
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146854.1 + phase: 0 /pseudo
(1390 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 76 9e-14
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 66 9e-11
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 50 9e-06
TC224656 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 50 9e-06
BQ630253 48 3e-05
TC224723 hydroxyproline-rich glycoprotein 47 4e-05
TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 47 8e-05
AW396581 46 1e-04
TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), parti... 45 2e-04
TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%) 45 3e-04
CA853919 homologue to PIR|T11622|T11 extensin class 1 precursor ... 44 6e-04
BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - ... 43 8e-04
CA853553 homologue to PIR|T11671|T116 extensin-like protein 127 ... 42 0.002
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 41 0.003
BU082637 homologue to GP|3204132|emb| extensin {Cicer arietinum}... 41 0.004
TC224639 homologue to UP|Q43682 (Q43682) Extensin-like protein (... 40 0.009
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 40 0.009
TC209301 39 0.012
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 39 0.012
BQ741699 homologue to GP|3204132|emb extensin {Cicer arietinum},... 39 0.016
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 76.3 bits (186), Expect = 9e-14
Identities = 57/130 (43%), Positives = 66/130 (49%)
Frame = -3
Query: 1080 MASSKLVDNGMKS*LDCSSTINIYKLLLMHPCLLRQLLIALLHFLFMLMI*SLLEILSLK 1139
M SK V +GMKS*L C S Y + P LL I LH +M M L I +
Sbjct: 410 MG*SKQVGSGMKS*LICFSKKVTYNQFQITPYLLSPKEILSLHCWYM*MTSFLQVIQLMN 231
Query: 1140 LISSRMFYTKPSKSKTLVF*NIF*VLKLHTPKMVSLFAKGSIVWICYKIQVYLAQSRLPH 1199
L SRMF SK K V *N F LKL V +G+IVWIC +IQ YL + L H
Sbjct: 230 LTGSRMFLI*LSKLKIWVS*NTFLGLKLLILDWVLPSHRGNIVWICLRIQDYLGANLLAH 51
Query: 1200 LQIHPLSCTM 1209
L HP SCT+
Sbjct: 50 LLTHP*SCTV 21
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 66.2 bits (160), Expect = 9e-11
Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 15/296 (5%)
Frame = -2
Query: 287 IPMQINLMLLQMLLLMKAFLILRKMVKDLPLSLKLVLLKSNMVILLLYFSNHLWFLKHLP 346
+P I+L+ + L F K++ L LVL + ++LLL F L H
Sbjct: 824 LPFYISLLFKEWLYFSVNFF---KLLLQSAKILGLVLSSNFFLLLLLVFVFFFLLLFHFL 654
Query: 347 QILLAPIILLLLFHPFPQVSI-------------LLSLVLYILKIIIGLLIQVLMSIFAP 393
+L+ I F F ++I LL ++L++ I++ LL+ + + + +
Sbjct: 653 PTILSFIFFFTFFFYFFYINIPNRNFNLAILFLTLLFILLFLFVILLFLLLILFLFLISF 474
Query: 394 LCICFIPFIKLNLCMLLYLMVLL*LFTMLALLF-FHLLSTLPMSYIHLISELT*FLFTNF 452
+ + FI F C+ ++ +LL LF +L +F F LL T+ +S+ ++ L F+F
Sbjct: 473 IILTFIIFSLFL*CVCFFIFILLFLFLLLLFIFLFLLLFTITVSFFFVLLFLIPFIFP-I 297
Query: 453 ALFCLTKSIFCLINA*YRI*NPRR*LVWVIFVMVSIG*ILLHAIRSLLFLLPQVFVLQF- 511
F L F IN FV++ + +LL I ++F L + + F
Sbjct: 296 IFFPLD---FLCIN----------------FVILFLLFLLLFIILPIIFFLLDLLCISFA 174
Query: 512 L*TLVILFVLV*LFHVFLPMLFGTLD*DICLIKDCPKCIICILLFLLIIKLLVTYV 567
+ ++LF+L L + LP++F LD L+ ++ + FLL++ +L+ ++
Sbjct: 173 ILVFLLLFLLFLLLFIILPIIFFPLD----LLYISFVTLVFVFFFLLLLLILLLFL 18
Score = 40.4 bits (93), Expect = 0.005
Identities = 61/222 (27%), Positives = 98/222 (43%), Gaps = 1/222 (0%)
Frame = -2
Query: 296 LQMLLLMKAFLILRKMVKDLPLSLKLVLLKSNMVIL-LLYFSNHLWFLKHLPQILLAPII 354
L +L L F++L V L L L L L + +IL + FS L + ILL +
Sbjct: 572 LAILFLTLLFILLFLFVILLFLLLILFLFLISFIILTFIIFSLFL*CVCFFIFILLFLFL 393
Query: 355 LLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIFAPLCICFIPFIKLNLCMLLYLMV 414
LLL F + + ++L +I + ++ LCI F+ +L+L+
Sbjct: 392 LLLFIFLFLLLFTITVSFFFVLLFLIPFIFPIIFFPLDFLCINFV---------ILFLLF 240
Query: 415 LL*LFTMLALLFFHLLSTLPMSYIHLISELT*FLFTNFALFCLTKSIFCLINA*YRI*NP 474
LL LF +L ++FF LL L +S+ L+ L LF LF + IF ++
Sbjct: 239 LL-LFIILPIIFF-LLDLLCISFAILVFLLLFLLF--LLLFIILPIIFFPLD-------- 96
Query: 475 RR*LVWVIFVMVSIG*ILLHAIRSLLFLLPQVFVLQFL*TLV 516
L+++ FV + + FLL + +L FL T+V
Sbjct: 95 ---LLYISFVTL---------VFVFFFLLLLLILLLFLFTIV 6
Score = 38.1 bits (87), Expect = 0.027
Identities = 41/142 (28%), Positives = 63/142 (43%), Gaps = 11/142 (7%)
Frame = -2
Query: 801 LFQEML-FSMN*YYLTIHHHPLLPLKIG-NIFLPLPLIFLILRILIFHNHHLLSHHLHSP 858
LF+E L FS+N + L + +L L + N FL L L+F+ +L+FH + +
Sbjct: 803 LFKEWLYFSVNFFKLLLQSAKILGLVLSSNFFLLLLLVFVFFFLLLFHFLPTILSFIFFF 624
Query: 859 LLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHML--- 915
Y+ + L L I + F + LFLLLI I F IL ++
Sbjct: 623 TFFFYFFYINIPNRNFNLAILFLTLLFILLFLFVILLFLLLILFLFLISFIILTFIIFSL 444
Query: 916 ------VYLTLILFLLCLLLLI 931
++ ++LFL LLL I
Sbjct: 443 FL*CVCFFIFILLFLFLLLLFI 378
Score = 33.1 bits (74), Expect = 0.87
Identities = 46/196 (23%), Positives = 83/196 (41%)
Frame = -2
Query: 737 LLIMFYMIHCLIFILSKFLVAFVMLLHFKLIEQNYNLEPESVFS*VTSLDSKVQFFLTYI 796
LL +F ++ L+ IL FL++F++L S+F * + FL +
Sbjct: 539 LLFLFVILLFLLLILFLFLISFIILTFIIF----------SLFL*CVCFFIFILLFLFLL 390
Query: 797 PEKSLFQEMLFSMN*YYLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLH 856
+LF++ + + L+P IF PL FL + +I LL
Sbjct: 389 LLFIFLFLLLFTITVSFFFVLLF-LIPFIFPIIFFPLD--FLCINFVILFLLFLL----- 234
Query: 857 SPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLV 916
L L + +LL+L I + +++ F + L L +I + P +L+ +
Sbjct: 233 ------LFIILPIIFFLLDLLC-ISFAILVFLLLFLLFLLLFIILPIIFFPLDLLY--IS 81
Query: 917 YLTLILFLLCLLLLIL 932
++TL+ LLLL++
Sbjct: 80 FVTLVFVFFFLLLLLI 33
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 49.7 bits (117), Expect = 9e-06
Identities = 42/130 (32%), Positives = 64/130 (48%), Gaps = 20/130 (15%)
Frame = +3
Query: 813 YLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSH-------HLHSPLLHNLHH 865
+LT H LL L ++ LP PL+ L+L +I +HH L H LH L H LHH
Sbjct: 201 HLTSTPHHLLLLTSTSL-LPHPLLHLLLHTIINLHHHPLPHLHPLIIISLHHHLHHLLHH 377
Query: 866 YLLMSLYL------LELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFP-------ILF 912
++ SL+L L+LP+ I LH H+ +H + + ++P P +L
Sbjct: 378 PIITSLHLHLKSLPLQLPTTISLHHHL---LHLLHHPTITSLLHHHLPHPPHLTITRLLL 548
Query: 913 HMLVYLTLIL 922
H L +L L++
Sbjct: 549 HHLPHLHLLI 578
Score = 40.4 bits (93), Expect = 0.005
Identities = 35/109 (32%), Positives = 42/109 (38%), Gaps = 21/109 (19%)
Frame = +3
Query: 814 LTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSH-------------------- 853
+ +HHHPL L PLI + L H HHLL H
Sbjct: 291 INLHHHPLPHLH--------PLIIISLH---HHLHHLLHHPIITSLHLHLKSLPLQLPTT 437
Query: 854 -HLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLIT 901
LH LLH LHH + SL LP L + + HL LL+IT
Sbjct: 438 ISLHHHLLHLLHHPTITSLLHHHLPHPPHLTITRLLLHHLPHLHLLIIT 584
Score = 40.0 bits (92), Expect = 0.007
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 11/123 (8%)
Frame = +3
Query: 808 SMN*YYLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHN-----------HHLLSHHLH 856
S++ + L + HHP + + + LP P I R+L+ H HH L H LH
Sbjct: 441 SLHHHLLHLLHHPTITSLLHH-HLPHPPHLTITRLLLHHLPHLHLLIITSLHHHLHHPLH 617
Query: 857 SPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLV 916
+ L H+LL+ L+ H +T+ HL L + + I +L H L+
Sbjct: 618 HLTITRLRHHLLLPLH------------HPTITSLRHHLKSLQLQLLTTISLLLLHHQLL 761
Query: 917 YLT 919
+T
Sbjct: 762 TIT 770
>TC224656 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (22%)
Length = 558
Score = 49.7 bits (117), Expect = 9e-06
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Frame = +3
Query: 840 LRILIFHNHHLLSHHLH----SPLLHNLHHYL----LMSLYLLELPSEIKLHLHIYMTTF 891
L I H+HHLL HHLH +PLLH+LHH L + +LL L LH++I +
Sbjct: 42 LIITTSHHHHLLHHHLHHMFTNPLLHHLHHLLRHIFISHHHLLHL--HHLLHMYINLHLH 215
Query: 892 AMHLFLLLITVSVNI---PFPILFHMLV 916
+H L IT+S ++ P +L H+++
Sbjct: 216 LLHRLLHYITISHHLLHHPHLLLHHIIL 299
Score = 45.8 bits (107), Expect = 1e-04
Identities = 44/127 (34%), Positives = 61/127 (47%), Gaps = 10/127 (7%)
Frame = +3
Query: 815 TIHHHPLLPLKIGNIFL-PL--PLIFLILRILIFHNHHLLSHH-------LHSPLLHNLH 864
T HHH LL + ++F PL L L+ I I H+H L HH LH LLH L
Sbjct: 54 TSHHHHLLHHHLHHMFTNPLLHHLHHLLRHIFISHHHLLHLHHLLHMYINLHLHLLHRLL 233
Query: 865 HYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILFL 924
HY+ +S +LL P + LH HI +T+ + + I F F+ L + +L L
Sbjct: 234 HYITISHHLLHHP-HLLLH-HIILTSITHPHLRYIKFAAKAI*FCFFFNKL--CSTLLHL 401
Query: 925 LCLLLLI 931
+C L I
Sbjct: 402 ICNHLCI 422
Score = 35.0 bits (79), Expect = 0.23
Identities = 29/87 (33%), Positives = 42/87 (47%), Gaps = 7/87 (8%)
Frame = +3
Query: 846 HNHHLL---SHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLL---- 898
H+HHL+ SHH H L H+LHH + P LH H+ F H LL
Sbjct: 30 HHHHLIITTSHH-HHLLHHHLHH-------MFTNPLLHHLH-HLLRHIFISHHHLLHLHH 182
Query: 899 LITVSVNIPFPILFHMLVYLTLILFLL 925
L+ + +N+ +L +L Y+T+ LL
Sbjct: 183 LLHMYINLHLHLLHRLLHYITISHHLL 263
>BQ630253
Length = 429
Score = 48.1 bits (113), Expect = 3e-05
Identities = 39/101 (38%), Positives = 47/101 (45%), Gaps = 19/101 (18%)
Frame = +2
Query: 816 IHHHPLL---PLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHS---PL-----LHNLH 864
+HHHP L P LPL+ L+ I H+HHL HHLH+ PL LH+L
Sbjct: 122 LHHHPPLLLPPTTTTPHHHHLPLL-LLPTTTILHHHHLHHHHLHTITNPLHLHLHLHHLL 298
Query: 865 HYLL--------MSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
H LL + L L LPS HLH+ T HL L
Sbjct: 299 HLLLHHTITHHHLLLPQLPLPSTFTNHLHLQFTYMLPHLHL 421
Score = 29.6 bits (65), Expect = 9.7
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Frame = +2
Query: 846 HNHHLLSHHL---------HSPLL-----HNLHHYLLMSLYLLELPSEIKLHLHIYMTTF 891
H+HHL HHL H PLL HH+ L LL LP+ LH H
Sbjct: 74 HHHHLHLHHLPITINLLHHHPPLLLPPTTTTPHHH---HLPLLLLPTTTILHHH---HLH 235
Query: 892 AMHLFLLLITVSVNIPFPILFHMLVYLTL 920
HL + + +++ L H+L++ T+
Sbjct: 236 HHHLHTITNPLHLHLHLHHLLHLLLHHTI 322
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 47.4 bits (111), Expect = 4e-05
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +2
Query: 817 HHHPLLP--LKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLL 874
HHHP L L I N PL+ L + H+HHLL L + + HH L+++
Sbjct: 839 HHHPHLHHLLIIINPLHHHPLLLLPPTTITLHHHHLLLLLLPTTTTLHHHHPHHRRLHII 1018
Query: 875 ELPSEIKLHLHIYMTTFAM---HLFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLI 931
P + LHLH +TT + HL LL++ ++ N P H+L LT L LL L+
Sbjct: 1019TNPLHLHLHLHHLLTTIKVLLHHLPLLILPITTN-PLHHQRHILHLLTTT*ALHHLLHLL 1195
Score = 41.6 bits (96), Expect = 0.002
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Frame = +2
Query: 818 HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLL--HNLHHYLLM------ 869
HHP L I L L ++ + I H+HH HLH L+ + LHH+ L+
Sbjct: 749 HHPHHHLIIIIPHLHLKSMYTLPTITTHHHHH--HPHLHHLLIIINPLHHHPLLLLPPTT 922
Query: 870 ------SLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILF 923
L LL LP+ LH H H L +IT +++ L H+L + ++L
Sbjct: 923 ITLHHHHLLLLLLPTTTTLHHH-----HPHHRRLHIITNPLHLHLH-LHHLLTTIKVLLH 1084
Query: 924 LLCLLLLILNQNPMMRQSNM 943
L LL+L + NP+ Q ++
Sbjct: 1085HLPLLILPITTNPLHHQRHI 1144
Score = 39.3 bits (90), Expect = 0.012
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Frame = +2
Query: 810 N*YYLTIH-HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLS--------HHLHSPLL 860
N +L +H HH L +K+ LPL LI I + H H+L HHL L
Sbjct: 1022 NPLHLHLHLHHLLTTIKVLLHHLPL-LILPITTNPLHHQRHILHLLTTT*ALHHLLHLLP 1198
Query: 861 HNL--HHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
H+ HH+LL+ LL PS HLH+ + HL L
Sbjct: 1199 HHTITHHHLLLPQLLL--PSTFTNHLHLRFISMLPHLHL 1309
Score = 38.9 bits (89), Expect = 0.016
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = -1
Query: 810 N*YYLTIH-HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLS-------HHLHSPLLH 861
N +L +H HH L +K+ LPL LI + H +L HHL LLH
Sbjct: 554 NPLHLHLHLHHLLTTIKVLLHHLPL-LILPTTTNPLHHQRRILHLTTM*ALHHLLHLLLH 378
Query: 862 NL--HHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
+ HH+LL+ L LPS HLH+ T HL L
Sbjct: 377 HTITHHHLLLPQ--LPLPSTFTNHLHLQFTYMLPHLHL 270
Score = 35.4 bits (80), Expect = 0.18
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Frame = +2
Query: 814 LTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNH---------------HLLSHHLHSP 858
+T+HHH LL L+ L + H+H HL HHL +
Sbjct: 923 ITLHHHHLL------------LLLLPTTTTLHHHHPHHRRLHIITNPLHLHLHLHHLLTT 1066
Query: 859 LLHNLHHYLLMSLYLLELPSEIKLH-LHIYMTTFAMHLFLLLI 900
+ LHH L+ L + P + H LH+ TT A+H L L+
Sbjct: 1067 IKVLLHHLPLLILPITTNPLHHQRHILHLLTTT*ALHHLLHLL 1195
Score = 29.6 bits (65), Expect = 9.7
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 851 LSHHLHSPLLHNLHHYLLMSLYLLELPS-----EIKLHLHIYMTTFAMHLFLLLITVSVN 905
L HHLH P HH+L++ + L L S I H H + HL LLI ++
Sbjct: 734 LPHHLHHP-----HHHLIIIIPHLHLKSMYTLPTITTHHHHHHP----HLHHLLIIINPL 886
Query: 906 IPFPILFHMLVYLTLILFLLCLLLL 930
P+L +TL L LLLL
Sbjct: 887 HHHPLLLLPPTTITLHHHHLLLLLL 961
>TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (67%)
Length = 1240
Score = 46.6 bits (109), Expect = 8e-05
Identities = 42/116 (36%), Positives = 58/116 (49%), Gaps = 8/116 (6%)
Frame = +1
Query: 814 LTIHHHPLL-PLKIGNIFLPL--PLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMS 870
L +HHH LL P I N L PL+ L + L H H L+ H L +LHH LL+
Sbjct: 109 LHLHHHLLLLPHTIINHHPHLHHPLLLLTIINLPHHLHQFLNPHTIITLHPHLHHPLLL- 285
Query: 871 LYLLELPSEIKLHLHIYMT-----TFAMHLFLLLITVSVNIPFPILFHMLVYLTLI 921
L ++ LP HLH ++ T +H LLL+ ++ P L H L+ LT+I
Sbjct: 286 LTIINLPH----HLHQFLNPHTIITLHLHHHLLLLPHTIINHHPHLHHPLLLLTII 441
Score = 42.0 bits (97), Expect = 0.002
Identities = 40/126 (31%), Positives = 58/126 (45%), Gaps = 8/126 (6%)
Frame = +1
Query: 816 IHHHPLL---PLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLY 872
+HHHP L P LPL+ L+ I H+HHL HHLH+
Sbjct: 592 LHHHPPLLLPPTTTTPHHHHLPLL-LLPTTTILHHHHLHHHHLHT--------------- 723
Query: 873 LLELPSEIKLHLHIYMTTFAM---HLFLLLITVSVNIPFPILFHM--LVYLTLILFLLCL 927
+ P + LHLH +TT + HL LL++ + N L H +++LT + L L
Sbjct: 724 -ITNPLHLHLHLHHLLTTIKVLLHHLPLLILPTTTN----PLHHQRRILHLTTM*ALHHL 888
Query: 928 LLLILN 933
L L+L+
Sbjct: 889 LHLLLH 906
Score = 40.4 bits (93), Expect = 0.005
Identities = 46/153 (30%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Frame = +1
Query: 818 HHPLLPLKIGNI----------------FLPLPLIFLILRILIFHNHHLLSHHL------ 855
HHPLL L I N+ L L ++ + H+HHL HHL
Sbjct: 412 HHPLLLLTIINLPHHLHHPHHHLIIIIPHLHLKSMYTLPTTTTHHHHHLHLHHLPITINL 591
Query: 856 ---HSPLL-----HNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIP 907
H PLL HH+ L LL LP+ LH H H L IT +++
Sbjct: 592 LHHHPPLLLPPTTTTPHHH---HLPLLLLPTTTILHHH-----HLHHHHLHTITNPLHLH 747
Query: 908 FPILFHMLVYLTLILFLLCLLLLILNQNPMMRQ 940
L H+L + ++L L LL+L NP+ Q
Sbjct: 748 LH-LHHLLTTIKVLLHHLPLLILPTTTNPLHHQ 843
Score = 38.9 bits (89), Expect = 0.016
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = +1
Query: 810 N*YYLTIH-HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLS-------HHLHSPLLH 861
N +L +H HH L +K+ LPL LI + H +L HHL LLH
Sbjct: 730 NPLHLHLHLHHLLTTIKVLLHHLPL-LILPTTTNPLHHQRRILHLTTM*ALHHLLHLLLH 906
Query: 862 NL--HHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
+ HH+LL+ L LPS HLH+ T HL L
Sbjct: 907 HTITHHHLLLPQ--LPLPSTFTNHLHLQFTYMLPHLHL 1014
>AW396581
Length = 401
Score = 46.2 bits (108), Expect = 1e-04
Identities = 37/114 (32%), Positives = 54/114 (46%), Gaps = 13/114 (11%)
Frame = +3
Query: 339 LWFLKHLPQILLAPIILLLLFHPFPQVSI-LLSLVLYILKIIIGLLIQVLMSIFAPLCIC 397
++ L L +LL P I ++F P + I + L L L + LL VL IF PL +
Sbjct: 27 IFVLLFLFLLLLLPFIFPIIFFPLDLLYINFVILFLLFLFFLFLLLFIVLPIIFFPLDLL 206
Query: 398 FIPFIKLNLCML------------LYLMVLL*LFTMLALLFFHLLSTLPMSYIH 439
I F+ L+ L LY+ ++ +F L LLFF L S LP+ + H
Sbjct: 207 SISFVILDFLFLFLLLFVFFPLDLLYISFVILVFLFLFLLFFLLFSILPIMFFH 368
>TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), partial (46%)
Length = 708
Score = 45.1 bits (105), Expect = 2e-04
Identities = 39/123 (31%), Positives = 57/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 815 TIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHH--------------LHSPLL 860
T HH P L + L L I+ L H+H LSHH LH +
Sbjct: 127 TSHHLPHHLLMFTSHHLHL*SHLHIIINLHLHHHQNLSHHTITNHHLRLHQNLNLHITIN 306
Query: 861 HNLHHYLLMSLY-LLELPSEIKLHLHIY-MTTFAMHLFLLLITVSVNIPFPILFHMLVYL 918
H+LHH+ SL ++ LP + L+ + +TT +H LLL+ ++ P L H L+ L
Sbjct: 307 HHLHHHQCPSLLTIINLPHHLHQFLNPHTITTLHLHHHLLLLPHTIINHHPHLHHPLLLL 486
Query: 919 TLI 921
T+I
Sbjct: 487 TII 495
Score = 29.6 bits (65), Expect = 9.7
Identities = 28/74 (37%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = +1
Query: 814 LTIHHHPLL-PLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLY 872
L +HHH LL P I N L L+L I+ L HHLH P HH+L++ +
Sbjct: 403 LHLHHHLLLLPHTIINHHPHLHHPLLLLTII------NLPHHLHHP-----HHHLIIIIP 549
Query: 873 LLEL-PSEIKLHLH 885
L L S++KL H
Sbjct: 550 HLHLSTSKLKL*KH 591
>TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%)
Length = 1083
Score = 44.7 bits (104), Expect = 3e-04
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Frame = +1
Query: 815 TIHHHPLLPLKIGNIFLPLPLIFLILRI-LIFHNHHLLSHHLHSPLLHNLHHYLLMSLYL 873
T+HHH L + PL+ ++L + I HHLLS LH P L H L+S++L
Sbjct: 223 TLHHHQSTHLLLHTTITLHPLLSILLLLHTIITLHHLLSTLLHLPTTTTLLH--LLSIHL 396
Query: 874 LELPSEIKLH------LHIYMTTFAMHLF--LLLITVSVNIPFPILFHMLVYLTLILFLL 925
L L + LH L ++ TT HL LL + + + + H+L++ T L L
Sbjct: 397 L-LHTTTTLHHLLSTLLLLHTTTTLHHLLSTLLHLPTTTTLFHLLSIHLLLHTTTTLHHL 573
Query: 926 CLLLLILN 933
LL+L+
Sbjct: 574 LSTLLLLH 597
Score = 33.1 bits (74), Expect = 0.87
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +1
Query: 839 ILRILIFHNHHLLSHHLHSPLLHNLHHY-----LLMSLYLLELPSEIKLHLHIYMTTFAM 893
+L I +HH +HHL ++ LHH+ LL + L I L LH +T +
Sbjct: 157 LLHTTITLHHHQSTHHL-LLIITTLHHHQSTHLLLHTTITLHPLLSILLLLHTIITLHHL 333
Query: 894 HLFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLILN 933
LL + + + + H+L++ T L L LL+L+
Sbjct: 334 LSTLLHLPTTTTLLHLLSIHLLLHTTTTLHHLLSTLLLLH 453
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 846 HNHHLLSHHLHSPLL---HNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMH-LFLLLIT 901
H+H + H LH+ + H H+LL+ + L L LH TT +H L +L+
Sbjct: 133 HHHQSIHHLLHTTITLHHHQSTHHLLLIITTLHHHQSTHLLLH---TTITLHPLLSILLL 303
Query: 902 VSVNIPFPILFHMLVYL---TLILFLLCLLLLI 931
+ I L L++L T +L LL + LL+
Sbjct: 304 LHTIITLHHLLSTLLHLPTTTTLLHLLSIHLLL 402
>CA853919 homologue to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (30%)
Length = 454
Score = 43.5 bits (101), Expect = 6e-04
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Frame = +1
Query: 818 HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLL--------SHHLHSPLL--------- 860
HHPLL L I N+ LP+ +L H+H L HH H PLL
Sbjct: 157 HHPLLLLTIINLPHHLPITINLL-----HHHPPLLLPPTTTTPHHHHLPLLLLPTTTILH 321
Query: 861 -HNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVNI 906
H+LHH+ L+ + P + LHLH +TT + L LL S I
Sbjct: 322 HHHLHHH---HLHTITNPLHLHLHLHHLLTTIKVLLHHLLSKSSSTI 453
>BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (24%)
Length = 354
Score = 43.1 bits (100), Expect = 8e-04
Identities = 41/122 (33%), Positives = 66/122 (53%), Gaps = 8/122 (6%)
Frame = +2
Query: 820 PLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHN-LHHYLLMSLYLLELPS 878
PL L I + L L + + I+ H+HHL HHL P+ N LHH+ L +L + +
Sbjct: 2 PLHLLIIIILHLHLKRMHNLPTIITHHHHHLHLHHL--PITINLLHHHHLHHHHLNTITN 175
Query: 879 EIKLHLHIY--MTTFAM---HLFLLLITVSVNIPFPILFH--MLVYLTLILFLLCLLLLI 931
+ LHLH++ +TT + HL LL++ + N L H ++++LT + L LL L+
Sbjct: 176 PLFLHLHLHHLITTIKVLLHHLPLLILPTTTN----HLHHQRLILHLTTMRVLHHLLHLL 343
Query: 932 LN 933
L+
Sbjct: 344 LH 349
>CA853553 homologue to PIR|T11671|T116 extensin-like protein 127 - cowpea
(fragment), partial (32%)
Length = 283
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/101 (32%), Positives = 46/101 (44%)
Frame = +1
Query: 818 HHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELP 877
HH L + + P+ L L L H HHL HHLH+ +LHH+ L+L L
Sbjct: 19 HHLLHHMXVQVSTTPITLHHLHLXFTSHHLHHLXLHHLHT--FTSLHHH---HLHLRHLH 183
Query: 878 SEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLVYL 918
I HLH L LLL +S++ L H+L ++
Sbjct: 184 XFISHHLH--------RLLLLLHXMSISPLHLHLHHLLXHM 282
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 41.2 bits (95), Expect = 0.003
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Frame = -2
Query: 789 VQFFLTYIPE--KSLFQEML-FSMN*YYLTIHHHPLLPLKIGNIFLPLPLIFLILRILIF 845
+ F Y+P LF+E L FS+N + L + +L L + + FL L L+F+ +L+F
Sbjct: 438 LSFSFFYLPFYISLLFKEWLYFSVNFFKLLLQRTKILGLVLSSNFLLLLLVFVFFFLLLF 259
Query: 846 HNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLLLITVSVN 905
H+L + L+ + + + +I + +L L +T+ +
Sbjct: 258 -------------------HFLPIILFFIFFFTFLCGFFYINIPYRNFNLAFLFLTLFFS 136
Query: 906 IPFPILFHMLVYLTLILFLLCLLLLIL 932
I F +L++L LILFL+ L+ I+
Sbjct: 135 ILLLFFFVILLFLLLILFLIFLIFFII 55
>BU082637 homologue to GP|3204132|emb| extensin {Cicer arietinum}, partial
(46%)
Length = 398
Score = 40.8 bits (94), Expect = 0.004
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +1
Query: 814 LTIHHHPLL-PLKIGNIFLPL--PLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMS 870
L +HHH LL P I N L PL+ L + L H HLL HH + HH+LL
Sbjct: 28 LHLHHHLLLLPHTIINHHPHLHHPLLLLTIINLPHHLLHLLPHHTIT------HHHLLFP 189
Query: 871 LYLLELPSEIKLHLHIYMTTFAMHLFL 897
L LPS HLH+ + + HL L
Sbjct: 190 QLL--LPSTFTNHLHLRLISMLPHLHL 264
>TC224639 homologue to UP|Q43682 (Q43682) Extensin-like protein (Fragment),
partial (48%)
Length = 702
Score = 39.7 bits (91), Expect = 0.009
Identities = 38/128 (29%), Positives = 59/128 (45%), Gaps = 6/128 (4%)
Frame = +2
Query: 817 HHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNL--HHYLLMSLYLL 874
HHHP + + + LPL + + H+ HL +PLL +L HH + +L
Sbjct: 14 HHHPPMSISLHLHRLPLLPHHMFTNLHPHHHLHLPHLISTNPLLRHLPRHHLHMFISHLP 193
Query: 875 ELPSEIKLHLHIYMTTFA-MHLFLLLITVSVNIPFPILFHMLVYLT---LILFLLCLLLL 930
LP LH H T+ +HL L L +N+ +L +L ++T L+L L LL
Sbjct: 194 HLP----LHHHPMSTSHRHLHLLLHLPHTFINLHLHLLHRLLHHITISHLLLHHLHRLLH 361
Query: 931 ILNQNPMM 938
I P++
Sbjct: 362 ITTSLPLL 385
Score = 34.3 bits (77), Expect = 0.39
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +2
Query: 817 HHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHN----LHHYLLMSLY 872
HHH LP ++ PL+ + R H H +SH H PL H+ H +L +
Sbjct: 98 HHHLHLP----HLISTNPLLRHLPR---HHLHMFISHLPHLPLHHHPMSTSHRHLHL--- 247
Query: 873 LLELP-SEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLI 931
LL LP + I LHLH+ +H L IT+S + + H L+++T L LL + L+
Sbjct: 248 LLHLPHTFINLHLHL------LHRLLHHITISHLLLHHL--HRLLHITTSLPLLHHIRLL 403
Query: 932 LNQNP 936
P
Sbjct: 404 HRITP 418
Score = 31.6 bits (70), Expect = 2.5
Identities = 31/102 (30%), Positives = 46/102 (44%), Gaps = 3/102 (2%)
Frame = +2
Query: 813 YLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLY 872
++ I H P LPL P+ L +L+ H ++ HLH LLH L H++ +S
Sbjct: 170 HMFISHLPHLPLH----HHPMSTSHRHLHLLLHLPHTFINLHLH--LLHRLLHHITISHL 331
Query: 873 LLELPSEIKLHLHIYMTT---FAMHLFLLLITVSVNIPFPIL 911
LL LH +++TT H+ LL +I P L
Sbjct: 332 LLH-----HLHRLLHITTSLPLLHHIRLLHRITPTSITHPHL 442
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 39.7 bits (91), Expect = 0.009
Identities = 34/92 (36%), Positives = 43/92 (45%), Gaps = 9/92 (9%)
Frame = +3
Query: 815 TIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNH--HLLS-----HHLHSPLLHNL--HH 865
TI HH L +K+ LPL ++ L H HLL+ HHL L H+ HH
Sbjct: 291 TILHHLLTTIKVLLHHLPLLILPTTTNPLHHQRHILHLLTTT*ALHHLLHLLPHHTITHH 470
Query: 866 YLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
+LL+ L LPS HLH+ T HL L
Sbjct: 471 HLLLPQ--LPLPSTFTNHLHLRFTYMLPHLHL 560
Score = 39.3 bits (90), Expect = 0.012
Identities = 33/105 (31%), Positives = 48/105 (45%)
Frame = +3
Query: 839 ILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLL 898
+L I H+HH H H P+ NL H+ LL P+ H H HL LL
Sbjct: 129 LLHTTILHHHHHHLHLHHLPITINLLHH---HPPLLLPPTTTTPHHH--------HLPLL 275
Query: 899 LITVSVNIPFPILFHMLVYLTLILFLLCLLLLILNQNPMMRQSNM 943
L+ + IL H+L + ++L L LL+L NP+ Q ++
Sbjct: 276 LLPTTT-----ILHHLLTTIKVLLHHLPLLILPTTTNPLHHQRHI 395
Score = 32.7 bits (73), Expect = 1.1
Identities = 35/104 (33%), Positives = 43/104 (40%), Gaps = 14/104 (13%)
Frame = +3
Query: 842 ILIFHNHHLLSHHL---------HSPLL-----HNLHHYLLMSLYLLELPSEIKLHLHIY 887
IL H+HHL HHL H PLL HH+ L LL LP+ LH +
Sbjct: 144 ILHHHHHHLHLHHLPITINLLHHHPPLLLPPTTTTPHHH---HLPLLLLPTTTILHHLLT 314
Query: 888 MTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLI 931
+H LLI + P H+L LT L LL L+
Sbjct: 315 TIKVLLHHLPLLILPTTTNPLHHQRHILHLLTTT*ALHHLLHLL 446
>TC209301
Length = 446
Score = 39.3 bits (90), Expect = 0.012
Identities = 30/101 (29%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 816 IHHHPLLPLKI-GNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLL 874
+HH L ++ G++FL L L L+L++ ++ H L H L PLL LHH + +L
Sbjct: 40 VHHFQLQDQRLLGHLFLHL-LHLLVLKLPLYFPHLLWHHCLTQPLLF*LHHLQPREVAVL 216
Query: 875 ELPSEIKLHLHIYMTTFAMHLFLLLITVSVNIPFPILFHML 915
P + HL ++ LL + +P FH+L
Sbjct: 217 I*PHHLPCHLTVFYLQLC*LR*DLLFLNTTRLPSLPQFHIL 339
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 39.3 bits (90), Expect = 0.012
Identities = 32/97 (32%), Positives = 44/97 (44%), Gaps = 19/97 (19%)
Frame = +3
Query: 817 HHHPLLPLKIGNIFLPLPLIFLILRI---LIFHNHHLL----SHHLHSPLLHNLHHYLLM 869
HHH L P I LP + ++L L+ H HH L + HLH L H HH+
Sbjct: 108 HHHHLHPTTINLHLLPTKIHTILLTTTSHLLHHPHHHLLPTTTSHLHLHLHH--HHHPTT 281
Query: 870 SLYLL------ELPSEIKLHL------HIYMTTFAMH 894
+ +LL LP+ LHL H++ TT +H
Sbjct: 282 TSHLLHHPHHHHLPTTTSLHLHHPHHHHLHTTTSHLH 392
Score = 37.4 bits (85), Expect = 0.046
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 833 LPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFA 892
LP + + R L+ H+HHLL ++ P H+ HH ++ L LP++I H + T
Sbjct: 21 LPHLLITTRALLHHHHHLLHITINLPRHHHHHHLHPTTINLHLLPTKI----HTILLTTT 188
Query: 893 MHL 895
HL
Sbjct: 189 SHL 197
Score = 34.7 bits (78), Expect = 0.30
Identities = 32/109 (29%), Positives = 45/109 (40%), Gaps = 17/109 (15%)
Frame = +3
Query: 839 ILRILIFHNHHLLSHH--------LHSPLLHNLH------HYLLMSLYLLELPSEIKLHL 884
+L H HHL HH LH P H+LH H+ L +LL + S HL
Sbjct: 558 LLTTTSLHLHHLHHHHPPTTTSHLLHHPHHHHLHTTTSHPHHHLHHPHLLTITSHPHHHL 737
Query: 885 HIY---MTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLL 930
H + +TT +H P +L H+L ++L L L+L
Sbjct: 738 HHHHHPITTNHLH------------PHHLLHHLLTTTRVLLHHLPFLIL 848
Score = 34.3 bits (77), Expect = 0.39
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 813 YLTIHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLH---SPLLHNLHHYLLM 869
+L HHHP + L P + H HH HHLH S L H+ HH+ L
Sbjct: 252 HLHHHHHPTTTSHL----LHHPHHHHLPTTTSLHLHHPHHHHLHTTTSHLHHHPHHHHLP 419
Query: 870 SLYLLELPSEIKLHLHIYMTT 890
+ L L LH H+++TT
Sbjct: 420 TTTSLHLH---HLHHHLHLTT 473
>BQ741699 homologue to GP|3204132|emb extensin {Cicer arietinum}, partial
(69%)
Length = 431
Score = 38.9 bits (89), Expect = 0.016
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = +1
Query: 814 LTIHHHPLL-PLKIGNIFLPL--PLIFLILRILIFHNHHLLS-------HHLHSPLLHNL 863
L +HHH LL P I N L PL+ + H +L HHL LLH+
Sbjct: 121 LHLHHHLLLLPHTIINHHPHLHHPLLLFTTTNPLHHQRRILHLTTM*ALHHLLHLLLHHT 300
Query: 864 --HHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
HH+LL+ L LPS HLH+ T HL L
Sbjct: 301 ITHHHLLLPQ--LPLPSTFTNHLHLQFTYMLPHLHL 402
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.357 0.162 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,818,558
Number of Sequences: 63676
Number of extensions: 1253893
Number of successful extensions: 26811
Number of sequences better than 10.0: 224
Number of HSP's better than 10.0 without gapping: 14613
Number of HSP's successfully gapped in prelim test: 1520
Number of HSP's that attempted gapping in prelim test: 8612
Number of HSP's gapped (non-prelim): 19794
length of query: 1390
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1281
effective length of database: 5,698,948
effective search space: 7300352388
effective search space used: 7300352388
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146854.1