216338 similar to UP|O19031 (O19031) Bactinecin 11, partial (7%) 40 1e-04
TC216337 similar to UP|Q7XJ13 (Q7XJ13) Chloroplast nucleoid DNA-... 38 9e-04
AW311339 similar to GP|18146720|dbj ribosomal protein S2 {Arabid... 38 9e-04
CO978700 37 0.001
TC225776 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 37 0.001
TC227085 homologue to UP|LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-a... 37 0.002
TC227857 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarit... 37 0.002
TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains EST... 35 0.004
TC226509 similar to GB|BAC55689.1|27817924|AP003940 contains EST... 35 0.004
TC225778 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 35 0.006
TC212981 similar to UP|BCT7_BOVIN (P19661) Bactenecin 7 precurso... 35 0.006
TC224592 similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, parti... 34 0.009
TC217547 weakly similar to UP|Q61869 (Q61869) Keratin 2 epidermi... 33 0.028
>TC216357 homologue to GB|AAM70547.1|21700847|AY124838 AT3g07590/MLP3_4
{Arabidopsis thaliana;} , complete
Length = 809
Score = 215 bits (547), Expect = 3e-57
Identities = 104/107 (97%), Positives = 107/107 (99%)
Frame = +2
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY
Sbjct: 164 MKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 343
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
YILPDSLNLETLLVEEAP++KPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 344 YILPDSLNLETLLVEEAPKIKPKKPTAGKPLGRGRGRGRGRGRGRGR 484
>TC206156 homologue to UP|Q9SY09 (Q9SY09) Small nuclear riboprotein Sm-D1,
partial (98%)
Length = 842
Score = 212 bits (539), Expect = 3e-56
Identities = 103/106 (97%), Positives = 105/106 (98%)
Frame = +1
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY
Sbjct: 175 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 354
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
YILPDSLNLETLLVEE P++KPKKPTAGKPLGRGRGRGRGRGRGRG
Sbjct: 355 YILPDSLNLETLLVEETPKIKPKKPTAGKPLGRGRGRGRGRGRGRG 492
>TC206155 homologue to GB|AAM70547.1|21700847|AY124838 AT3g07590/MLP3_4
{Arabidopsis thaliana;} , complete
Length = 985
Score = 212 bits (539), Expect = 3e-56
Identities = 103/106 (97%), Positives = 105/106 (98%)
Frame = +1
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY
Sbjct: 133 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 312
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
YILPDSLNLETLLVEE P++KPKKPTAGKPLGRGRGRGRGRGRGRG
Sbjct: 313 YILPDSLNLETLLVEETPKIKPKKPTAGKPLGRGRGRGRGRGRGRG 450
>TC206491 homologue to UP|Q9LM92 (Q9LM92) F2D10.7 (At1g20580/F2D10_6),
partial (80%)
Length = 1224
Score = 57.8 bits (138), Expect = 8e-10
Identities = 34/114 (29%), Positives = 56/114 (48%), Gaps = 11/114 (9%)
Frame = +2
Query: 4 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYIL 63
+ V++ELK+G + G++ + + N L+++ T K L+H+ +RG+ +R+ ++
Sbjct: 560 SGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVI 739
Query: 64 PDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGR-----------GRGRGRGRG 106
PD L + R+K K G LG GRGR GRG GRG
Sbjct: 740 PDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGAAPGRG 889
>TC206490 homologue to UP|Q9LM92 (Q9LM92) F2D10.7 (At1g20580/F2D10_6),
partial (85%)
Length = 588
Score = 57.8 bits (138), Expect = 8e-10
Identities = 34/114 (29%), Positives = 56/114 (48%), Gaps = 11/114 (9%)
Frame = +2
Query: 4 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYIL 63
+ V++ELK+G + G++ + + N L+++ T K L+H+ +RG+ +R+ ++
Sbjct: 119 SGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVI 298
Query: 64 PDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGR-----------GRGRGRGRG 106
PD L + R+K K G LG GRGR GRG GRG
Sbjct: 299 PDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGAAPGRG 448
>TC208462 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10),
partial (94%)
Length = 794
Score = 57.8 bits (138), Expect = 8e-10
Identities = 38/98 (38%), Positives = 49/98 (49%), Gaps = 1/98 (1%)
Frame = +3
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 68
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 177 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 350
Query: 69 LETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
V + + + K T KP G GRGRGRGR G G
Sbjct: 351 -----VIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG 449
>TC227084 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10),
partial (83%)
Length = 926
Score = 56.6 bits (135), Expect = 2e-09
Identities = 37/98 (37%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +3
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 68
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 198 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 371
Query: 69 LETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
V + + + K KP G GRGRGRGR G G
Sbjct: 372 -----VIDKVQEETKSRADRKPPGVGRGRGRGREEGPG 470
>TC216338 similar to UP|O19031 (O19031) Bactinecin 11, partial (7%)
Length = 420
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 90 PLGRGRGRGRGRGRGRGR 107
P GRGRGRGRGRGRGRGR
Sbjct: 70 PRGRGRGRGRGRGRGRGR 123
Score = 37.0 bits (84), Expect = 0.001
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 90 PLGRGRGRGRGRGRGRGR 107
P RGRGRGRGRGRGRGR
Sbjct: 64 PPPRGRGRGRGRGRGRGR 117
Score = 34.7 bits (78), Expect = 0.007
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = +1
Query: 85 PTAGKPLGRGRGRGRGRGRGR 105
P + GRGRGRGRGRGRGR
Sbjct: 61 PPPPRGRGRGRGRGRGRGRGR 123
>TC216337 similar to UP|Q7XJ13 (Q7XJ13) Chloroplast nucleoid DNA-binding
protein-like protein, partial (21%)
Length = 1139
Score = 37.7 bits (86), Expect = 9e-04
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 90 PLGRGRGRGRGRGRGRGR 107
P GRGRGRGRGRGRGR R
Sbjct: 798 PRGRGRGRGRGRGRGRDR 851
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 89 KPLGRGRGRGRGRGRGRGR 107
+P RGRGRGRGRGRGRGR
Sbjct: 789 QPPPRGRGRGRGRGRGRGR 845
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 88 GKPLGRGRGRGRGRGRGRG 106
G P RGRGRGRGRGRGRG
Sbjct: 573 GSPRMRGRGRGRGRGRGRG 629
Score = 33.9 bits (76), Expect = 0.012
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 92 GRGRGRGRGRGRGRG 106
GRGRGRGRGRGR RG
Sbjct: 810 GRGRGRGRGRGRDRG 854
Score = 33.1 bits (74), Expect = 0.021
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 88 GKPLGRGRGRGRGRGRGRGR 107
G+ R RGRGRGRGRGRGR
Sbjct: 567 GEGSPRMRGRGRGRGRGRGR 626
Score = 33.1 bits (74), Expect = 0.021
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 85 PTAGKPLGRGRGRGRGRGRG 104
P G+ GRGRGRGRGR RG
Sbjct: 795 PPRGRGRGRGRGRGRGRDRG 854
Score = 31.6 bits (70), Expect = 0.061
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = +3
Query: 79 RVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+VKP + G R RGRGRGRGRGR
Sbjct: 534 QVKPLNEYEEEGEGSPRMRGRGRGRGRGR 620
Score = 28.5 bits (62), Expect = 0.52
Identities = 19/53 (35%), Positives = 21/53 (38%), Gaps = 20/53 (37%)
Frame = +3
Query: 75 EEAPRVKPKKPTAGKPLGRGRGR--------------------GRGRGRGRGR 107
EE P+ G+ GRGRGR GRGRGR RGR
Sbjct: 558 EEEGEGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRGYGGRGRGRARGR 716
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 81 KPKKPTAGKPLGRGRGRGRGRG 102
+P G+ GRGRGRGR RG
Sbjct: 789 QPPPRGRGRGRGRGRGRGRDRG 854
>AW311339 similar to GP|18146720|dbj ribosomal protein S2 {Arabidopsis
thaliana}, partial (6%)
Length = 358
Score = 37.7 bits (86), Expect = 9e-04
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 90 PLGRGRGRGRGRGRGRGR 107
P GRGRGRGRGRGRGR R
Sbjct: 57 PRGRGRGRGRGRGRGRDR 110
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 89 KPLGRGRGRGRGRGRGRGR 107
+P RGRGRGRGRGRGRGR
Sbjct: 48 QPPPRGRGRGRGRGRGRGR 104
Score = 33.9 bits (76), Expect = 0.012
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 92 GRGRGRGRGRGRGRG 106
GRGRGRGRGRGR RG
Sbjct: 69 GRGRGRGRGRGRDRG 113
Score = 33.1 bits (74), Expect = 0.021
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 85 PTAGKPLGRGRGRGRGRGRG 104
P G+ GRGRGRGRGR RG
Sbjct: 54 PPRGRGRGRGRGRGRGRDRG 113
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 81 KPKKPTAGKPLGRGRGRGRGRG 102
+P G+ GRGRGRGR RG
Sbjct: 48 QPPPRGRGRGRGRGRGRGRDRG 113
>CO978700
Length = 728
Score = 37.4 bits (85), Expect = 0.001
Identities = 15/16 (93%), Positives = 16/16 (99%)
Frame = -1
Query: 92 GRGRGRGRGRGRGRGR 107
GRGRGRGRG+GRGRGR
Sbjct: 236 GRGRGRGRGKGRGRGR 189
Score = 37.4 bits (85), Expect = 0.001
Identities = 15/16 (93%), Positives = 16/16 (99%)
Frame = -1
Query: 92 GRGRGRGRGRGRGRGR 107
GRGRGRG+GRGRGRGR
Sbjct: 230 GRGRGRGKGRGRGRGR 183
Score = 34.7 bits (78), Expect = 0.007
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1
Query: 88 GKPLGRGRGRGRGRGRGR 105
G+ GRGRG+GRGRGRGR
Sbjct: 236 GRGRGRGRGKGRGRGRGR 183
>TC225776 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (26%)
Length = 1663
Score = 37.4 bits (85), Expect = 0.001
Identities = 20/34 (58%), Positives = 22/34 (63%), Gaps = 5/34 (14%)
Frame = +1
Query: 79 RVKPKK-----PTAGKPLGRGRGRGRGRGRGRGR 107
R +PKK AG+ GRGRGRG G GRGRGR
Sbjct: 682 RGRPKKYADEMVAAGRGRGRGRGRGGGGGRGRGR 783
>TC227085 homologue to UP|LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 2), partial
(61%)
Length = 758
Score = 36.6 bits (83), Expect = 0.002
Identities = 30/97 (30%), Positives = 37/97 (37%)
Frame = +1
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNL 69
++LKNG +G + D MN HL+ V T K + D +
Sbjct: 187 VDLKNGETYNGHLVNCDTWMNIHLREVICTSK---------------------VIDKVQE 303
Query: 70 ETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
ET K KP G GRGRGRGR G G
Sbjct: 304 ET-----------KSRADRKPPGVGRGRGRGREEGPG 381
>TC227857 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity to
RNA-binding protein from Arabidopsis thaliana gi|2129727
and contains RNA recognition PF|00076 domain, partial
(37%)
Length = 995
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 88 GKPLGRGRGRGRGRGRGRGR 107
G GRGRGRGRGRGRG GR
Sbjct: 119 GLDRGRGRGRGRGRGRGMGR 178
Score = 36.2 bits (82), Expect = 0.002
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 92 GRGRGRGRGRGRGRGR 107
GRGRGRGRGRG GRGR
Sbjct: 137 GRGRGRGRGRGMGRGR 184
Score = 33.5 bits (75), Expect = 0.016
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = +2
Query: 88 GKPLGRGRGRGRGRGRGR 105
G+ GRGRGRGRG GRGR
Sbjct: 131 GRGRGRGRGRGRGMGRGR 184
Score = 29.3 bits (64), Expect = 0.30
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 6/26 (23%)
Frame = +2
Query: 88 GKPLGRGR---GRG---RGRGRGRGR 107
G GRGR GRG RGRGRGRGR
Sbjct: 77 GSDTGRGREYGGRGGLDRGRGRGRGR 154
>TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains ESTs
AU077521(C52420),AU077522(C52420) snRNP core Sm protein
Sm-X5-like protein {Oryza sativa (japonica
cultivar-group);} , complete
Length = 562
Score = 35.4 bits (80), Expect = 0.004
Identities = 21/68 (30%), Positives = 39/68 (56%), Gaps = 3/68 (4%)
Frame = +1
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHLSVRGNNIRYYIL-P 64
V +ELKN + GT+ VD +N L+ + + K P +++ + +RG+ +RY L P
Sbjct: 127 VIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNCFIRGSVVRYVQLPP 306
Query: 65 DSLNLETL 72
+ +++E L
Sbjct: 307 EGVDIELL 330
>TC226509 similar to GB|BAC55689.1|27817924|AP003940 contains ESTs
AU077521(C52420),AU077522(C52420) snRNP core Sm protein
Sm-X5-like protein {Oryza sativa (japonica
cultivar-group);} , complete
Length = 660
Score = 35.4 bits (80), Expect = 0.004
Identities = 21/68 (30%), Positives = 39/68 (56%), Gaps = 3/68 (4%)
Frame = +2
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHLSVRGNNIRYYIL-P 64
V +ELKN + GT+ VD +N L+ + + K P +++ + +RG+ +RY L P
Sbjct: 149 VIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNCFIRGSVVRYVQLPP 328
Query: 65 DSLNLETL 72
+ +++E L
Sbjct: 329 EGVDIELL 352
>TC225778 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (12%)
Length = 417
Score = 35.0 bits (79), Expect = 0.006
Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Frame = +1
Query: 79 RVKPKKPT-----AGKPLGRGRGRGRG-RGRGRGR 107
R +PKK AG+ GRGRGRG G RGRGRGR
Sbjct: 166 RGRPKKYADEMIAAGRGRGRGRGRGGGGRGRGRGR 270
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/27 (51%), Positives = 15/27 (54%), Gaps = 9/27 (33%)
Frame = +1
Query: 90 PLGRGRGR---------GRGRGRGRGR 107
P RGR + GRGRGRGRGR
Sbjct: 157 PRARGRPKKYADEMIAAGRGRGRGRGR 237
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 92 GRGRGRGRGRG 102
G GRGRGRGRG
Sbjct: 241 GGGRGRGRGRG 273
>TC212981 similar to UP|BCT7_BOVIN (P19661) Bactenecin 7 precursor (BAC7)
(PR-59), partial (9%)
Length = 574
Score = 35.0 bits (79), Expect = 0.006
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 92 GRGRGRGRGRGRGRGR 107
GR RGRGRGRGRGRGR
Sbjct: 75 GRVRGRGRGRGRGRGR 122
Score = 33.9 bits (76), Expect = 0.012
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +3
Query: 90 PLGRGRGRGRGRGRGRGR 107
P RGR RGRGRGRGRGR
Sbjct: 63 PPXRGRVRGRGRGRGRGR 116
Score = 33.9 bits (76), Expect = 0.012
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 85 PTAGKPLGRGRGRGRGRGR 103
P G+ GRGRGRGRGRGR
Sbjct: 66 PXRGRVRGRGRGRGRGRGR 122
>TC224592 similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial (63%)
Length = 1120
Score = 34.3 bits (77), Expect = 0.009
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1
Query: 90 PLGRGRGRGRGRGRGRGR 107
P GRGRGRGRG RGRGR
Sbjct: 748 PQGRGRGRGRGGYRGRGR 801
Score = 33.1 bits (74), Expect = 0.021
Identities = 16/20 (80%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 88 GKPLGRGRGRGRG-RGRGRG 106
G GRGRGRGRG RGRGRG
Sbjct: 634 GNARGRGRGRGRGFRGRGRG 693
Score = 30.4 bits (67), Expect = 0.14
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1
Query: 92 GRGRGRGRGRGRGRG 106
GRGRGRG RGRGRG
Sbjct: 760 GRGRGRGGYRGRGRG 804
Score = 30.0 bits (66), Expect = 0.18
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 93 RGRGRGRGRGRGRG 106
RG RGRGRGRGRG
Sbjct: 631 RGNARGRGRGRGRG 672
Score = 29.6 bits (65), Expect = 0.23
Identities = 14/17 (82%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +1
Query: 92 GRGRGRGRGRGRG-RGR 107
G RGRGRGRGRG RGR
Sbjct: 634 GNARGRGRGRGRGFRGR 684
Score = 29.6 bits (65), Expect = 0.23
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 93 RGRGRGRGRGRGRGR 107
R RG RGRGRGRGR
Sbjct: 625 RNRGNARGRGRGRGR 669
Score = 29.6 bits (65), Expect = 0.23
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 88 GKPLGRGRGRGRGRGRGRG 106
G+ GRG GRGRGRGRG G
Sbjct: 535 GRVRGRG-GRGRGRGRGNG 588
Score = 27.7 bits (60), Expect = 0.89
Identities = 12/17 (70%), Positives = 13/17 (75%)
Frame = +1
Query: 88 GKPLGRGRGRGRGRGRG 104
G+ GRGRG RGRGRG
Sbjct: 754 GRGRGRGRGGYRGRGRG 804
Score = 26.6 bits (57), Expect = 2.0
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 20/36 (55%)
Frame = +1
Query: 92 GRGRGRGRG--------------------RGRGRGR 107
GRGRGRGRG RGRGRGR
Sbjct: 556 GRGRGRGRGNGFISADYEDGGWDRNRGNARGRGRGR 663
>TC217547 weakly similar to UP|Q61869 (Q61869) Keratin 2 epidermis, partial
(8%)
Length = 700
Score = 32.7 bits (73), Expect = 0.028
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 89 KPLGRGRGRGRGRGRG 104
+P G GRGRGRGRGRG
Sbjct: 97 RPYGGGRGRGRGRGRG 144
Score = 32.0 bits (71), Expect = 0.047
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1
Query: 87 AGKPLGRGRGRGRGRGRGRG 106
+G P G GRGRGRGRGRG
Sbjct: 85 SGVPRPYGGGRGRGRGRGRG 144
Score = 28.5 bits (62), Expect = 0.52
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 92 GRGRGRGRGRGRGRGR 107
GRGRGRGRGRG R
Sbjct: 112 GRGRGRGRGRGSYNNR 159
Score = 28.1 bits (61), Expect = 0.68
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +1
Query: 75 EEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
+E P P+ G+ GRGRGRGRG RG
Sbjct: 73 DEHPSGVPRPYGGGR--GRGRGRGRGSYNNRG 162
Score = 27.7 bits (60), Expect = 0.89
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 93 RGRGRGRGRGRGRGR 107
R G GRGRGRGRGR
Sbjct: 97 RPYGGGRGRGRGRGR 141
Score = 25.8 bits (55), Expect = 3.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 90 PLGRGRGRGRGRGRGRGR 107
P G R G GRGRGRGR
Sbjct: 82 PSGVPRPYGGGRGRGRGR 135
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,971,707
Number of Sequences: 63676
Number of extensions: 50448
Number of successful extensions: 1416
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146865.2